Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:51:46 (25831): wrapper (7.7.26015): starting
00:51:46 (25831): wrapper: running run_atlas (--nthreads 8)
[2025-06-06 00:51:46] Arguments: --nthreads 8
[2025-06-06 00:51:46] Threads: 8
[2025-06-06 00:51:46] Checking for CVMFS
[2025-06-06 00:51:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 00:51:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 00:51:47] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 00:51:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 00:51:48] 2.11.2.0 30615 35249 93136 146835 3 16 15893497 25165824 4674 130560 0 18419971 99.845 19079679 2646 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-06 00:51:48] CVMFS is ok
[2025-06-06 00:51:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 00:51:48] Checking for apptainer binary...
[2025-06-06 00:51:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 00:51:48] Running /usr/bin/apptainer --version
[2025-06-06 00:51:48] apptainer version 1.3.2-1.el7
[2025-06-06 00:51:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 01:22:19] cg-vwn418.simple-grid.lan
[2025-06-06 01:22:19] apptainer works
[2025-06-06 01:22:19] Set ATHENA_PROC_NUMBER=8
[2025-06-06 01:22:19] Set ATHENA_CORE_NUMBER=8
[2025-06-06 01:22:19] Starting ATLAS job with PandaID=6668688769
[2025-06-06 01:22:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 07:08:29]  *** The last 200 lines of the pilot log: ***
[2025-06-06 07:08:29] 2025-06-06 05:02:10,790 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 07:08:29] 2025-06-06 05:02:10,790 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 07:08:29] 2025-06-06 05:02:10,790 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 07:08:29] 2025-06-06 05:02:10,790 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 07:08:29] 2025-06-06 05:02:10,797 | INFO     | fitting pss+swap vs Time
[2025-06-06 07:08:29] 2025-06-06 05:02:10,798 | INFO     | sum of square deviations: 10352419220.5
[2025-06-06 07:08:29] 2025-06-06 05:02:10,801 | INFO     | sum of deviations: 110785008968.0
[2025-06-06 07:08:29] 2025-06-06 05:02:10,802 | INFO     | mean x: 1749176252.5
[2025-06-06 07:08:29] 2025-06-06 05:02:10,802 | INFO     | mean y: 2464070.186335404
[2025-06-06 07:08:29] 2025-06-06 05:02:10,802 | INFO     | -- intersect: -18716108148.768475
[2025-06-06 07:08:29] 2025-06-06 05:02:10,802 | INFO     | intersect: -18716108148.768475
[2025-06-06 07:08:29] 2025-06-06 05:02:10,803 | INFO     | chi2: 7.413122025564611
[2025-06-06 07:08:29] 2025-06-06 05:02:10,803 | INFO     | sum of square deviations: 9877610318.0
[2025-06-06 07:08:29] 2025-06-06 05:02:10,807 | INFO     | sum of deviations: 130408794307.0
[2025-06-06 07:08:29] 2025-06-06 05:02:10,807 | INFO     | mean x: 1749176100.0
[2025-06-06 07:08:29] 2025-06-06 05:02:10,807 | INFO     | mean y: 2470286.596214511
[2025-06-06 07:08:29] 2025-06-06 05:02:10,807 | INFO     | -- intersect: -23090964146.217827
[2025-06-06 07:08:29] 2025-06-06 05:02:10,807 | INFO     | intersect: -23090964146.217827
[2025-06-06 07:08:29] 2025-06-06 05:02:10,808 | INFO     | chi2: 6.693731692179433
[2025-06-06 07:08:29] 2025-06-06 05:02:10,808 | INFO     | current chi2=6.693731692179433 (change=9.704282904076255 %)
