Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:01:43 (3542395): wrapper (7.7.26015): starting
16:01:43 (3542395): wrapper: running run_atlas (--nthreads 12)
[2025-06-05 16:01:43] Arguments: --nthreads 12
[2025-06-05 16:01:43] Threads: 12
[2025-06-05 16:01:43] Checking for CVMFS
[2025-06-05 16:01:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 16:01:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 16:01:43] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 16:01:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 16:01:44] 2.12.6.0 4996 2644 120388 146830 3 544 31800313 32935936 10600 16776704 0 5213438 99.750 4076716 32559 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-05 16:01:44] CVMFS is ok
[2025-06-05 16:01:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 16:01:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 16:01:44] Further information can be found at the LHC@home message board.
[2025-06-05 16:01:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 16:01:44] Checking for apptainer binary...
[2025-06-05 16:01:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 16:01:44] Running /usr/bin/apptainer --version
[2025-06-05 16:01:44] apptainer version 1.4.1-1.el9
[2025-06-05 16:01:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 16:01:44] c6-5-7-3.aglt2.org
[2025-06-05 16:01:44] apptainer works
[2025-06-05 16:01:44] Set ATHENA_PROC_NUMBER=12
[2025-06-05 16:01:44] Set ATHENA_CORE_NUMBER=12
[2025-06-05 16:01:44] Starting ATLAS job with PandaID=6668327150
[2025-06-05 16:01:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 18:49:04]  *** The last 200 lines of the pilot log: ***
[2025-06-05 18:49:04] 2025-06-05 22:48:48,502 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6668327150/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 18:49:04] 2025-06-05 22:48:48,503 | INFO     | extracted standard info from prmon json
[2025-06-05 18:49:04] 2025-06-05 22:48:48,503 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 18:49:04] 2025-06-05 22:48:48,503 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 18:49:04] 2025-06-05 22:48:48,503 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 18:49:04] 2025-06-05 22:48:48,504 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 18:49:04] 2025-06-05 22:48:48,506 | INFO     | fitting pss+swap vs Time
[2025-06-05 18:49:04] 2025-06-05 22:48:48,507 | INFO     | sum of square deviations: 1367727154.3109758
[2025-06-05 18:49:04] 2025-06-05 22:48:48,508 | INFO     | sum of deviations: -8046847042.121949
[2025-06-05 18:49:04] 2025-06-05 22:48:48,508 | INFO     | mean x: 1749158713.871951
[2025-06-05 18:49:04] 2025-06-05 22:48:48,508 | INFO     | mean y: 2374099.7560975607
[2025-06-05 18:49:04] 2025-06-05 22:48:48,508 | INFO     | -- intersect: 10293324731.655378
[2025-06-05 18:49:04] 2025-06-05 22:48:48,508 | INFO     | intersect: 10293324731.655378
[2025-06-05 18:49:04] 2025-06-05 22:48:48,508 | INFO     | chi2: 2.2587506358314524
[2025-06-05 18:49:04] 2025-06-05 22:48:48,508 | INFO     | sum of square deviations: 1246422553.5974872
[2025-06-05 18:49:04] 2025-06-05 22:48:48,509 | INFO     | sum of deviations: 4250907089.232716
[2025-06-05 18:49:04] 2025-06-05 22:48:48,509 | INFO     | mean x: 1749158561.3836477
[2025-06-05 18:49:04] 2025-06-05 22:48:48,509 | INFO     | mean y: 2389270.0125786164
[2025-06-05 18:49:04] 2025-06-05 22:48:48,509 | INFO     | -- intersect: -5963092104.916898
[2025-06-05 18:49:04] 2025-06-05 22:48:48,509 | INFO     | intersect: -5963092104.916898
