Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:50:25 (1456557): wrapper (7.7.26015): starting
19:50:25 (1456557): wrapper: running run_atlas (--nthreads 12)
[2025-06-05 19:50:25] Arguments: --nthreads 12
[2025-06-05 19:50:25] Threads: 12
[2025-06-05 19:50:25] Checking for CVMFS
[2025-06-05 19:50:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 19:50:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 19:50:25] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 19:50:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 19:50:25] 2.12.6.0 6469 2943 174284 146836 1 266 25843624 32935937 11048 16776704 0 11223799 99.719 13288596 34688 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-05 19:50:25] CVMFS is ok
[2025-06-05 19:50:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 19:50:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 19:50:25] Further information can be found at the LHC@home message board.
[2025-06-05 19:50:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 19:50:25] Checking for apptainer binary...
[2025-06-05 19:50:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 19:50:25] Running /usr/bin/apptainer --version
[2025-06-05 19:50:25] apptainer version 1.4.1-1.el9
[2025-06-05 19:50:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 19:50:25] c6-1-26-3.aglt2.org
[2025-06-05 19:50:25] apptainer works
[2025-06-05 19:50:25] Set ATHENA_PROC_NUMBER=12
[2025-06-05 19:50:25] Set ATHENA_CORE_NUMBER=12
[2025-06-05 19:50:25] Starting ATLAS job with PandaID=6681380255
[2025-06-05 19:50:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 21:19:38]  *** The last 200 lines of the pilot log: ***
[2025-06-05 21:19:38]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-05 21:19:38]  is_altstaged=None
[2025-06-05 21:19:38]  is_tar=False
[2025-06-05 21:19:38]  lfn=log.44871837._102326.job.log.tgz.1
[2025-06-05 21:19:38]  mtime=0
[2025-06-05 21:19:38]  protocol_id=None
[2025-06-05 21:19:38]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-05 21:19:38]  replicas=None
[2025-06-05 21:19:38]  scope=mc23_13p6TeV
[2025-06-05 21:19:38]  status=None
[2025-06-05 21:19:38]  status_code=0
[2025-06-05 21:19:38]  storage_token=
[2025-06-05 21:19:38]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6681380255/log.44871837._102326.job.log.tgz.1
[2025-06-05 21:19:38]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ef/c7/log.44871837._102326.job.log.tgz.1
[2025-06-05 21:19:38]  workdir=None
[2025-06-05 21:19:38] ]
[2025-06-05 21:19:38] 2025-06-06 01:18:59,064 | INFO     | transferring file log.44871837._102326.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6681380255/log.44871837._102326.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-05 21:19:38] 2025-06-06 01:18:59,065 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6681380255/log.44871837._102326.job.log.tgz.1 /tmp/boinchome/slots/0/log.44871837._102326.job
[2025-06-05 21:19:38] 2025-06-06 01:18:59,077 | INFO     | adding to output.list: log.44871837._102326.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ef/c7/log.44871837._102326.job.log.tg
[2025-06-05 21:19:38] 2025-06-06 01:18:59,078 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-05 21:19:38] 2025-06-06 01:18:59,078 | INFO     | summary of transferred files:
[2025-06-05 21:19:38] 2025-06-06 01:18:59,078 | INFO     |  -- lfn=log.44871837._102326.job.log.tgz.1, status_code=0, status=transferred
[2025-06-05 21:19:38] 2025-06-06 01:18:59,079 | INFO     | stage-out finished correctly
[2025-06-05 21:19:38] 2025-06-06 01:19:01,398 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-05 21:19:38] 2025-06-06 01:19:01,484 | INFO     | job 6681380255 has state=finished
[2025-06-05 21:19:38] 2025-06-06 01:19:01,484 | INFO     | preparing for final server update for job 6681380255 in state='finished'