[2025-06-06 07:08:29] 2025-06-06 05:02:10,808 | INFO     | right removable region: 316
[2025-06-06 07:08:29] 2025-06-06 05:02:10,809 | INFO     | sum of square deviations: 9877610318.0
[2025-06-06 07:08:29] 2025-06-06 05:02:10,812 | INFO     | sum of deviations: -2589088575.0
[2025-06-06 07:08:29] 2025-06-06 05:02:10,812 | INFO     | mean x: 1749176405.0
[2025-06-06 07:08:29] 2025-06-06 05:02:10,812 | INFO     | mean y: 2500463.9873817037
[2025-06-06 07:08:29] 2025-06-06 05:02:10,813 | INFO     | -- intersect: 460989157.10704005
[2025-06-06 07:08:29] 2025-06-06 05:02:10,813 | INFO     | intersect: 460989157.10704005
[2025-06-06 07:08:29] 2025-06-06 05:02:10,813 | INFO     | chi2: 2.591848249229873
[2025-06-06 07:08:29] 2025-06-06 05:02:10,813 | INFO     | current chi2=2.591848249229873 (change=65.0370216449733 %)
[2025-06-06 07:08:29] 2025-06-06 05:02:10,814 | INFO     | sum of square deviations: 9417545878.0
[2025-06-06 07:08:29] 2025-06-06 05:02:10,817 | INFO     | sum of deviations: -64116634265.00001
[2025-06-06 07:08:29] 2025-06-06 05:02:10,817 | INFO     | mean x: 1749176557.5
[2025-06-06 07:08:29] 2025-06-06 05:02:10,817 | INFO     | mean y: 2520786.576923077
[2025-06-06 07:08:29] 2025-06-06 05:02:10,817 | INFO     | -- intersect: 11911282905.18067
[2025-06-06 07:08:29] 2025-06-06 05:02:10,817 | INFO     | intersect: 11911282905.18067
[2025-06-06 07:08:29] 2025-06-06 05:02:10,818 | INFO     | chi2: 1.0108934309174755
[2025-06-06 07:08:29] 2025-06-06 05:02:10,818 | INFO     | current chi2=1.0108934309174755 (change=60.9971983808139 %)
[2025-06-06 07:08:29] 2025-06-06 05:02:10,818 | INFO     | sum of square deviations: 8971993338.0
[2025-06-06 07:08:29] 2025-06-06 05:02:10,821 | INFO     | sum of deviations: -66375733031.0
[2025-06-06 07:08:29] 2025-06-06 05:02:10,822 | INFO     | mean x: 1749176710.0
[2025-06-06 07:08:29] 2025-06-06 05:02:10,822 | INFO     | mean y: 2521535.57980456
[2025-06-06 07:08:29] 2025-06-06 05:02:10,822 | INFO     | -- intersect: 12943111430.498753
[2025-06-06 07:08:29] 2025-06-06 05:02:10,822 | INFO     | intersect: 12943111430.498753
[2025-06-06 07:08:29] 2025-06-06 05:02:10,822 | INFO     | chi2: 0.9813743315081471
[2025-06-06 07:08:29] 2025-06-06 05:02:10,823 | INFO     | current chi2=0.9813743315081471 (change=2.9201000329517615 %)
[2025-06-06 07:08:29] 2025-06-06 05:02:10,823 | INFO     | left removable region: 30
[2025-06-06 07:08:29] 2025-06-06 05:02:10,823 | INFO     | sum of square deviations: 7253894147.5
[2025-06-06 07:08:29] 2025-06-06 05:02:10,826 | INFO     | sum of deviations: -14940759707.0
[2025-06-06 07:08:29] 2025-06-06 05:02:10,826 | INFO     | mean x: 1749176984.5
[2025-06-06 07:08:29] 2025-06-06 05:02:10,826 | INFO     | mean y: 2517660.4755244753
[2025-06-06 07:08:29] 2025-06-06 05:02:10,826 | INFO     | -- intersect: 3605276741.187539
[2025-06-06 07:08:29] 2025-06-06 05:02:10,826 | INFO     | intersect: 3605276741.187539
[2025-06-06 07:08:29] 2025-06-06 05:02:10,827 | INFO     | chi2: 0.1180342814831729
[2025-06-06 07:08:29] 2025-06-06 05:02:10,827 | INFO     | -- intersect: 3605276741.187539
[2025-06-06 07:08:29] 2025-06-06 05:02:10,827 | INFO     | current memory leak: -2.06 B/s (using 286 data points, chi2=0.12)
[2025-06-06 07:08:29] 2025-06-06 05:02:10,828 | INFO     | ..............................
