Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
19:49:15 (1316): wrapper (7.7.26015): starting
19:49:15 (1316): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 19:49:15] Arguments: --nthreads 8
[2025-06-05 19:49:15] Threads: 8
[2025-06-05 19:49:15] Checking for CVMFS
[2025-06-05 19:49:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 19:49:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 19:49:16] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 19:49:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 19:49:17] 2.11.2.0 72091 3245 116120 146836 2 349 18363482 18432001 20601 130560 0 27282790 99.785 9298191 42501 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-05 19:49:17] CVMFS is ok
[2025-06-05 19:49:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 19:49:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 19:49:17] Further information can be found at the LHC@home message board.
[2025-06-05 19:49:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 19:49:17] Checking for apptainer binary...
[2025-06-05 19:49:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 19:49:17] Running /usr/bin/apptainer --version
[2025-06-05 19:49:17] apptainer version 1.3.2-1.el7
[2025-06-05 19:49:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 19:49:24] c-212-4.aglt2.org
[2025-06-05 19:49:24] apptainer works
[2025-06-05 19:49:24] Set ATHENA_PROC_NUMBER=8
[2025-06-05 19:49:24] Set ATHENA_CORE_NUMBER=8
[2025-06-05 19:49:24] Starting ATLAS job with PandaID=6668690064
[2025-06-05 19:49:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 22:22:35]  *** The last 200 lines of the pilot log: ***
[2025-06-05 22:22:35] 2025-06-06 02:22:22,748 | INFO     | extracted standard info from prmon json
[2025-06-05 22:22:35] 2025-06-06 02:22:22,748 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 22:22:35] 2025-06-06 02:22:22,748 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 22:22:35] 2025-06-06 02:22:22,748 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 22:22:35] 2025-06-06 02:22:22,748 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 22:22:35] 2025-06-06 02:22:22,750 | INFO     | fitting pss+swap vs Time
[2025-06-05 22:22:35] 2025-06-06 02:22:22,751 | INFO     | sum of square deviations: 964983004.4931524
[2025-06-05 22:22:35] 2025-06-06 02:22:22,751 | INFO     | sum of deviations: 8593606248.20548
[2025-06-05 22:22:35] 2025-06-06 02:22:22,751 | INFO     | mean x: 1749172100.5068493
[2025-06-05 22:22:35] 2025-06-06 02:22:22,751 | INFO     | mean y: 2463254.794520548
[2025-06-05 22:22:35] 2025-06-06 02:22:22,751 | INFO     | -- intersect: -15574698438.325256
[2025-06-05 22:22:35] 2025-06-06 02:22:22,752 | INFO     | intersect: -15574698438.325256
[2025-06-05 22:22:35] 2025-06-06 02:22:22,752 | INFO     | chi2: 2.9764301235579476
[2025-06-05 22:22:35] 2025-06-06 02:22:22,752 | INFO     | sum of square deviations: 869195466.9929086
[2025-06-05 22:22:35] 2025-06-06 02:22:22,752 | INFO     | sum of deviations: 17741500785.60994
[2025-06-05 22:22:35] 2025-06-06 02:22:22,753 | INFO     | mean x: 1749171948.0070922
[2025-06-05 22:22:35] 2025-06-06 02:22:22,753 | INFO     | mean y: 2477393.390070922
[2025-06-05 22:22:35] 2025-06-06 02:22:22,753 | INFO     | -- intersect: -35700579822.37873
[2025-06-05 22:22:35] 2025-06-06 02:22:22,753 | INFO     | intersect: -35700579822.37873
[2025-06-05 22:22:35] 2025-06-06 02:22:22,753 | INFO     | chi2: 2.2271376734436417