[2025-06-05 21:19:38] 2025-06-06 01:19:01,485 | INFO     | this job has now completed (state=finished)
[2025-06-05 21:19:38] 2025-06-06 01:19:01,485 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-05 21:19:38] 2025-06-06 01:19:01,485 | INFO     | log transfer has been attempted: DONE
[2025-06-05 21:19:38] 2025-06-06 01:19:01,485 | INFO     | job 6681380255 has finished - writing final server update
[2025-06-05 21:19:38] 2025-06-06 01:19:01,485 | INFO     | total number of processed events: 400 (read)
[2025-06-05 21:19:38] 2025-06-06 01:19:01,486 | INFO     | executing command: lscpu
[2025-06-05 21:19:38] 2025-06-06 01:19:01,506 | INFO     | monitor loop #392: job 0:6681380255 is in state 'finished'
[2025-06-05 21:19:38] 2025-06-06 01:19:01,506 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 21:19:38] 2025-06-06 01:19:01,536 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 21:19:38] 2025-06-06 01:19:04,010 | INFO     | monitor loop #393: job 0:6681380255 is in state 'finished'
[2025-06-05 21:19:38] 2025-06-06 01:19:04,010 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 21:19:38] 2025-06-06 01:19:04,943 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-05 21:19:38] 2025-06-06 01:19:04,959 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2730.3383214285723
[2025-06-05 21:19:38] 2025-06-06 01:19:04,969 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6681380255/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 21:19:38] 2025-06-06 01:19:04,970 | INFO     | extracted standard info from prmon json
[2025-06-05 21:19:38] 2025-06-06 01:19:04,970 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 21:19:38] 2025-06-06 01:19:04,970 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 21:19:38] 2025-06-06 01:19:04,970 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 21:19:38] 2025-06-06 01:19:04,970 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 21:19:38] 2025-06-06 01:19:04,972 | INFO     | fitting pss+swap vs Time
[2025-06-05 21:19:38] 2025-06-06 01:19:04,973 | INFO     | sum of square deviations: 158744693.94999978
[2025-06-05 21:19:38] 2025-06-06 01:19:04,973 | INFO     | sum of deviations: -13332971461.974997
[2025-06-05 21:19:38] 2025-06-06 01:19:04,973 | INFO     | mean x: 1749170176.525
[2025-06-05 21:19:38] 2025-06-06 01:19:04,973 | INFO     | mean y: 2476487.7375
[2025-06-05 21:19:38] 2025-06-06 01:19:04,973 | INFO     | -- intersect: 146915330488.9633
[2025-06-05 21:19:38] 2025-06-06 01:19:04,973 | INFO     | intersect: 146915330488.9633
[2025-06-05 21:19:38] 2025-06-06 01:19:04,973 | INFO     | chi2: 0.19309372135774797
[2025-06-05 21:19:38] 2025-06-06 01:19:04,974 | INFO     | -- intersect: 146915330488.9633
[2025-06-05 21:19:38] 2025-06-06 01:19:04,974 | INFO     | current memory leak: -83.99 B/s (using 80 data points, chi2=0.19)
[2025-06-05 21:19:38] 2025-06-06 01:19:04,974 | INFO     | could have reported an average CPU frequency of 2849 MHz (6 samples)
[2025-06-05 21:19:38] 2025-06-06 01:19:04,974 | INFO     | ..............................
[2025-06-05 21:19:38] 2025-06-06 01:19:04,974 | INFO     | . Timing measurements:
[2025-06-05 21:19:38] 2025-06-06 01:19:04,974 | INFO     | . get job = 0 s
[2025-06-05 21:19:38] 2025-06-06 01:19:04,974 | INFO     | . initial setup = 2 s
[2025-06-05 21:19:38] 2025-06-06 01:19:04,975 | INFO     | . payload setup = 6 s
[2025-06-05 21:19:38] 2025-06-06 01:19:04,975 | INFO     | . stage-in = 0 s
[2025-06-05 21:19:38] 2025-06-06 01:19:04,975 | INFO     | . payload execution = 5276 s
[2025-06-05 21:19:38] 2025-06-06 01:19:04,975 | INFO     | . stage-out = 0 s
[2025-06-05 21:19:38] 2025-06-06 01:19:04,975 | INFO     | . log creation = 0 s
[2025-06-05 21:19:38] 2025-06-06 01:19:04,975 | INFO     | ..............................