[2025-06-06 07:08:29] 2025-06-06 05:02:10,829 | INFO     | . Timing measurements:
[2025-06-06 07:08:29] 2025-06-06 05:02:10,829 | INFO     | . get job = 0 s
[2025-06-06 07:08:29] 2025-06-06 05:02:10,829 | INFO     | . initial setup = 5 s
[2025-06-06 07:08:29] 2025-06-06 05:02:10,829 | INFO     | . payload setup = 185 s
[2025-06-06 07:08:29] 2025-06-06 05:02:10,829 | INFO     | . stage-in = 0 s
[2025-06-06 07:08:29] 2025-06-06 05:02:10,829 | INFO     | . payload execution = 19750 s
[2025-06-06 07:08:29] 2025-06-06 05:02:10,829 | INFO     | . stage-out = 1 s
[2025-06-06 07:08:29] 2025-06-06 05:02:10,829 | INFO     | . log creation = 0 s
[2025-06-06 07:08:29] 2025-06-06 05:02:10,829 | INFO     | ..............................
[2025-06-06 07:08:29] 2025-06-06 05:02:10,952 | INFO     | 
[2025-06-06 07:08:29] 2025-06-06 05:02:10,952 | INFO     | job summary report
[2025-06-06 07:08:29] 2025-06-06 05:02:10,953 | INFO     | --------------------------------------------------
[2025-06-06 07:08:29] 2025-06-06 05:02:10,953 | INFO     | PanDA job id: 6668688769
[2025-06-06 07:08:29] 2025-06-06 05:02:10,953 | INFO     | task id: 44871837
[2025-06-06 07:08:29] 2025-06-06 05:02:10,953 | INFO     | errors: (none)
[2025-06-06 07:08:29] 2025-06-06 05:02:10,953 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 07:08:29] 2025-06-06 05:02:10,953 | INFO     | pilot state: finished 
[2025-06-06 07:08:29] 2025-06-06 05:02:10,953 | INFO     | transexitcode: 0
[2025-06-06 07:08:29] 2025-06-06 05:02:10,953 | INFO     | exeerrorcode: 0
[2025-06-06 07:08:29] 2025-06-06 05:02:10,953 | INFO     | exeerrordiag: 
[2025-06-06 07:08:29] 2025-06-06 05:02:10,953 | INFO     | exitcode: 0
[2025-06-06 07:08:29] 2025-06-06 05:02:10,953 | INFO     | exitmsg: OK
[2025-06-06 07:08:29] 2025-06-06 05:02:10,954 | INFO     | cpuconsumptiontime: 73982 s
[2025-06-06 07:08:29] 2025-06-06 05:02:10,954 | INFO     | nevents: 400
[2025-06-06 07:08:29] 2025-06-06 05:02:10,954 | INFO     | neventsw: 0
[2025-06-06 07:08:29] 2025-06-06 05:02:10,954 | INFO     | pid: 22710
[2025-06-06 07:08:29] 2025-06-06 05:02:10,954 | INFO     | pgrp: 22710
[2025-06-06 07:08:29] 2025-06-06 05:02:10,954 | INFO     | corecount: 8
[2025-06-06 07:08:29] 2025-06-06 05:02:10,954 | INFO     | event service: False
[2025-06-06 07:08:29] 2025-06-06 05:02:10,954 | INFO     | sizes: {0: 2397164, 1: 2397248, 2: 2397447, 13: 2397447, 23: 2397503, 34: 2397531, 45: 2397687, 55: 2397715, 66: 2397743, 77: 2397771, 88: 2397827, 92: 2398341, 99
[2025-06-06 07:08:29] 2025-06-06 05:02:10,954 | INFO     | --------------------------------------------------
[2025-06-06 07:08:29] 2025-06-06 05:02:10,954 | INFO     | 
[2025-06-06 07:08:29] 2025-06-06 05:02:10,955 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-06-06 07:08:29] 2025-06-06 05:02:11,000 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 07:08:29] 2025-06-06 05:02:11,001 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 07:08:29] 2025-06-06 05:02:11,001 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 07:08:29] 2025-06-06 05:02:11,001 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 07:08:29] 2025-06-06 05:02:11,001 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 07:08:29] 2025-06-06 05:02:11,001 