[2025-06-05 22:22:35] 2025-06-06 02:22:22,753 | INFO     | current chi2=2.2271376734436417 (change=25.174199259165576 %)
[2025-06-05 22:22:35] 2025-06-06 02:22:22,753 | INFO     | sum of square deviations: 779966191.9926479
[2025-06-05 22:22:35] 2025-06-06 02:22:22,754 | INFO     | sum of deviations: 17040032606.970585
[2025-06-05 22:22:35] 2025-06-06 02:22:22,754 | INFO     | mean x: 1749171795.5073528
[2025-06-05 22:22:35] 2025-06-06 02:22:22,754 | INFO     | mean y: 2476194.029411765
[2025-06-05 22:22:35] 2025-06-06 02:22:22,754 | INFO     | -- intersect: -38211929425.899734
[2025-06-05 22:22:35] 2025-06-06 02:22:22,754 | INFO     | intersect: -38211929425.899734
[2025-06-05 22:22:35] 2025-06-06 02:22:22,754 | INFO     | chi2: 2.2312616778800423
[2025-06-05 22:22:35] 2025-06-06 02:22:22,754 | INFO     | current chi2=2.2312616778800423 (change=-0.18517061094045364 %)
[2025-06-05 22:22:35] 2025-06-06 02:22:22,754 | INFO     | right removable region: 135
[2025-06-05 22:22:35] 2025-06-06 02:22:22,754 | INFO     | sum of square deviations: 869194856.9929086
[2025-06-05 22:22:35] 2025-06-06 02:22:22,755 | INFO     | sum of deviations: -20044310499.297867
[2025-06-05 22:22:35] 2025-06-06 02:22:22,755 | INFO     | mean x: 1749172253.0070922
[2025-06-05 22:22:35] 2025-06-06 02:22:22,755 | INFO     | mean y: 2508275.2978723403
[2025-06-05 22:22:35] 2025-06-06 02:22:22,755 | INFO     | -- intersect: 40339783023.25075
[2025-06-05 22:22:35] 2025-06-06 02:22:22,755 | INFO     | intersect: 40339783023.25075
[2025-06-05 22:22:35] 2025-06-06 02:22:22,755 | INFO     | chi2: 0.9028144357623267
[2025-06-05 22:22:35] 2025-06-06 02:22:22,755 | INFO     | current chi2=0.9028144357623267 (change=69.66787734686928 %)
[2025-06-05 22:22:35] 2025-06-06 02:22:22,755 | INFO     | sum of square deviations: 779964971.9926479
[2025-06-05 22:22:35] 2025-06-06 02:22:22,756 | INFO     | sum of deviations: -18300830978.66176
[2025-06-05 22:22:35] 2025-06-06 02:22:22,756 | INFO     | mean x: 1749172405.5073528
[2025-06-05 22:22:35] 2025-06-06 02:22:22,756 | INFO     | mean y: 2505195.661764706
[2025-06-05 22:22:35] 2025-06-06 02:22:22,756 | INFO     | -- intersect: 41044487457.951126
[2025-06-05 22:22:35] 2025-06-06 02:22:22,756 | INFO     | intersect: 41044487457.951126
[2025-06-05 22:22:35] 2025-06-06 02:22:22,756 | INFO     | chi2: 0.8867552405461376
[2025-06-05 22:22:35] 2025-06-06 02:22:22,757 | INFO     | current chi2=0.8867552405461376 (change=1.7787924716366355 %)
[2025-06-05 22:22:35] 2025-06-06 02:22:22,757 | INFO     | left removable region: 20
[2025-06-05 22:22:35] 2025-06-06 02:22:22,757 | INFO     | sum of square deviations: 471568552.99130464
[2025-06-05 22:22:35] 2025-06-06 02:22:22,757 | INFO     | sum of deviations: 479706974.70434785
[2025-06-05 22:22:35] 2025-06-06 02:22:22,757 | INFO     | mean x: 1749172375.0086956
[2025-06-05 22:22:35] 2025-06-06 02:22:22,757 | INFO     | mean y: 2501818.295652174
[2025-06-05 22:22:35] 2025-06-06 02:22:22,757 | INFO     | -- intersect: -1776858113.4242067
[2025-06-05 22:22:35] 2025-06-06 02:22:22,757 | INFO     | intersect: -1776858113.4242067
[2025-06-05 22:22:35] 2025-06-06 02:22:22,758 | INFO     | chi2: 0.013168549101019167
[2025-06-05 22:22:35] 2025-06-06 02:22:22,758 | INFO     | -- intersect: -1776858113.4242067
[2025-06-05 22:22:35] 2025-06-06 02:22:22,758 | INFO     | current memory leak: 1.02 B/s (using 115 data points, chi2=0.01)
[2025-06-05 22:22:35] 2025-06-06 02:22:22,758 | INFO     | ..............................