[2025-06-05 18:49:04] 2025-06-05 22:48:48,510 | INFO     | chi2: 1.5747190415420358
[2025-06-05 18:49:04] 2025-06-05 22:48:48,510 | INFO     | current chi2=1.5747190415420358 (change=30.28362597616371 %)
[2025-06-05 18:49:04] 2025-06-05 22:48:48,510 | INFO     | sum of square deviations: 1132474765.4025917
[2025-06-05 18:49:04] 2025-06-05 22:48:48,511 | INFO     | sum of deviations: 5471330917.545453
[2025-06-05 18:49:04] 2025-06-05 22:48:48,511 | INFO     | mean x: 1749158408.8701298
[2025-06-05 18:49:04] 2025-06-05 22:48:48,511 | INFO     | mean y: 2390909.227272727
[2025-06-05 18:49:04] 2025-06-05 22:48:48,511 | INFO     | -- intersect: -8448326735.446747
[2025-06-05 18:49:04] 2025-06-05 22:48:48,511 | INFO     | intersect: -8448326735.446747
[2025-06-05 18:49:04] 2025-06-05 22:48:48,511 | INFO     | chi2: 1.575218452919036
[2025-06-05 18:49:04] 2025-06-05 22:48:48,511 | INFO     | current chi2=1.575218452919036 (change=-0.03171431625740827 %)
[2025-06-05 18:49:04] 2025-06-05 22:48:48,511 | INFO     | right removable region: 153
[2025-06-05 18:49:04] 2025-06-05 22:48:48,511 | INFO     | sum of square deviations: 1246385343.5974872
[2025-06-05 18:49:04] 2025-06-05 22:48:48,512 | INFO     | sum of deviations: -31316247950.70439
[2025-06-05 18:49:04] 2025-06-05 22:48:48,512 | INFO     | mean x: 1749158866.3836477
[2025-06-05 18:49:04] 2025-06-05 22:48:48,512 | INFO     | mean y: 2402972.4213836477
[2025-06-05 18:49:04] 2025-06-05 22:48:48,512 | INFO     | -- intersect: 43951164923.31068
[2025-06-05 18:49:04] 2025-06-05 22:48:48,512 | INFO     | intersect: 43951164923.31068
[2025-06-05 18:49:04] 2025-06-05 22:48:48,513 | INFO     | chi2: 0.8625236257900928
[2025-06-05 18:49:04] 2025-06-05 22:48:48,513 | INFO     | current chi2=0.8625236257900928 (change=61.814128035758344 %)
[2025-06-05 18:49:04] 2025-06-05 22:48:48,513 | INFO     | sum of square deviations: 1132458295.896101
[2025-06-05 18:49:04] 2025-06-05 22:48:48,514 | INFO     | sum of deviations: -23818975631.36364
[2025-06-05 18:49:04] 2025-06-05 22:48:48,514 | INFO     | mean x: 1749159018.883117
[2025-06-05 18:49:04] 2025-06-05 22:48:48,514 | INFO     | mean y: 2392925.590909091
[2025-06-05 18:49:04] 2025-06-05 22:48:48,514 | INFO     | -- intersect: 36792424132.16114
[2025-06-05 18:49:04] 2025-06-05 22:48:48,514 | INFO     | intersect: 36792424132.16114
[2025-06-05 18:49:04] 2025-06-05 22:48:48,514 | INFO     | chi2: 0.8231368558755654
[2025-06-05 18:49:04] 2025-06-05 22:48:48,514 | INFO     | current chi2=0.8231368558755654 (change=4.566456933680876 %)
[2025-06-05 18:49:04] 2025-06-05 22:48:48,514 | INFO     | left removable region: 20
[2025-06-05 18:49:04] 2025-06-05 22:48:48,514 | INFO     | sum of square deviations: 729458771.8796979
[2025-06-05 18:49:04] 2025-06-05 22:48:48,515 | INFO     | sum of deviations: -3609358522.2030067
[2025-06-05 18:49:04] 2025-06-05 22:48:48,515 | INFO     | mean x: 1749158988.3984962
[2025-06-05 18:49:04] 2025-06-05 22:48:48,515 | INFO     | mean y: 2402059.984962406
[2025-06-05 18:49:04] 2025-06-05 22:48:48,515 | INFO     | -- intersect: 8657232387.401049
[2025-06-05 18:49:04] 2025-06-05 22:48:48,515 | INFO     | intersect: 8657232387.401049
[2025-06-05 18:49:04] 2025-06-05 22:48:48,515 | INFO     | chi2: 0.029141892055376938
[2025-06-05 18:49:04] 2025-06-05 22:48:48,516 | INFO     | -- intersect: 8657232387.401049
[2025-06-05 18:49:04] 2025-06-05 22:48:48,516 | INFO     | current memory leak: -4.95 B/s (using 133 data points, chi2=0.03)
[2025-06-05 18:49:04] 2025-06-05 22:48:48,516 | INFO     | ..............................
