Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
09:38:53 (1574720): wrapper (7.7.26015): starting
09:38:53 (1574720): wrapper: running run_atlas (--nthreads 12)
[2025-06-06 09:38:53] Arguments: --nthreads 12
[2025-06-06 09:38:53] Threads: 12
[2025-06-06 09:38:53] Checking for CVMFS
[2025-06-06 09:38:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 09:38:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 09:38:54] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 09:38:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 09:38:56] 2.12.7.0 16016 4452 63340 146847 3 187 2793910 4096001 912 130560 0 4211538 99.992 1027108 135 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-06-06 09:38:56] CVMFS is ok
[2025-06-06 09:38:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 09:38:56] Small home clusters do not require a local http proxy but it is suggested if
[2025-06-06 09:38:56] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-06-06 09:38:56] Further information can be found at the LHC@home message board.
[2025-06-06 09:38:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 09:38:56] Checking for apptainer binary...
[2025-06-06 09:38:56] apptainer is not installed, using version from CVMFS
[2025-06-06 09:38:56] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 09:38:57] g3250
[2025-06-06 09:38:57] apptainer works
[2025-06-06 09:38:57] Set ATHENA_PROC_NUMBER=12
[2025-06-06 09:38:57] Set ATHENA_CORE_NUMBER=12
[2025-06-06 09:38:57] Starting ATLAS job with PandaID=6668442766
[2025-06-06 09:38:57] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 13:50:13]  *** The last 200 lines of the pilot log: ***
[2025-06-06 13:50:13] 2025-06-06 13:49:46,095 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 13:50:13] 2025-06-06 13:49:48,606 | INFO     | monitor loop #1120: job 0:6668442766 is in state 'finished'
[2025-06-06 13:50:13] 2025-06-06 13:49:48,607 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 13:50:13] 2025-06-06 13:49:51,118 | INFO     | monitor loop #1121: job 0:6668442766 is in state 'finished'
[2025-06-06 13:50:13] 2025-06-06 13:49:51,119 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 13:50:13] 2025-06-06 13:49:51,963 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-06 13:50:13] 2025-06-06 13:49:51,963 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6668442766/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 13:50:13] 2025-06-06 13:49:51,963 | INFO     | extracted standard info from prmon json
[2025-06-06 13:50:13] 2025-06-06 13:49:51,964 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 13:50:13] 2025-06-06 13:49:51,964 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 13:50:13] 2025-06-06 13:49:51,971 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 13:50:13] 2025-06-06 13:49:51,971 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 13:50:13] 2025-06-06 13:49:51,979 | INFO     | fitting pss+swap vs Time
[2025-06-06 13:50:13] 2025-06-06 13:49:51,979 | INFO     | sum of square deviations: 4394577280.5
[2025-06-06 13:50:13] 2025-06-06 13:49:51,981 | INFO     | sum of deviations: 38642339993.5
[2025-06-06 13:50:13] 2025-06-06 13:49:51,981 | INFO     | mean x: 1749210300.5
[2025-06-06 13:50:13] 2025-06-06 13:49:51,981 | INFO     | mean y: 2655550.3099173554
[2025-06-06 13:50:13] 2025-06-06 13:49:51,981 | INFO     | -- intersect: -15378477796.004278
[2025-06-06 13:50:13] 2025-06-06 13:49:51,981 | INFO     | intersect: -15378477796.004278