[2025-06-05 22:22:35] 2025-06-06 02:22:22,758 | INFO     | . Timing measurements:
[2025-06-05 22:22:35] 2025-06-06 02:22:22,758 | INFO     | . get job = 0 s
[2025-06-05 22:22:35] 2025-06-06 02:22:22,758 | INFO     | . initial setup = 5 s
[2025-06-05 22:22:35] 2025-06-06 02:22:22,758 | INFO     | . payload setup = 74 s
[2025-06-05 22:22:35] 2025-06-06 02:22:22,758 | INFO     | . stage-in = 0 s
[2025-06-05 22:22:35] 2025-06-06 02:22:22,758 | INFO     | . payload execution = 8923 s
[2025-06-05 22:22:35] 2025-06-06 02:22:22,759 | INFO     | . stage-out = 0 s
[2025-06-05 22:22:35] 2025-06-06 02:22:22,759 | INFO     | . log creation = 0 s
[2025-06-05 22:22:35] 2025-06-06 02:22:22,759 | INFO     | ..............................
[2025-06-05 22:22:35] 2025-06-06 02:22:23,237 | INFO     | 
[2025-06-05 22:22:35] 2025-06-06 02:22:23,237 | INFO     | job summary report
[2025-06-05 22:22:35] 2025-06-06 02:22:23,237 | INFO     | --------------------------------------------------
[2025-06-05 22:22:35] 2025-06-06 02:22:23,237 | INFO     | PanDA job id: 6668690064
[2025-06-05 22:22:35] 2025-06-06 02:22:23,237 | INFO     | task id: 44871837
[2025-06-05 22:22:35] 2025-06-06 02:22:23,237 | INFO     | errors: (none)
[2025-06-05 22:22:35] 2025-06-06 02:22:23,237 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 22:22:35] 2025-06-06 02:22:23,237 | INFO     | pilot state: finished 
[2025-06-05 22:22:35] 2025-06-06 02:22:23,237 | INFO     | transexitcode: 0
[2025-06-05 22:22:35] 2025-06-06 02:22:23,238 | INFO     | exeerrorcode: 0
[2025-06-05 22:22:35] 2025-06-06 02:22:23,238 | INFO     | exeerrordiag: 
[2025-06-05 22:22:35] 2025-06-06 02:22:23,238 | INFO     | exitcode: 0
[2025-06-05 22:22:35] 2025-06-06 02:22:23,238 | INFO     | exitmsg: OK
[2025-06-05 22:22:35] 2025-06-06 02:22:23,238 | INFO     | cpuconsumptiontime: 43766 s
[2025-06-05 22:22:35] 2025-06-06 02:22:23,238 | INFO     | nevents: 400
[2025-06-05 22:22:35] 2025-06-06 02:22:23,238 | INFO     | neventsw: 0
[2025-06-05 22:22:35] 2025-06-06 02:22:23,238 | INFO     | pid: 16451
[2025-06-05 22:22:35] 2025-06-06 02:22:23,238 | INFO     | pgrp: 16451
[2025-06-05 22:22:35] 2025-06-06 02:22:23,238 | INFO     | corecount: 8
[2025-06-05 22:22:35] 2025-06-06 02:22:23,238 | INFO     | event service: False
[2025-06-05 22:22:35] 2025-06-06 02:22:23,238 | INFO     | sizes: {0: 2397165, 1: 2397420, 12: 2397420, 23: 2397448, 33: 2397476, 42: 2397738, 44: 2397922, 9001: 2434907, 9004: 2434907, 9007: 2435077}
[2025-06-05 22:22:35] 2025-06-06 02:22:23,238 | INFO     | --------------------------------------------------
[2025-06-05 22:22:35] 2025-06-06 02:22:23,238 | INFO     | 
[2025-06-05 22:22:35] 2025-06-06 02:22:23,238 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-05 22:22:35] 2025-06-06 02:22:23,253 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 22:22:35] 2025-06-06 02:22:23,253 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 22:22:35] 2025-06-06 02:22:23,253 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 22:22:35] 2025-06-06 02:22:23,253 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 22:22:35] 2025-06-06 02:22:23,253 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 22:22:35] 2025-06-06 02:22:23,253 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 