[2025-06-05 21:19:38] 2025-06-06 01:19:05,061 | INFO     | 
[2025-06-05 21:19:38] 2025-06-06 01:19:05,062 | INFO     | job summary report
[2025-06-05 21:19:38] 2025-06-06 01:19:05,063 | INFO     | --------------------------------------------------
[2025-06-05 21:19:38] 2025-06-06 01:19:05,063 | INFO     | PanDA job id: 6681380255
[2025-06-05 21:19:38] 2025-06-06 01:19:05,063 | INFO     | task id: 44871837
[2025-06-05 21:19:38] 2025-06-06 01:19:05,063 | INFO     | errors: (none)
[2025-06-05 21:19:38] 2025-06-06 01:19:05,063 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 21:19:38] 2025-06-06 01:19:05,064 | INFO     | pilot state: finished 
[2025-06-05 21:19:38] 2025-06-06 01:19:05,064 | INFO     | transexitcode: 0
[2025-06-05 21:19:38] 2025-06-06 01:19:05,064 | INFO     | exeerrorcode: 0
[2025-06-05 21:19:38] 2025-06-06 01:19:05,064 | INFO     | exeerrordiag: 
[2025-06-05 21:19:38] 2025-06-06 01:19:05,064 | INFO     | exitcode: 0
[2025-06-05 21:19:38] 2025-06-06 01:19:05,064 | INFO     | exitmsg: OK
[2025-06-05 21:19:38] 2025-06-06 01:19:05,064 | INFO     | cpuconsumptiontime: 50032 s
[2025-06-05 21:19:38] 2025-06-06 01:19:05,065 | INFO     | nevents: 400
[2025-06-05 21:19:38] 2025-06-06 01:19:05,065 | INFO     | neventsw: 0
[2025-06-05 21:19:38] 2025-06-06 01:19:05,065 | INFO     | pid: 1468527
[2025-06-05 21:19:38] 2025-06-06 01:19:05,065 | INFO     | pgrp: 1468527
[2025-06-05 21:19:38] 2025-06-06 01:19:05,065 | INFO     | corecount: 12
[2025-06-05 21:19:38] 2025-06-06 01:19:05,065 | INFO     | event service: False
[2025-06-05 21:19:38] 2025-06-06 01:19:05,065 | INFO     | sizes: {0: 2397505, 1: 2397760, 5: 2398022, 12: 2398078, 5287: 2424527, 5288: 2433651, 5291: 2433651, 5294: 2433845}
[2025-06-05 21:19:38] 2025-06-06 01:19:05,065 | INFO     | --------------------------------------------------
[2025-06-05 21:19:38] 2025-06-06 01:19:05,066 | INFO     | 
[2025-06-05 21:19:38] 2025-06-06 01:19:05,066 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 21:19:38] 2025-06-06 01:19:05,085 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 21:19:38] 2025-06-06 01:19:05,085 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 21:19:38] 2025-06-06 01:19:05,085 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 21:19:38] 2025-06-06 01:19:05,085 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 21:19:38] 2025-06-06 01:19:05,085 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 21:19:38] 2025-06-06 01:19:05,086 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 21:19:38] 2025-06-06 01:19:05,086 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 21:19:38] 2025-06-06 01:19:05,086 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 21:19:38] 2025-06-06 01:19:05,086 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 21:19:38] 2025-06-06 01:19:05,086 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 21:19:38] 2025-06-06 01:19:05,086 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 21:19:38] 2025-06-06 01:19:05,086 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 21:19:38] 2025-06-06 01:19:05,086 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 21:19:38] 2025-06-06 01:19:05,086 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 21:19:38] 2025-06-06 01:19:05,086 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 21:19:38] 2025-06-06 01:19:05,086 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 21:19:38] 2025-06-06 01:19:05,086 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 21:19:38] 2025-06-06 01:19:05,087 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 21:19:38] 2025-06-06 01:19:05,087 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 21:19:38] 2025-06-06 01:19:05,087 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 21:19:38] 2025-06-06 01:19:05,087 | INFO     | job 6681380255 has completed (purged errors)
[2025-06-05 21:19:38] 2025-06-06 01:19:05,087 | INFO     | overall cleanup function is called