[2025-06-06 13:50:13] 2025-06-06 13:49:51,981 | INFO     | chi2: 3.3264098088833656
[2025-06-06 13:50:13] 2025-06-06 13:49:51,982 | INFO     | sum of square deviations: 4127772278.0
[2025-06-06 13:50:13] 2025-06-06 13:49:51,991 | INFO     | sum of deviations: 55449455731.00001
[2025-06-06 13:50:13] 2025-06-06 13:49:51,991 | INFO     | mean x: 1749210148.0
[2025-06-06 13:50:13] 2025-06-06 13:49:51,992 | INFO     | mean y: 2664985.565400844
[2025-06-06 13:50:13] 2025-06-06 13:49:51,992 | INFO     | -- intersect: -23494937142.994167
[2025-06-06 13:50:13] 2025-06-06 13:49:51,992 | INFO     | intersect: -23494937142.994167
[2025-06-06 13:50:13] 2025-06-06 13:49:51,992 | INFO     | chi2: 2.5089629225498236
[2025-06-06 13:50:13] 2025-06-06 13:49:51,992 | INFO     | current chi2=2.5089629225498236 (change=24.57444912982471 %)
[2025-06-06 13:50:13] 2025-06-06 13:49:51,992 | INFO     | right removable region: 236
[2025-06-06 13:50:13] 2025-06-06 13:49:51,993 | INFO     | sum of square deviations: 4127772278.0
[2025-06-06 13:50:13] 2025-06-06 13:49:51,994 | INFO     | sum of deviations: -19893240456.0
[2025-06-06 13:50:13] 2025-06-06 13:49:51,994 | INFO     | mean x: 1749210453.0
[2025-06-06 13:50:13] 2025-06-06 13:49:52,002 | INFO     | mean y: 2688830.8270042194
[2025-06-06 13:50:13] 2025-06-06 13:49:52,003 | INFO     | -- intersect: 8432772131.482789
[2025-06-06 13:50:13] 2025-06-06 13:49:52,003 | INFO     | intersect: 8432772131.482789
[2025-06-06 13:50:13] 2025-06-06 13:49:52,003 | INFO     | chi2: 1.0695011520877806
[2025-06-06 13:50:13] 2025-06-06 13:49:52,003 | INFO     | current chi2=1.0695011520877806 (change=67.84818427267689 %)
[2025-06-06 13:50:13] 2025-06-06 13:49:52,003 | INFO     | sum of square deviations: 3871990738.0
[2025-06-06 13:50:13] 2025-06-06 13:49:52,005 | INFO     | sum of deviations: -34558247375.49999
[2025-06-06 13:50:13] 2025-06-06 13:49:52,005 | INFO     | mean x: 1749210605.5
[2025-06-06 13:50:13] 2025-06-06 13:49:52,005 | INFO     | mean y: 2697554.8232758623
[2025-06-06 13:50:13] 2025-06-06 13:49:52,005 | INFO     | -- intersect: 15614732011.274792
[2025-06-06 13:50:13] 2025-06-06 13:49:52,005 | INFO     | intersect: 15614732011.274792
[2025-06-06 13:50:13] 2025-06-06 13:49:52,006 | INFO     | chi2: 0.9330226436031204
[2025-06-06 13:50:13] 2025-06-06 13:49:52,006 | INFO     | current chi2=0.9330226436031204 (change=12.760950113820785 %)
[2025-06-06 13:50:13] 2025-06-06 13:49:52,006 | INFO     | left removable region: 20
[2025-06-06 13:50:13] 2025-06-06 13:49:52,006 | INFO     | sum of square deviations: 3124858590.0
[2025-06-06 13:50:13] 2025-06-06 13:49:52,015 | INFO     | sum of deviations: -9653481037.500002
[2025-06-06 13:50:13] 2025-06-06 13:49:52,016 | INFO     | mean x: 1749210727.5
[2025-06-06 13:50:13] 2025-06-06 13:49:52,016 | INFO     | mean y: 2703440.9768518517
[2025-06-06 13:50:13] 2025-06-06 13:49:52,016 | INFO     | -- intersect: 5406459195.733368
[2025-06-06 13:50:13] 2025-06-06 13:49:52,016 | INFO     | intersect: 5406459195.733368
[2025-06-06 13:50:13] 2025-06-06 13:49:52,016 | INFO     | chi2: 0.0736633988827543
[2025-06-06 13:50:13] 2025-06-06 13:49:52,016 | INFO     | -- intersect: 5406459195.733368
[2025-06-06 13:50:13] 2025-06-06 13:49:52,017 | INFO     | current memory leak: -3.09 B/s (using 216 data points, chi2=0.07)
[2025-06-06 13:50:13] 2025-06-06 13:49:52,017 | INFO     | ..............................