22:22:35] 2025-06-06 02:22:23,253 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 22:22:35] 2025-06-06 02:22:23,253 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 22:22:35] 2025-06-06 02:22:23,254 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 22:22:35] 2025-06-06 02:22:23,254 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 22:22:35] 2025-06-06 02:22:23,254 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 22:22:35] 2025-06-06 02:22:23,254 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 22:22:35] 2025-06-06 02:22:23,254 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 22:22:35] 2025-06-06 02:22:23,254 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 22:22:35] 2025-06-06 02:22:23,254 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 22:22:35] 2025-06-06 02:22:23,254 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 22:22:35] 2025-06-06 02:22:23,254 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 22:22:35] 2025-06-06 02:22:23,254 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 22:22:35] 2025-06-06 02:22:23,254 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 22:22:35] 2025-06-06 02:22:23,254 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 22:22:35] 2025-06-06 02:22:23,254 | INFO     | job 6668690064 has completed (purged errors)
[2025-06-05 22:22:35] 2025-06-06 02:22:23,254 | INFO     | overall cleanup function is called
[2025-06-05 22:22:35] 2025-06-06 02:22:23,534 | INFO     | 9100s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-06-05 22:22:35] 2025-06-06 02:22:24,263 | INFO     | --- collectZombieJob: --- 10, [16451]
[2025-06-05 22:22:35] 2025-06-06 02:22:24,263 | INFO     | zombie collector waiting for pid 16451
[2025-06-05 22:22:35] 2025-06-06 02:22:24,263 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 22:22:35] 2025-06-06 02:22:24,263 | INFO     | collected zombie processes
[2025-06-05 22:22:35] 2025-06-06 02:22:24,263 | INFO     | will attempt to kill all subprocesses of pid=16451
[2025-06-05 22:22:35] 2025-06-06 02:22:24,459 | INFO     | process IDs to be killed: [16451] (in reverse order)
[2025-06-05 22:22:35] 2025-06-06 02:22:24,523 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 22:22:35] 2025-06-06 02:22:24,524 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 22:22:35] 2025-06-06 02:22:24,531 | INFO     | did not find any defunct processes belonging to 16451
[2025-06-05 22:22:35] 2025-06-06 02:22:24,539 | INFO     | did not find any defunct processes belonging to 16451
[2025-06-05 22:22:35] 2025-06-06 02:22:24,539 | INFO     | ready for new job
[2025-06-05 22:22:35] 2025-06-06 02:22:24,539 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 22:22:35] 2025-06-06 02:22:24,541 | INFO     | **************************************
[2025-06-05 22:22:35] 2025-06-06 02:22:24,541 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 22:22:35] 2025-06-06 02:22:24,541 | INFO     | **************************************
[2025-06-05 22:22:35] 2025-06-06 02:22:24,541 | INFO     | 
[2025-06-05 22:22:35] 2025-06-06 02:22:24,545 | INFO     | architecture information:
[2025-06-05 22:22:35] 2025-06-06 02:22:24,545 | INFO     | executing command: cat /etc/os-release