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 07:08:29] 2025-06-06 05:02:11,001 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 07:08:29] 2025-06-06 05:02:11,001 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 07:08:29] 2025-06-06 05:02:11,001 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 07:08:29] 2025-06-06 05:02:11,002 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 07:08:29] 2025-06-06 05:02:11,002 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 07:08:29] 2025-06-06 05:02:11,002 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 07:08:29] 2025-06-06 05:02:11,002 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 07:08:29] 2025-06-06 05:02:11,002 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 07:08:29] 2025-06-06 05:02:11,002 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 07:08:29] 2025-06-06 05:02:11,002 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 07:08:29] 2025-06-06 05:02:11,002 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 07:08:29] 2025-06-06 05:02:11,002 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 07:08:29] 2025-06-06 05:02:11,002 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 07:08:29] 2025-06-06 05:02:11,002 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 07:08:29] 2025-06-06 05:02:11,003 | INFO     | job 6668688769 has completed (purged errors)
[2025-06-06 07:08:29] 2025-06-06 05:02:11,003 | INFO     | overall cleanup function is called
[2025-06-06 07:08:29] 2025-06-06 05:02:12,012 | INFO     | --- collectZombieJob: --- 10, [22710]
[2025-06-06 07:08:29] 2025-06-06 05:02:12,013 | INFO     | zombie collector waiting for pid 22710
[2025-06-06 07:08:29] 2025-06-06 05:02:12,013 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 07:08:29] 2025-06-06 05:02:12,013 | INFO     | collected zombie processes
[2025-06-06 07:08:29] 2025-06-06 05:02:12,013 | INFO     | will attempt to kill all subprocesses of pid=22710
[2025-06-06 07:08:29] 2025-06-06 05:02:12,140 | INFO     | process IDs to be killed: [22710] (in reverse order)
[2025-06-06 07:08:29] 2025-06-06 05:02:12,463 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 07:08:29] 2025-06-06 05:02:12,463 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 07:08:29] 2025-06-06 05:02:12,467 | INFO     | did not find any defunct processes belonging to 22710
[2025-06-06 07:08:29] 2025-06-06 05:02:12,470 | INFO     | did not find any defunct processes belonging to 22710
[2025-06-06 07:08:29] 2025-06-06 05:02:12,471 | INFO     | ready for new job
[2025-06-06 07:08:29] 2025-06-06 05:02:12,471 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 07:08:29] 2025-06-06 05:02:12,473 | INFO     | **************************************
[2025-06-06 07:08:29] 2025-06-06 05:02:12,474 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 07:08:29] 2025-06-06 05:02:12,474 | INFO     | **************************************
[2025-06-06 07:08:29] 2025-06-06 05:02:12,474 | INFO     | 
[2025-06-06 07:08:29] 2025-06-06 05:02:12,474 | INFO     | pilot is running in a VM
[2025-06-06 07:08:29] 2025-06-06 05:02:12,474 | INFO     | architecture information:
[2025-06-06 07:08:29] 2025-06-06 05:02:12,476 | INFO     | executing command: cat /etc/os-release