[2025-06-06 13:50:13] 2025-06-06 13:49:52,017 | INFO     | . Timing measurements:
[2025-06-06 13:50:13] 2025-06-06 13:49:52,017 | INFO     | . get job = 0 s
[2025-06-06 13:50:13] 2025-06-06 13:49:52,017 | INFO     | . initial setup = 4 s
[2025-06-06 13:50:13] 2025-06-06 13:49:52,017 | INFO     | . payload setup = 53 s
[2025-06-06 13:50:13] 2025-06-06 13:49:52,018 | INFO     | . stage-in = 0 s
[2025-06-06 13:50:13] 2025-06-06 13:49:52,018 | INFO     | . payload execution = 14784 s
[2025-06-06 13:50:13] 2025-06-06 13:49:52,018 | INFO     | . stage-out = 3 s
[2025-06-06 13:50:13] 2025-06-06 13:49:52,018 | INFO     | . log creation = 0 s
[2025-06-06 13:50:13] 2025-06-06 13:49:52,018 | INFO     | ..............................
[2025-06-06 13:50:13] 2025-06-06 13:49:52,254 | INFO     | 
[2025-06-06 13:50:13] 2025-06-06 13:49:52,255 | INFO     | job summary report
[2025-06-06 13:50:13] 2025-06-06 13:49:52,255 | INFO     | --------------------------------------------------
[2025-06-06 13:50:13] 2025-06-06 13:49:52,255 | INFO     | PanDA job id: 6668442766
[2025-06-06 13:50:13] 2025-06-06 13:49:52,255 | INFO     | task id: 44871837
[2025-06-06 13:50:13] 2025-06-06 13:49:52,255 | INFO     | errors: (none)
[2025-06-06 13:50:13] 2025-06-06 13:49:52,255 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 13:50:13] 2025-06-06 13:49:52,255 | INFO     | pilot state: finished 
[2025-06-06 13:50:13] 2025-06-06 13:49:52,255 | INFO     | transexitcode: 0
[2025-06-06 13:50:13] 2025-06-06 13:49:52,255 | INFO     | exeerrorcode: 0
[2025-06-06 13:50:13] 2025-06-06 13:49:52,255 | INFO     | exeerrordiag: 
[2025-06-06 13:50:13] 2025-06-06 13:49:52,255 | INFO     | exitcode: 0
[2025-06-06 13:50:13] 2025-06-06 13:49:52,255 | INFO     | exitmsg: OK
[2025-06-06 13:50:13] 2025-06-06 13:49:52,256 | INFO     | cpuconsumptiontime: 53340 s
[2025-06-06 13:50:13] 2025-06-06 13:49:52,256 | INFO     | nevents: 400
[2025-06-06 13:50:13] 2025-06-06 13:49:52,256 | INFO     | neventsw: 0
[2025-06-06 13:50:13] 2025-06-06 13:49:52,256 | INFO     | pid: 1584798
[2025-06-06 13:50:13] 2025-06-06 13:49:52,256 | INFO     | pgrp: 1584798
[2025-06-06 13:50:13] 2025-06-06 13:49:52,256 | INFO     | corecount: 12
[2025-06-06 13:50:13] 2025-06-06 13:49:52,256 | INFO     | event service: False
[2025-06-06 13:50:13] 2025-06-06 13:49:52,256 | INFO     | sizes: {0: 2397244, 1: 2397443, 12: 2397443, 23: 2397471, 32: 2397705, 33: 2397733, 14841: 2428484, 14846: 2437471, 14849: 2437527, 14925: 2437697}
[2025-06-06 13:50:13] 2025-06-06 13:49:52,256 | INFO     | --------------------------------------------------
[2025-06-06 13:50:13] 2025-06-06 13:49:52,256 | INFO     | 
[2025-06-06 13:50:13] 2025-06-06 13:49:52,256 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/1
[2025-06-06 13:50:13] 2025-06-06 13:49:52,299 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 13:50:13] 2025-06-06 13:49:52,299 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 13:50:13] 2025-06-06 13:49:52,299 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 13:50:13] 2025-06-06 13:49:52,299 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 13:50:13] 2025-06-06 13:49:52,299 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 13:50:13] 2025-06-06 13:49:52,299 