[2025-06-05 22:22:35] 2025-06-06 02:22:24,561 | INFO     | cat /etc/os-release:
[2025-06-05 22:22:35] NAME="CentOS Linux"
[2025-06-05 22:22:35] VERSION="7 (Core)"
[2025-06-05 22:22:35] ID="centos"
[2025-06-05 22:22:35] ID_LIKE="rhel fedora"
[2025-06-05 22:22:35] VERSION_ID="7"
[2025-06-05 22:22:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 22:22:35] ANSI_COLOR="0;31"
[2025-06-05 22:22:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 22:22:35] HOME_URL="https://www.centos.org/"
[2025-06-05 22:22:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 22:22:35] 
[2025-06-05 22:22:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 22:22:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 22:22:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 22:22:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 22:22:35] 
[2025-06-05 22:22:35] 2025-06-06 02:22:24,561 | INFO     | **************************************
[2025-06-05 22:22:35] 2025-06-06 02:22:25,064 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-05 22:22:35] 2025-06-06 02:22:25,077 | INFO     | sufficient remaining disk space (106672685056 B)
[2025-06-05 22:22:35] 2025-06-06 02:22:25,077 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 22:22:35] 2025-06-06 02:22:25,077 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 22:22:35] 2025-06-06 02:22:25,077 | INFO     | update_server=False
[2025-06-05 22:22:35] 2025-06-06 02:22:25,077 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 22:22:35] 2025-06-06 02:22:25,078 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 22:22:35] 2025-06-06 02:22:25,078 | INFO     | aborting loop
[2025-06-05 22:22:35] 2025-06-06 02:22:25,078 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 22:22:35] 2025-06-06 02:22:25,078 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 22:22:35] 2025-06-06 02:22:25,078 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 22:22:35] 2025-06-06 02:22:25,078 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 22:22:35] 2025-06-06 02:22:25,231 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 22:22:35] 2025-06-06 02:22:25,259 | INFO     | all payload control threads have been joined
[2025-06-05 22:22:35] 2025-06-06 02:22:25,461 | INFO     | all data control threads have been joined
[2025-06-05 22:22:35] 2025-06-06 02:22:25,705 | INFO     | all job control threads have been joined
[2025-06-05 22:22:35] 2025-06-06 02:22:26,083 | INFO     | [job] job monitor thread has finished
[2025-06-05 22:22:35] 2025-06-06 02:22:26,084 | INFO     | [job] retrieve thread has finished
[2025-06-05 22:22:35] 2025-06-06 02:22:26,131 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 22:22:35] 2025-06-06 02:22:26,153 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 22:22:35] 2025-06-06 02:22:26,264 | INFO     | [payload] control thread has finished
[2025-06-05 22:22:35] 2025-06-06 02:22:26,315 | INFO     | [job] validate thread has finished
[2025-06-05 22:22:35] 2025-06-06 02:22:26,420 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 22:22:35] 2025-06-06 02:22:26,467 | INFO     | [data] control thread has finished
[2025-06-05 22:22:35] 2025-06-06 02:22:26,711 | INFO     | [job] control thread has finished