[2025-06-06 07:08:29] 2025-06-06 05:02:12,500 | INFO     | cat /etc/os-release:
[2025-06-06 07:08:29] NAME="CentOS Linux"
[2025-06-06 07:08:29] VERSION="7 (Core)"
[2025-06-06 07:08:29] ID="centos"
[2025-06-06 07:08:29] ID_LIKE="rhel fedora"
[2025-06-06 07:08:29] VERSION_ID="7"
[2025-06-06 07:08:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 07:08:29] ANSI_COLOR="0;31"
[2025-06-06 07:08:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 07:08:29] HOME_URL="https://www.centos.org/"
[2025-06-06 07:08:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 07:08:29] 
[2025-06-06 07:08:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 07:08:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 07:08:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 07:08:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 07:08:29] 
[2025-06-06 07:08:29] 2025-06-06 05:02:12,500 | INFO     | **************************************
[2025-06-06 07:08:29] 2025-06-06 05:02:13,003 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-06-06 07:08:29] 2025-06-06 05:02:13,213 | INFO     | sufficient remaining disk space (494152974336 B)
[2025-06-06 07:08:29] 2025-06-06 05:02:13,213 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 07:08:29] 2025-06-06 05:02:13,214 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 07:08:29] 2025-06-06 05:02:13,214 | INFO     | update_server=False
[2025-06-06 07:08:29] 2025-06-06 05:02:13,214 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 07:08:29] 2025-06-06 05:02:13,214 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 07:08:29] 2025-06-06 05:02:13,215 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-06 07:08:29] 2025-06-06 05:02:13,216 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 07:08:29] 2025-06-06 05:02:13,216 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 07:08:29] 2025-06-06 05:02:13,216 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 07:08:29] 2025-06-06 05:02:13,298 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 07:08:29] 2025-06-06 05:02:13,299 | INFO     | aborting loop
[2025-06-06 07:08:29] 2025-06-06 05:02:13,641 | INFO     | all data control threads have been joined
[2025-06-06 07:08:29] 2025-06-06 05:02:14,025 | INFO     | all job control threads have been joined
[2025-06-06 07:08:29] 2025-06-06 05:02:14,163 | INFO     | all payload control threads have been joined
[2025-06-06 07:08:29] 2025-06-06 05:02:14,220 | INFO     | [job] retrieve thread has finished
[2025-06-06 07:08:29] 2025-06-06 05:02:14,304 | INFO     | [job] job monitor thread has finished
[2025-06-06 07:08:29] 2025-06-06 05:02:14,362 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 07:08:29] 2025-06-06 05:02:14,547 | INFO     | [job] validate thread has finished
[2025-06-06 07:08:29] 2025-06-06 05:02:14,640 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 07:08:29] 2025-06-06 05:02:14,647 | INFO     | [data] control thread has finished
[2025-06-06 07:08:29] 2025-06-06 05:02:14,759 | INFO     | [payload] failed_post thread has finished
[2025-06-06 07:08:29] 2025-06-06 05:02:15,031 | INFO     | [job] control thread has finished
[2025-06-06 07:08:29] 2025-06-06 05:02:15,112 | INFO     | [payload] validate_post thread has finished
[2025-06-06 07:08:29] 2025-06-06 05:02:15,169 | INFO     | [payload] control thread has finished