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 13:50:13] 2025-06-06 13:49:52,299 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 13:50:13] 2025-06-06 13:49:52,300 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 13:50:13] 2025-06-06 13:49:52,300 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 13:50:13] 2025-06-06 13:49:52,300 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 13:50:13] 2025-06-06 13:49:52,300 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 13:50:13] 2025-06-06 13:49:52,300 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 13:50:13] 2025-06-06 13:49:52,300 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 13:50:13] 2025-06-06 13:49:52,300 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 13:50:13] 2025-06-06 13:49:52,300 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 13:50:13] 2025-06-06 13:49:52,300 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 13:50:13] 2025-06-06 13:49:52,300 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 13:50:13] 2025-06-06 13:49:52,301 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 13:50:13] 2025-06-06 13:49:52,301 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 13:50:13] 2025-06-06 13:49:52,301 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 13:50:13] 2025-06-06 13:49:52,301 | INFO     | job 6668442766 has completed (purged errors)
[2025-06-06 13:50:13] 2025-06-06 13:49:52,301 | INFO     | overall cleanup function is called
[2025-06-06 13:50:13] 2025-06-06 13:49:53,310 | INFO     | --- collectZombieJob: --- 10, [1584798]
[2025-06-06 13:50:13] 2025-06-06 13:49:53,311 | INFO     | zombie collector waiting for pid 1584798
[2025-06-06 13:50:13] 2025-06-06 13:49:53,311 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 13:50:13] 2025-06-06 13:49:53,311 | INFO     | collected zombie processes
[2025-06-06 13:50:13] 2025-06-06 13:49:53,311 | INFO     | will attempt to kill all subprocesses of pid=1584798
[2025-06-06 13:50:13] 2025-06-06 13:49:53,468 | INFO     | process IDs to be killed: [1584798] (in reverse order)
[2025-06-06 13:50:13] 2025-06-06 13:49:53,579 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 13:50:13] 2025-06-06 13:49:53,579 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 13:50:13] 2025-06-06 13:49:53,581 | INFO     | did not find any defunct processes belonging to 1584798
[2025-06-06 13:50:13] 2025-06-06 13:49:53,583 | INFO     | did not find any defunct processes belonging to 1584798
[2025-06-06 13:50:13] 2025-06-06 13:49:53,583 | INFO     | ready for new job
[2025-06-06 13:50:13] 2025-06-06 13:49:53,583 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 13:50:13] 2025-06-06 13:49:53,584 | INFO     | **************************************
[2025-06-06 13:50:13] 2025-06-06 13:49:53,584 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 13:50:13] 2025-06-06 13:49:53,584 | INFO     | **************************************
[2025-06-06 13:50:13] 2025-06-06 13:49:53,584 | INFO     | 
[2025-06-06 13:50:13] 2025-06-06 13:49:53,607 | INFO     | architecture information:
[2025-06-06 13:50:13] 2025-06-06 13:49:53,618 | INFO     | executing command: cat /etc/os-release
[2025-06-06 13:50:13] 2025-06-06 13:49:53,659 | INFO     | cat /etc/os-release:
[2025-06-06 13:50:13] NAME="CentOS Linux"