[2025-06-05 22:22:35] 2025-06-06 02:22:26,988 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 22:22:35] 2025-06-06 02:22:27,120 | INFO     | [payload] validate_post thread has finished
[2025-06-05 22:22:35] 2025-06-06 02:22:27,237 | INFO     | [data] copytool_out thread has finished
[2025-06-05 22:22:35] 2025-06-06 02:22:27,454 | INFO     | [payload] failed_post thread has finished
[2025-06-05 22:22:35] 2025-06-06 02:22:27,495 | INFO     | [data] copytool_in thread has finished
[2025-06-05 22:22:35] 2025-06-06 02:22:27,503 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 22:22:35] 2025-06-06 02:22:27,842 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 22:22:35] 2025-06-06 02:22:28,847 | INFO     | [job] queue monitor thread has finished
[2025-06-05 22:22:35] 2025-06-06 02:22:30,160 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 22:22:35] 2025-06-06 02:22:30,204 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140550507677504)>', '<ExcThread(monitor, started 140549768075008)>']
[2025-06-05 22:22:35] 2025-06-06 02:22:31,112 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 22:22:35] 2025-06-06 02:22:31,113 | INFO     | [monitor] control thread has ended
[2025-06-05 22:22:35] 2025-06-06 02:22:35,230 | INFO     | all workflow threads have been joined
[2025-06-05 22:22:35] 2025-06-06 02:22:35,230 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 22:22:35] 2025-06-06 02:22:35,230 | INFO     | traces error code: 0
[2025-06-05 22:22:35] 2025-06-06 02:22:35,230 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 22:22:35] 2025-06-06 02:22:35,348 [wrapper] ==== pilot stdout END ====
[2025-06-05 22:22:35] 2025-06-06 02:22:35,351 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 22:22:35] 2025-06-06 02:22:35,353 [wrapper] pilotpid: 8126
[2025-06-05 22:22:35] 2025-06-06 02:22:35,356 [wrapper] Pilot exit status: 0
[2025-06-05 22:22:35] 2025-06-06 02:22:35,364 [wrapper] pandaids: 6668690064
[2025-06-05 22:22:35] 2025-06-06 02:22:35,407 [wrapper] cleanup supervisor_pilot 72986 8127
[2025-06-05 22:22:35] 2025-06-06 02:22:35,410 [wrapper] Test setup, not cleaning
[2025-06-05 22:22:35] 2025-06-06 02:22:35,412 [wrapper] apfmon messages muted
[2025-06-05 22:22:35] 2025-06-06 02:22:35,413 [wrapper] ==== wrapper stdout END ====
[2025-06-05 22:22:35] 2025-06-06 02:22:35,415 [wrapper] ==== wrapper stderr END ====
[2025-06-05 22:22:35]  *** Error codes and diagnostics ***
[2025-06-05 22:22:35]     "exeErrorCode": 0,
[2025-06-05 22:22:35]     "exeErrorDiag": "",
[2025-06-05 22:22:35]     "pilotErrorCode": 0,
[2025-06-05 22:22:35]     "pilotErrorDiag": "",
[2025-06-05 22:22:35]  *** Listing of results directory ***
[2025-06-05 22:22:35] total 414448
[2025-06-05 22:22:35] -rw-r--r-- 1 boincer umatlas    495897 May 28 13:15 pilot3.tar.gz
[2025-06-05 22:22:35] -rwx------ 1 boincer umatlas     37140 May 28 13:18 runpilot2-wrapper.sh
[2025-06-05 22:22:35] -rw-r--r-- 1 boincer umatlas      5111 May 28 13:18 queuedata.json
[2025-06-05 22:22:35] -rw-r--r-- 1 boincer umatlas       100 Jun  5 19:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 22:22:35] -rwxr-xr-x 1 boincer umatlas      7986 Jun  5 19:49 run_atlas
[2025-06-05 22:22:35] -rw-r--r-- 1 boincer umatlas       105 Jun  5 19:49 job.xml
[2025-06-05 22:22:35] -rw-r--r-- 2 boincer umatlas 225339903 Jun  5 19:49 EVNT.44871834._003415.pool.root.1