[2025-06-05 21:19:38] 2025-06-06 01:19:06,095 | INFO     | --- collectZombieJob: --- 10, [1468527]
[2025-06-05 21:19:38] 2025-06-06 01:19:06,095 | INFO     | zombie collector waiting for pid 1468527
[2025-06-05 21:19:38] 2025-06-06 01:19:06,095 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 21:19:38] 2025-06-06 01:19:06,095 | INFO     | collected zombie processes
[2025-06-05 21:19:38] 2025-06-06 01:19:06,095 | INFO     | will attempt to kill all subprocesses of pid=1468527
[2025-06-05 21:19:38] 2025-06-06 01:19:06,332 | INFO     | process IDs to be killed: [1468527] (in reverse order)
[2025-06-05 21:19:38] 2025-06-06 01:19:06,430 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 21:19:38] 2025-06-06 01:19:06,430 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 21:19:38] 2025-06-06 01:19:06,440 | INFO     | did not find any defunct processes belonging to 1468527
[2025-06-05 21:19:38] 2025-06-06 01:19:06,450 | INFO     | did not find any defunct processes belonging to 1468527
[2025-06-05 21:19:38] 2025-06-06 01:19:06,450 | INFO     | ready for new job
[2025-06-05 21:19:38] 2025-06-06 01:19:06,450 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 21:19:38] 2025-06-06 01:19:06,452 | INFO     | ***************************************
[2025-06-05 21:19:38] 2025-06-06 01:19:06,452 | INFO     | ***  PanDA Pilot version 3.10.3.82  ***
[2025-06-05 21:19:38] 2025-06-06 01:19:06,452 | INFO     | ***************************************
[2025-06-05 21:19:38] 2025-06-06 01:19:06,453 | INFO     | 
[2025-06-05 21:19:38] 2025-06-06 01:19:06,467 | INFO     | architecture information:
[2025-06-05 21:19:38] 2025-06-06 01:19:06,468 | INFO     | executing command: cat /etc/os-release
[2025-06-05 21:19:38] 2025-06-06 01:19:06,480 | INFO     | cat /etc/os-release:
[2025-06-05 21:19:38] NAME="CentOS Linux"
[2025-06-05 21:19:38] VERSION="7 (Core)"
[2025-06-05 21:19:38] ID="centos"
[2025-06-05 21:19:38] ID_LIKE="rhel fedora"
[2025-06-05 21:19:38] VERSION_ID="7"
[2025-06-05 21:19:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 21:19:38] ANSI_COLOR="0;31"
[2025-06-05 21:19:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 21:19:38] HOME_URL="https://www.centos.org/"
[2025-06-05 21:19:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 21:19:38] 
[2025-06-05 21:19:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 21:19:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 21:19:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 21:19:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 21:19:38] 
[2025-06-05 21:19:38] 2025-06-06 01:19:06,480 | INFO     | ***************************************
[2025-06-05 21:19:38] 2025-06-06 01:19:06,983 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 21:19:38] 2025-06-06 01:19:06,998 | INFO     | sufficient remaining disk space (76481036288 B)
[2025-06-05 21:19:38] 2025-06-06 01:19:06,998 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 21:19:38] 2025-06-06 01:19:06,998 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 21:19:38] 2025-06-06 01:19:06,999 | INFO     | update_server=False
[2025-06-05 21:19:38] 2025-06-06 01:19:06,999 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 21:19:38] 2025-06-06 01:19:06,999 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 21:19:38] 2025-06-06 01:19:07,164 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 21:19:38] 2025-06-06 01:19:07,335 | INFO     | all payload control threads have been joined
[2025-06-05 21:19:38] 2025-06-06 01:19:07,495 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 21:19:38] 2025-06-06 01:19:07,521 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 21:19:38] 2025-06-06 01:19:07,521 | INFO     | aborting loop
[2025-06-05 21:19:38] 2025-06-06 01:19:07,824 | INFO     | all data control threads have been joined
[2025-06-05 21:19:38] 2025-06-06 01:19:08,004 | INFO     | [job] retrieve thread has finished