[2025-06-06 13:50:13] VERSION="7 (Core)"
[2025-06-06 13:50:13] ID="centos"
[2025-06-06 13:50:13] ID_LIKE="rhel fedora"
[2025-06-06 13:50:13] VERSION_ID="7"
[2025-06-06 13:50:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 13:50:13] ANSI_COLOR="0;31"
[2025-06-06 13:50:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 13:50:13] HOME_URL="https://www.centos.org/"
[2025-06-06 13:50:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 13:50:13] 
[2025-06-06 13:50:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 13:50:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 13:50:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 13:50:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 13:50:13] 
[2025-06-06 13:50:13] 2025-06-06 13:49:53,659 | INFO     | **************************************
[2025-06-06 13:50:13] 2025-06-06 13:49:54,163 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/1
[2025-06-06 13:50:13] 2025-06-06 13:49:54,175 | INFO     | sufficient remaining disk space (31701598208 B)
[2025-06-06 13:50:13] 2025-06-06 13:49:54,175 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 13:50:13] 2025-06-06 13:49:54,175 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 13:50:13] 2025-06-06 13:49:54,175 | INFO     | update_server=False
[2025-06-06 13:50:13] 2025-06-06 13:49:54,175 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 13:50:13] 2025-06-06 13:49:54,176 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 13:50:13] 2025-06-06 13:49:54,282 | INFO     | all payload control threads have been joined
[2025-06-06 13:50:13] 2025-06-06 13:49:54,551 | INFO     | PID=1578327 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-06 13:50:13] 2025-06-06 13:49:54,552 | INFO     | .. there are 2 such processes running
[2025-06-06 13:50:13] 2025-06-06 13:49:54,552 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 13:50:13] 2025-06-06 13:49:54,552 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 13:50:13] 2025-06-06 13:49:54,552 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 13:50:13] 2025-06-06 13:49:54,650 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 13:50:13] 2025-06-06 13:49:54,654 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 13:50:13] 2025-06-06 13:49:54,655 | INFO     | aborting loop
[2025-06-06 13:50:13] 2025-06-06 13:49:54,777 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 13:50:13] 2025-06-06 13:49:54,826 | INFO     | all data control threads have been joined
[2025-06-06 13:50:13] 2025-06-06 13:49:55,183 | INFO     | [job] retrieve thread has finished
[2025-06-06 13:50:13] 2025-06-06 13:49:55,183 | INFO     | [job] queue monitor thread has finished
[2025-06-06 13:50:13] 2025-06-06 13:49:55,299 | INFO     | [payload] control thread has finished
[2025-06-06 13:50:13] 2025-06-06 13:49:55,299 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 13:50:13] 2025-06-06 13:49:55,399 | INFO     | [payload] validate_post thread has finished
[2025-06-06 13:50:13] 2025-06-06 13:49:55,502 | INFO     | all job control threads have been joined
[2025-06-06 13:50:13] 2025-06-06 13:49:55,659 | INFO     | [job] job monitor thread has finished
[2025-06-06 13:50:13] 2025-06-06 13:49:55,807 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 13:50:13] 2025-06-06 13:49:55,834 | INFO     | [data] control thread has finished