[2025-06-05 22:22:35] -rw-r--r-- 2 boincer umatlas     15093 Jun  5 19:49 start_atlas.sh
[2025-06-05 22:22:35] drwxrwx--x 2 boincer umatlas      4096 Jun  5 19:49 shared
[2025-06-05 22:22:35] -rw-r--r-- 2 boincer umatlas    508877 Jun  5 19:49 input.tar.gz
[2025-06-05 22:22:35] -rw-r--r-- 1 boincer umatlas         0 Jun  5 19:49 boinc_lockfile
[2025-06-05 22:22:35] -rw-r--r-- 1 boincer umatlas      2559 Jun  5 19:49 pandaJob.out
[2025-06-05 22:22:35] -rw------- 1 boincer umatlas    987721 Jun  5 19:50 agis_schedconf.cvmfs.json
[2025-06-05 22:22:35] -rw------- 1 boincer umatlas   1598969 Jun  5 19:50 agis_ddmendpoints.agis.ALL.json
[2025-06-05 22:22:35] drwx------ 4 boincer umatlas      4096 Jun  5 19:50 pilot3
[2025-06-05 22:22:35] -rw-r--r-- 1 boincer umatlas      6386 Jun  5 22:21 init_data.xml
[2025-06-05 22:22:35] -rw------- 1 boincer umatlas 192870992 Jun  5 22:21 HITS.44871837._087667.pool.root.1
[2025-06-05 22:22:35] -rw-r--r-- 1 boincer umatlas       529 Jun  5 22:21 boinc_task_state.xml
[2025-06-05 22:22:35] -rw------- 1 boincer umatlas      1091 Jun  5 22:22 memory_monitor_summary.json
[2025-06-05 22:22:35] -rw------- 1 boincer umatlas        95 Jun  5 22:22 pilot_heartbeat.json
[2025-06-05 22:22:35] -rw------- 1 boincer umatlas    355175 Jun  5 22:22 log.44871837._087667.job.log.tgz.1
[2025-06-05 22:22:35] -rw------- 1 boincer umatlas      7758 Jun  5 22:22 heartbeat.json
[2025-06-05 22:22:35] -rw-r--r-- 1 boincer umatlas      8192 Jun  5 22:22 boinc_mmap_file
[2025-06-05 22:22:35] -rw-r--r-- 1 boincer umatlas        27 Jun  5 22:22 wrapper_checkpoint.txt
[2025-06-05 22:22:35] -rw------- 1 boincer umatlas      4477 Jun  5 22:22 pilotlog.txt
[2025-06-05 22:22:35] -rw------- 1 boincer umatlas    818912 Jun  5 22:22 log.44871837._087667.job.log.1
[2025-06-05 22:22:35] -rw------- 1 boincer umatlas       357 Jun  5 22:22 output.list
[2025-06-05 22:22:35] -rw-r--r-- 1 boincer umatlas       620 Jun  5 22:22 runtime_log
[2025-06-05 22:22:35] -rw------- 1 boincer umatlas   1198080 Jun  5 22:22 result.tar.gz
[2025-06-05 22:22:35] -rw------- 1 boincer umatlas       659 Jun  5 22:22 uqNODmFbZe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmpfcKDmrwCxYm.diag
[2025-06-05 22:22:35] -rw-r--r-- 1 boincer umatlas      8654 Jun  5 22:22 runtime_log.err
[2025-06-05 22:22:35] -rw-r--r-- 1 boincer umatlas     20920 Jun  5 22:22 stderr.txt
[2025-06-05 22:22:35] HITS file was successfully produced:
[2025-06-05 22:22:35] -rw------- 1 boincer umatlas 192870992 Jun  5 22:21 shared/HITS.pool.root.1
[2025-06-05 22:22:35]  *** Contents of shared directory: ***
[2025-06-05 22:22:35] total 410104
[2025-06-05 22:22:35] -rw-r--r-- 2 boincer umatlas 225339903 Jun  5 19:49 ATLAS.root_0
[2025-06-05 22:22:35] -rw-r--r-- 2 boincer umatlas     15093 Jun  5 19:49 start_atlas.sh
[2025-06-05 22:22:35] -rw-r--r-- 2 boincer umatlas    508877 Jun  5 19:49 input.tar.gz
[2025-06-05 22:22:35] -rw------- 1 boincer umatlas 192870992 Jun  5 22:21 HITS.pool.root.1
[2025-06-05 22:22:35] -rw------- 1 boincer umatlas   1198080 Jun  5 22:22 result.tar.gz
22:22:37 (1316): run_atlas exited; CPU time 43470.090335
22:22:37 (1316): called boinc_finish(0)

</stderr_txt>
]]>

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