[2025-06-06 07:08:29] 2025-06-06 05:02:15,305 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 07:08:29] 2025-06-06 05:02:15,521 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 07:08:29] 2025-06-06 05:02:15,537 | INFO     | [data] copytool_in thread has finished
[2025-06-06 07:08:29] 2025-06-06 05:02:15,966 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 07:08:29] 2025-06-06 05:02:16,369 | INFO     | [data] copytool_out thread has finished
[2025-06-06 07:08:29] 2025-06-06 05:02:16,972 | INFO     | [job] queue monitor thread has finished
[2025-06-06 07:08:29] 2025-06-06 05:02:17,224 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 07:08:29] 2025-06-06 05:02:23,414 | INFO     | job.realtimelogging is not enabled
[2025-06-06 07:08:29] 2025-06-06 05:02:24,420 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 07:08:29] 2025-06-06 05:02:25,885 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140636418750272)>', '<ExcThread(monitor, started 140636112004864)>']
[2025-06-06 07:08:29] 2025-06-06 05:02:26,291 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 07:08:29] 2025-06-06 05:02:26,291 | INFO     | [monitor] control thread has ended
[2025-06-06 07:08:29] 2025-06-06 05:02:30,911 | INFO     | all workflow threads have been joined
[2025-06-06 07:08:29] 2025-06-06 05:02:30,912 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 07:08:29] 2025-06-06 05:02:30,912 | INFO     | traces error code: 0
[2025-06-06 07:08:29] 2025-06-06 05:02:30,912 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 07:08:29] 2025-06-06 05:02:31,194 [wrapper] ==== pilot stdout END ====
[2025-06-06 07:08:29] 2025-06-06 05:02:31,198 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 07:08:29] 2025-06-06 05:02:31,204 [wrapper] pilotpid: 14144
[2025-06-06 07:08:29] 2025-06-06 05:02:31,209 [wrapper] Pilot exit status: 0
[2025-06-06 07:08:29] 2025-06-06 05:02:31,674 [wrapper] pandaids: 6668688769
[2025-06-06 07:08:29] 2025-06-06 05:02:32,100 [wrapper] cleanup supervisor_pilot 19339 14145
[2025-06-06 07:08:29] 2025-06-06 05:02:32,121 [wrapper] Test setup, not cleaning
[2025-06-06 07:08:29] 2025-06-06 05:02:32,187 [wrapper] apfmon messages muted
[2025-06-06 07:08:29] 2025-06-06 05:02:32,200 [wrapper] ==== wrapper stdout END ====
[2025-06-06 07:08:29] 2025-06-06 05:02:32,258 [wrapper] ==== wrapper stderr END ====
[2025-06-06 07:08:29]  *** Error codes and diagnostics ***
[2025-06-06 07:08:29]     "exeErrorCode": 0,
[2025-06-06 07:08:29]     "exeErrorDiag": "",
[2025-06-06 07:08:29]     "pilotErrorCode": 0,
[2025-06-06 07:08:29]     "pilotErrorDiag": "",
[2025-06-06 07:08:29]  *** Listing of results directory ***
[2025-06-06 07:08:29] total 425832
[2025-06-06 07:08:29] -rw-r--r--. 1 boinc boinc    495897 May 28 18:21 pilot3.tar.gz
[2025-06-06 07:08:29] -rwx------. 1 boinc boinc     37140 May 28 18:35 runpilot2-wrapper.sh
[2025-06-06 07:08:29] -rw-r--r--. 1 boinc boinc      5111 May 28 18:35 queuedata.json
[2025-06-06 07:08:29] -rw-r--r--. 1 boinc boinc       100 Jun  6 00:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 07:08:29] -rwxr-xr-x. 1 boinc boinc      7986 Jun  6 00:51 run_atlas
[2025-06-06 07:08:29] -rw-r--r--. 1 boinc boinc       105 Jun  6 00:51 job.xml