[2025-06-06 13:50:13] 2025-06-06 13:49:56,051 | INFO     | [payload] failed_post thread has finished
[2025-06-06 13:50:13] 2025-06-06 13:49:56,238 | INFO     | [job] validate thread has finished
[2025-06-06 13:50:13] 2025-06-06 13:49:56,434 | INFO     | [data] copytool_in thread has finished
[2025-06-06 13:50:13] 2025-06-06 13:49:56,466 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 13:50:13] 2025-06-06 13:49:56,506 | INFO     | [job] control thread has finished
[2025-06-06 13:50:13] 2025-06-06 13:49:56,662 | INFO     | [data] copytool_out thread has finished
[2025-06-06 13:50:13] 2025-06-06 13:49:58,802 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 13:50:13] 2025-06-06 13:50:05,118 | INFO     | job.realtimelogging is not enabled
[2025-06-06 13:50:13] 2025-06-06 13:50:06,122 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 13:50:13] 2025-06-06 13:50:07,570 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139682431194944)>', '<ExcThread(monitor, started 139681840744192)>']
[2025-06-06 13:50:13] 2025-06-06 13:50:07,610 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 13:50:13] 2025-06-06 13:50:07,611 | INFO     | [monitor] control thread has ended
[2025-06-06 13:50:13] 2025-06-06 13:50:12,594 | INFO     | all workflow threads have been joined
[2025-06-06 13:50:13] 2025-06-06 13:50:12,595 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 13:50:13] 2025-06-06 13:50:12,595 | INFO     | traces error code: 0
[2025-06-06 13:50:13] 2025-06-06 13:50:12,595 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 13:50:13] 2025-06-06 13:50:12,927 [wrapper] ==== pilot stdout END ====
[2025-06-06 13:50:13] 2025-06-06 13:50:12,978 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 13:50:13] 2025-06-06 13:50:13,017 [wrapper] pilotpid: 1578327
[2025-06-06 13:50:13] 2025-06-06 13:50:13,047 [wrapper] Pilot exit status: 0
[2025-06-06 13:50:13] 2025-06-06 13:50:13,167 [wrapper] pandaids: 6668442766
[2025-06-06 13:50:13] 2025-06-06 13:50:13,247 [wrapper] cleanup supervisor_pilot 1644290 1578328
[2025-06-06 13:50:13] 2025-06-06 13:50:13,263 [wrapper] Test setup, not cleaning
[2025-06-06 13:50:13] 2025-06-06 13:50:13,283 [wrapper] apfmon messages muted
[2025-06-06 13:50:13] 2025-06-06 13:50:13,334 [wrapper] ==== wrapper stdout END ====
[2025-06-06 13:50:13] 2025-06-06 13:50:13,356 [wrapper] ==== wrapper stderr END ====
[2025-06-06 13:50:13]  *** Error codes and diagnostics ***
[2025-06-06 13:50:13]     "exeErrorCode": 0,
[2025-06-06 13:50:13]     "exeErrorDiag": "",
[2025-06-06 13:50:13]     "pilotErrorCode": 0,
[2025-06-06 13:50:13]     "pilotErrorDiag": "",
[2025-06-06 13:50:13]  *** Listing of results directory ***
[2025-06-06 13:50:13] total 414932
[2025-06-06 13:50:13] -rw-r--r-- 1 boinc boinc    495897 May 28 13:01 pilot3.tar.gz
[2025-06-06 13:50:13] -rwx------ 1 boinc boinc     37140 May 28 13:06 runpilot2-wrapper.sh
[2025-06-06 13:50:13] -rw-r--r-- 1 boinc boinc      5111 May 28 13:06 queuedata.json
[2025-06-06 13:50:13] -rw-rw-r-- 1 boinc boinc       100 Jun  6 09:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 13:50:13] -rwxr-xr-x 1 boinc boinc      7986 Jun  6 09:38 run_atlas