[2025-06-05 18:49:04] 2025-06-05 22:48:48,516 | INFO     | . Timing measurements:
[2025-06-05 18:49:04] 2025-06-05 22:48:48,516 | INFO     | . get job = 0 s
[2025-06-05 18:49:04] 2025-06-05 22:48:48,516 | INFO     | . initial setup = 3 s
[2025-06-05 18:49:04] 2025-06-05 22:48:48,516 | INFO     | . payload setup = 7 s
[2025-06-05 18:49:04] 2025-06-05 22:48:48,517 | INFO     | . stage-in = 0 s
[2025-06-05 18:49:04] 2025-06-05 22:48:48,517 | INFO     | . payload execution = 9971 s
[2025-06-05 18:49:04] 2025-06-05 22:48:48,517 | INFO     | . stage-out = 1 s
[2025-06-05 18:49:04] 2025-06-05 22:48:48,517 | INFO     | . log creation = 0 s
[2025-06-05 18:49:04] 2025-06-05 22:48:48,517 | INFO     | ..............................
[2025-06-05 18:49:04] 2025-06-05 22:48:48,617 | INFO     | 
[2025-06-05 18:49:04] 2025-06-05 22:48:48,617 | INFO     | job summary report
[2025-06-05 18:49:04] 2025-06-05 22:48:48,618 | INFO     | --------------------------------------------------
[2025-06-05 18:49:04] 2025-06-05 22:48:48,618 | INFO     | PanDA job id: 6668327150
[2025-06-05 18:49:04] 2025-06-05 22:48:48,618 | INFO     | task id: 44871837
[2025-06-05 18:49:04] 2025-06-05 22:48:48,618 | INFO     | errors: (none)
[2025-06-05 18:49:04] 2025-06-05 22:48:48,618 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 18:49:04] 2025-06-05 22:48:48,618 | INFO     | pilot state: finished 
[2025-06-05 18:49:04] 2025-06-05 22:48:48,618 | INFO     | transexitcode: 0
[2025-06-05 18:49:04] 2025-06-05 22:48:48,618 | INFO     | exeerrorcode: 0
[2025-06-05 18:49:04] 2025-06-05 22:48:48,618 | INFO     | exeerrordiag: 
[2025-06-05 18:49:04] 2025-06-05 22:48:48,618 | INFO     | exitcode: 0
[2025-06-05 18:49:04] 2025-06-05 22:48:48,618 | INFO     | exitmsg: OK
[2025-06-05 18:49:04] 2025-06-05 22:48:48,618 | INFO     | cpuconsumptiontime: 51655 s
[2025-06-05 18:49:04] 2025-06-05 22:48:48,618 | INFO     | nevents: 400
[2025-06-05 18:49:04] 2025-06-05 22:48:48,618 | INFO     | neventsw: 0
[2025-06-05 18:49:04] 2025-06-05 22:48:48,618 | INFO     | pid: 3553081
[2025-06-05 18:49:04] 2025-06-05 22:48:48,618 | INFO     | pgrp: 3553081
[2025-06-05 18:49:04] 2025-06-05 22:48:48,618 | INFO     | corecount: 12
[2025-06-05 18:49:04] 2025-06-05 22:48:48,619 | INFO     | event service: False
[2025-06-05 18:49:04] 2025-06-05 22:48:48,619 | INFO     | sizes: {0: 2397341, 4: 2397547, 11: 2397575, 9982: 2426142, 9984: 2435139, 9999: 2435253}
[2025-06-05 18:49:04] 2025-06-05 22:48:48,619 | INFO     | --------------------------------------------------
[2025-06-05 18:49:04] 2025-06-05 22:48:48,619 | INFO     | 
[2025-06-05 18:49:04] 2025-06-05 22:48:48,619 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 18:49:04] 2025-06-05 22:48:48,638 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 18:49:04] 2025-06-05 22:48:48,638 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 18:49:04] 2025-06-05 22:48:48,638 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 18:49:04] 2025-06-05 22:48:48,639 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 18:49:04] 2025-06-05 22:48:48,639 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 18:49:04] 2025-06-05 22:48:48,639 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 18:49:04] 2025-06-05 22:48:48,639 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 18:49:04] 2025-06-05 22:48:48,639 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 18:49:04] 2025-06-05 22:48:48,639 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 18:49:04] 2025-06-05 22:48:48,639 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 18:49:04] 2025-06-05 22:48:48,639 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 18:49:04] 2025-06-05 22:48:48,639 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 18:49:04] 2025-06-05 22:48:48,639 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 