[2025-06-05 21:19:38] 2025-06-06 01:19:08,004 | INFO     | [job] queue monitor thread has finished
[2025-06-05 21:19:38] 2025-06-06 01:19:08,098 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 21:19:38] 2025-06-06 01:19:08,155 | INFO     | all job control threads have been joined
[2025-06-05 21:19:38] 2025-06-06 01:19:08,340 | INFO     | [payload] control thread has finished
[2025-06-05 21:19:38] 2025-06-06 01:19:08,526 | INFO     | [job] job monitor thread has finished
[2025-06-05 21:19:38] 2025-06-06 01:19:08,585 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 21:19:38] 2025-06-06 01:19:08,610 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 21:19:38] 2025-06-06 01:19:08,677 | INFO     | [payload] failed_post thread has finished
[2025-06-05 21:19:38] 2025-06-06 01:19:08,829 | INFO     | [data] control thread has finished
[2025-06-05 21:19:38] 2025-06-06 01:19:09,144 | INFO     | [payload] validate_post thread has finished
[2025-06-05 21:19:38] 2025-06-06 01:19:09,161 | INFO     | [job] control thread has finished
[2025-06-05 21:19:38] 2025-06-06 01:19:09,169 | INFO     | [data] copytool_out thread has finished
[2025-06-05 21:19:38] 2025-06-06 01:19:09,263 | INFO     | [job] validate thread has finished
[2025-06-05 21:19:38] 2025-06-06 01:19:09,393 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 21:19:38] 2025-06-06 01:19:09,495 | INFO     | [data] copytool_in thread has finished
[2025-06-05 21:19:38] 2025-06-06 01:19:11,500 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 21:19:38] 2025-06-06 01:19:13,194 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139777698764608)>', '<ExcThread(monitor, started 139777051436800)>']
[2025-06-05 21:19:38] 2025-06-06 01:19:18,219 | INFO     | all workflow threads have been joined
[2025-06-05 21:19:38] 2025-06-06 01:19:18,219 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 21:19:38] 2025-06-06 01:19:18,219 | INFO     | traces error code: 0
[2025-06-05 21:19:38] 2025-06-06 01:19:18,220 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 21:19:38] 2025-06-06 01:19:38,231 | INFO     | PID=1460447 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-05 21:19:38] 2025-06-06 01:19:38,231 | INFO     | .. there are 9 such processes running
[2025-06-05 21:19:38] 2025-06-06 01:19:38,232 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 21:19:38] 2025-06-06 01:19:38,232 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 21:19:38] 2025-06-06 01:19:38,232 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 21:19:38] 2025-06-06 01:19:38,232 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 21:19:38] 2025-06-06 01:19:38,232 | INFO     | [monitor] control thread has ended
[2025-06-05 21:19:38] 2025-06-06 01:19:38,357 [wrapper] ==== pilot stdout END ====
[2025-06-05 21:19:38] 2025-06-06 01:19:38,359 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 21:19:38] 2025-06-06 01:19:38,362 [wrapper] pilotpid: 1460447
[2025-06-05 21:19:38] 2025-06-06 01:19:38,364 [wrapper] Pilot exit status: 0
[2025-06-05 21:19:38] 2025-06-06 01:19:38,373 [wrapper] pandaids: 6681380255
[2025-06-05 21:19:38] 2025-06-06 01:19:38,428 [wrapper] cleanup supervisor_pilot 1783001 1460448
[2025-06-05 21:19:38] 2025-06-06 01:19:38,431 [wrapper] Test setup, not cleaning
[2025-06-05 21:19:38] 2025-06-06 01:19:38,433 [wrapper] apfmon messages muted
[2025-06-05 21:19:38] 2025-06-06 01:19:38,436 [wrapper] ==== wrapper stdout END ====
[2025-06-05 21:19:38] 2025-06-06 01:19:38,438 [wrapper] ==== wrapper stderr END ====
[2025-06-05 21:19:38]  *** Error codes and diagnostics ***
[2025-06-05 21:19:38]     "exeErrorCode": 0,
[2025-06-05 21:19:38]     "exeErrorDiag": "",
[2025-06-05 21:19:38]     "pilotErrorCode": 0,
[2025-06-05 21:19:38]     "pilotErrorDiag": "",
[2025-06-05 21:19:38]  *** Listing of results directory ***
[2025-06-05 21:19:38] total 414960