[2025-06-06 13:50:13] -rw-rw-r-- 1 boinc boinc       105 Jun  6 09:38 job.xml
[2025-06-06 13:50:13] -rw-r--r-- 2 boinc boinc     15093 Jun  6 09:38 start_atlas.sh
[2025-06-06 13:50:13] drwxrwx--x 2 boinc boinc      4096 Jun  6 09:38 shared
[2025-06-06 13:50:13] -rw-r--r-- 2 boinc boinc    508869 Jun  6 09:38 input.tar.gz
[2025-06-06 13:50:13] -rw-rw-r-- 1 boinc boinc      9357 Jun  6 09:38 init_data.xml
[2025-06-06 13:50:13] -rw-r--r-- 2 boinc boinc 223459654 Jun  6 09:38 EVNT.44871834._003304.pool.root.1
[2025-06-06 13:50:13] -rw-rw-r-- 1 boinc boinc         0 Jun  6 09:38 boinc_lockfile
[2025-06-06 13:50:13] -rw-rw-r-- 1 boinc boinc      2559 Jun  6 09:38 pandaJob.out
[2025-06-06 13:50:13] -rw------- 1 boinc boinc    987967 Jun  6 09:39 agis_schedconf.cvmfs.json
[2025-06-06 13:50:13] drwx------ 4 boinc boinc      4096 Jun  6 09:39 pilot3
[2025-06-06 13:50:13] -rw------- 1 boinc boinc 193857405 Jun  6 13:47 HITS.44871837._084688.pool.root.1
[2025-06-06 13:50:13] -rw-rw-r-- 1 boinc boinc       530 Jun  6 13:47 boinc_task_state.xml
[2025-06-06 13:50:13] -rw------- 1 boinc boinc      1020 Jun  6 13:48 memory_monitor_summary.json
[2025-06-06 13:50:13] -rw------- 1 boinc boinc   1598969 Jun  6 13:48 agis_ddmendpoints.agis.ALL.json
[2025-06-06 13:50:13] -rw------- 1 boinc boinc    466689 Jun  6 13:48 log.44871837._084688.job.log.tgz.1
[2025-06-06 13:50:13] -rw------- 1 boinc boinc        95 Jun  6 13:49 pilot_heartbeat.json
[2025-06-06 13:50:13] -rw------- 1 boinc boinc      7665 Jun  6 13:49 heartbeat.json
[2025-06-06 13:50:13] -rw-rw-r-- 1 boinc boinc      8192 Jun  6 13:50 boinc_mmap_file
[2025-06-06 13:50:13] -rw-rw-r-- 1 boinc boinc        28 Jun  6 13:50 wrapper_checkpoint.txt
[2025-06-06 13:50:13] -rw------- 1 boinc boinc      4842 Jun  6 13:50 pilotlog.txt
[2025-06-06 13:50:13] -rw------- 1 boinc boinc   1403582 Jun  6 13:50 log.44871837._084688.job.log.1
[2025-06-06 13:50:13] -rw------- 1 boinc boinc       357 Jun  6 13:50 output.list
[2025-06-06 13:50:13] -rw-rw-r-- 1 boinc boinc       620 Jun  6 13:50 runtime_log
[2025-06-06 13:50:13] -rw------- 1 boinc boinc   1884160 Jun  6 13:50 result.tar.gz
[2025-06-06 13:50:13] -rw-rw-r-- 1 boinc boinc      8949 Jun  6 13:50 runtime_log.err
[2025-06-06 13:50:13] -rw------- 1 boinc boinc       652 Jun  6 13:50 QeLLDm5eVe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm4BcKDmgmnUcn.diag
[2025-06-06 13:50:13] -rw-rw-r-- 1 boinc boinc     21336 Jun  6 13:50 stderr.txt
[2025-06-06 13:50:14] HITS file was successfully produced:
[2025-06-06 13:50:14] -rw------- 1 boinc boinc 193857405 Jun  6 13:47 shared/HITS.pool.root.1
[2025-06-06 13:50:14]  *** Contents of shared directory: ***
[2025-06-06 13:50:14] total 409904
[2025-06-06 13:50:14] -rw-r--r-- 2 boinc boinc     15093 Jun  6 09:38 start_atlas.sh
[2025-06-06 13:50:14] -rw-r--r-- 2 boinc boinc    508869 Jun  6 09:38 input.tar.gz
[2025-06-06 13:50:14] -rw-r--r-- 2 boinc boinc 223459654 Jun  6 09:38 ATLAS.root_0
[2025-06-06 13:50:14] -rw------- 1 boinc boinc 193857405 Jun  6 13:47 HITS.pool.root.1
[2025-06-06 13:50:14] -rw------- 1 boinc boinc   1884160 Jun  6 13:50 result.tar.gz
13:50:15 (1574720): run_atlas exited; CPU time 53447.787372
13:50:15 (1574720): called boinc_finish(0)

</stderr_txt>
]]>

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