[2025-06-06 07:08:29] -rw-r--r--. 2 boinc boinc 225636703 Jun  6 00:51 EVNT.44871834._003391.pool.root.1
[2025-06-06 07:08:29] -rw-r--r--. 1 boinc boinc      6392 Jun  6 00:51 init_data.xml
[2025-06-06 07:08:29] -rw-r--r--. 2 boinc boinc     15093 Jun  6 00:51 start_atlas.sh
[2025-06-06 07:08:29] drwxrwx--x. 2 boinc boinc        68 Jun  6 00:51 shared
[2025-06-06 07:08:29] -rw-r--r--. 2 boinc boinc    508871 Jun  6 00:51 input.tar.gz
[2025-06-06 07:08:29] -rw-r--r--. 1 boinc boinc         0 Jun  6 00:51 boinc_lockfile
[2025-06-06 07:08:29] -rw-r--r--. 1 boinc boinc      2558 Jun  6 01:22 pandaJob.out
[2025-06-06 07:08:29] -rw-------. 1 boinc boinc    987721 Jun  6 01:25 agis_schedconf.cvmfs.json
[2025-06-06 07:08:29] drwx------. 4 boinc boinc      4096 Jun  6 01:25 pilot3
[2025-06-06 07:08:29] -rw-------. 1 boinc boinc 202285375 Jun  6 07:00 HITS.44871837._087068.pool.root.1
[2025-06-06 07:08:29] -rw-r--r--. 1 boinc boinc       531 Jun  6 07:00 boinc_task_state.xml
[2025-06-06 07:08:29] -rw-------. 1 boinc boinc      1016 Jun  6 07:00 memory_monitor_summary.json
[2025-06-06 07:08:29] -rw-------. 1 boinc boinc   1598969 Jun  6 07:01 agis_ddmendpoints.agis.ALL.json
[2025-06-06 07:08:29] -rw-------. 1 boinc boinc    443282 Jun  6 07:01 log.44871837._087068.job.log.tgz.1
[2025-06-06 07:08:29] -rw-------. 1 boinc boinc        95 Jun  6 07:01 pilot_heartbeat.json
[2025-06-06 07:08:29] -rw-------. 1 boinc boinc      7690 Jun  6 07:02 heartbeat.json
[2025-06-06 07:08:29] -rw-------. 1 boinc boinc      4611 Jun  6 07:02 pilotlog.txt
[2025-06-06 07:08:29] -rw-------. 1 boinc boinc   1707057 Jun  6 07:02 log.44871837._087068.job.log.1
[2025-06-06 07:08:29] -rw-------. 1 boinc boinc       357 Jun  6 07:02 output.list
[2025-06-06 07:08:29] -rw-r--r--. 1 boinc boinc       620 Jun  6 07:02 runtime_log
[2025-06-06 07:08:29] -rw-------. 1 boinc boinc   2170880 Jun  6 07:02 result.tar.gz
[2025-06-06 07:08:29] -rw-r--r--. 1 boinc boinc      8659 Jun  6 07:02 runtime_log.err
[2025-06-06 07:08:29] -rw-------. 1 boinc boinc       658 Jun  6 07:02 HZZKDmTvYe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmMbcKDmFR5e8m.diag
[2025-06-06 07:08:29] -rw-r--r--. 1 boinc boinc      8192 Jun  6 07:08 boinc_mmap_file
[2025-06-06 07:08:29] -rw-r--r--. 1 boinc boinc        28 Jun  6 07:08 wrapper_checkpoint.txt
[2025-06-06 07:08:29] -rw-r--r--. 1 boinc boinc     20491 Jun  6 07:08 stderr.txt
[2025-06-06 07:08:29] HITS file was successfully produced:
[2025-06-06 07:08:29] -rw-------. 1 boinc boinc 202285375 Jun  6 07:00 shared/HITS.pool.root.1
[2025-06-06 07:08:29]  *** Contents of shared directory: ***
[2025-06-06 07:08:29] total 420536
[2025-06-06 07:08:29] -rw-r--r--. 2 boinc boinc 225636703 Jun  6 00:51 ATLAS.root_0
[2025-06-06 07:08:29] -rw-r--r--. 2 boinc boinc     15093 Jun  6 00:51 start_atlas.sh
[2025-06-06 07:08:29] -rw-r--r--. 2 boinc boinc    508871 Jun  6 00:51 input.tar.gz
[2025-06-06 07:08:29] -rw-------. 1 boinc boinc 202285375 Jun  6 07:00 HITS.pool.root.1
[2025-06-06 07:08:29] -rw-------. 1 boinc boinc   2170880 Jun  6 07:02 result.tar.gz
07:08:31 (25831): run_atlas exited; CPU time 74242.669742
07:08:31 (25831): called boinc_finish(0)

</stderr_txt>
]]>

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