[2025-06-05 21:19:38] -rw-r--r--. 1 boincer umatlas    529402 Jun  5 19:44 pilot3.tar.gz
[2025-06-05 21:19:38] -rwx------. 1 boincer umatlas     37140 Jun  5 19:49 runpilot2-wrapper.sh
[2025-06-05 21:19:38] -rw-r--r--. 1 boincer umatlas      5112 Jun  5 19:49 queuedata.json
[2025-06-05 21:19:38] -rw-r--r--. 1 boincer umatlas       100 Jun  5 19:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 21:19:38] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  5 19:50 run_atlas
[2025-06-05 21:19:38] -rw-r--r--. 1 boincer umatlas       105 Jun  5 19:50 job.xml
[2025-06-05 21:19:38] -rw-r--r--. 2 boincer umatlas 224106660 Jun  5 19:50 EVNT.44871834._003290.pool.root.1
[2025-06-05 21:19:38] -rw-r--r--. 2 boincer umatlas     15095 Jun  5 19:50 start_atlas.sh
[2025-06-05 21:19:38] drwxrwx--x. 2 boincer umatlas      4096 Jun  5 19:50 shared
[2025-06-05 21:19:38] -rw-r--r--. 2 boincer umatlas    541915 Jun  5 19:50 input.tar.gz
[2025-06-05 21:19:38] -rw-r--r--. 1 boincer umatlas         0 Jun  5 19:50 boinc_lockfile
[2025-06-05 21:19:38] -rw-r--r--. 1 boincer umatlas      2558 Jun  5 19:50 pandaJob.out
[2025-06-05 21:19:38] -rw-------. 1 boincer umatlas    987721 Jun  5 19:50 agis_schedconf.cvmfs.json
[2025-06-05 21:19:38] -rw-------. 1 boincer umatlas   1598969 Jun  5 19:50 agis_ddmendpoints.agis.ALL.json
[2025-06-05 21:19:38] drwx------. 4 boincer umatlas      4096 Jun  5 19:50 pilot3
[2025-06-05 21:19:38] -rw-r--r--. 1 boincer umatlas      6839 Jun  5 21:13 init_data.xml
[2025-06-05 21:19:38] -rw-r--r--. 1 boincer umatlas       529 Jun  5 21:18 boinc_task_state.xml
[2025-06-05 21:19:38] -rw-------. 1 boincer umatlas 195150189 Jun  5 21:18 HITS.44871837._102326.pool.root.1
[2025-06-05 21:19:38] -rw-------. 1 boincer umatlas      1042 Jun  5 21:18 memory_monitor_summary.json
[2025-06-05 21:19:38] -rw-------. 1 boincer umatlas    366231 Jun  5 21:18 log.44871837._102326.job.log.tgz.1
[2025-06-05 21:19:38] -rw-------. 1 boincer umatlas      7760 Jun  5 21:19 heartbeat.json
[2025-06-05 21:19:38] -rw-r--r--. 1 boincer umatlas      8192 Jun  5 21:19 boinc_mmap_file
[2025-06-05 21:19:38] -rw-r--r--. 1 boincer umatlas        27 Jun  5 21:19 wrapper_checkpoint.txt
[2025-06-05 21:19:38] -rw-------. 1 boincer umatlas       822 Jun  5 21:19 pilotlog.txt
[2025-06-05 21:19:38] -rw-------. 1 boincer umatlas        95 Jun  5 21:19 pilot_heartbeat.json
[2025-06-05 21:19:38] -rw-------. 1 boincer umatlas    518372 Jun  5 21:19 log.44871837._102326.job.log.1
[2025-06-05 21:19:38] -rw-------. 1 boincer umatlas       357 Jun  5 21:19 output.list
[2025-06-05 21:19:38] -rw-r--r--. 1 boincer umatlas       620 Jun  5 21:19 runtime_log
[2025-06-05 21:19:38] -rw-------. 1 boincer umatlas    901120 Jun  5 21:19 result.tar.gz
[2025-06-05 21:19:38] -rw-r--r--. 1 boincer umatlas      8667 Jun  5 21:19 runtime_log.err
[2025-06-05 21:19:38] -rw-------. 1 boincer umatlas       654 Jun  5 21:19 BciMDmUWZh7n9Rq4apOajLDm4fhM0noT9bVof3QYDmU5aKDmxB7uxm.diag
[2025-06-05 21:19:38] -rw-r--r--. 1 boincer umatlas     21480 Jun  5 21:19 stderr.txt
[2025-06-05 21:19:38] HITS file was successfully produced:
[2025-06-05 21:19:38] -rw-------. 1 boincer umatlas 195150189 Jun  5 21:18 shared/HITS.pool.root.1
[2025-06-05 21:19:38]  *** Contents of shared directory: ***
[2025-06-05 21:19:38] total 410868
[2025-06-05 21:19:38] -rw-r--r--. 2 boincer umatlas 224106660 Jun  5 19:50 ATLAS.root_0
[2025-06-05 21:19:38] -rw-r--r--. 2 boincer umatlas     15095 Jun  5 19:50 start_atlas.sh
[2025-06-05 21:19:38] -rw-r--r--. 2 boincer umatlas    541915 Jun  5 19:50 input.tar.gz
[2025-06-05 21:19:38] -rw-------. 1 boincer umatlas 195150189 Jun  5 21:18 HITS.pool.root.1
[2025-06-05 21:19:38] -rw-------. 1 boincer umatlas    901120 Jun  5 21:19 result.tar.gz
21:19:39 (1456557): run_atlas exited; CPU time 50057.964544
21:19:39 (1456557): called boinc_finish(0)

</stderr_txt>
]]>

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