18:49:04] 2025-06-05 22:48:48,639 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 18:49:04] 2025-06-05 22:48:48,639 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 18:49:04] 2025-06-05 22:48:48,639 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 18:49:04] 2025-06-05 22:48:48,639 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 18:49:04] 2025-06-05 22:48:48,639 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 18:49:04] 2025-06-05 22:48:48,639 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 18:49:04] 2025-06-05 22:48:48,640 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 18:49:04] 2025-06-05 22:48:48,640 | INFO     | job 6668327150 has completed (purged errors)
[2025-06-05 18:49:04] 2025-06-05 22:48:48,640 | INFO     | overall cleanup function is called
[2025-06-05 18:49:04] 2025-06-05 22:48:49,647 | INFO     | --- collectZombieJob: --- 10, [3553081]
[2025-06-05 18:49:04] 2025-06-05 22:48:49,652 | INFO     | zombie collector waiting for pid 3553081
[2025-06-05 18:49:04] 2025-06-05 22:48:49,652 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 18:49:04] 2025-06-05 22:48:49,652 | INFO     | collected zombie processes
[2025-06-05 18:49:04] 2025-06-05 22:48:49,652 | INFO     | will attempt to kill all subprocesses of pid=3553081
[2025-06-05 18:49:04] 2025-06-05 22:48:50,042 | INFO     | process IDs to be killed: [3553081] (in reverse order)
[2025-06-05 18:49:04] 2025-06-05 22:48:50,329 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 18:49:04] 2025-06-05 22:48:50,329 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 18:49:04] 2025-06-05 22:48:50,355 | INFO     | did not find any defunct processes belonging to 3553081
[2025-06-05 18:49:04] 2025-06-05 22:48:50,382 | INFO     | did not find any defunct processes belonging to 3553081
[2025-06-05 18:49:04] 2025-06-05 22:48:50,382 | INFO     | ready for new job
[2025-06-05 18:49:04] 2025-06-05 22:48:50,382 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 18:49:04] 2025-06-05 22:48:50,384 | INFO     | **************************************
[2025-06-05 18:49:04] 2025-06-05 22:48:50,384 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 18:49:04] 2025-06-05 22:48:50,384 | INFO     | **************************************
[2025-06-05 18:49:04] 2025-06-05 22:48:50,385 | INFO     | 
[2025-06-05 18:49:04] 2025-06-05 22:48:50,401 | INFO     | architecture information:
[2025-06-05 18:49:04] 2025-06-05 22:48:50,406 | INFO     | executing command: cat /etc/os-release
[2025-06-05 18:49:04] 2025-06-05 22:48:50,513 | INFO     | cat /etc/os-release:
[2025-06-05 18:49:04] NAME="CentOS Linux"
[2025-06-05 18:49:04] VERSION="7 (Core)"
[2025-06-05 18:49:04] ID="centos"
[2025-06-05 18:49:04] ID_LIKE="rhel fedora"
[2025-06-05 18:49:04] VERSION_ID="7"
[2025-06-05 18:49:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 18:49:04] ANSI_COLOR="0;31"
[2025-06-05 18:49:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 18:49:04] HOME_URL="https://www.centos.org/"
[2025-06-05 18:49:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 18:49:04] 
[2025-06-05 18:49:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 18:49:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 18:49:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 18:49:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 18:49:04] 
[2025-06-05 18:49:04] 2025-06-05 22:48:50,513 | INFO     | **************************************
[2025-06-05 18:49:04] 2025-06-05 22:48:51,017 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 18:49:04] 2025-06-05 22:48:51,099 | INFO     | sufficient remaining disk space (76547096576 B)
[2025-06-05 18:49:04] 2025-06-05 22:48:51,099 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 18:49:04] 2025-06-05 22:48:51,099 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 18:49:04] 2025-06-05 22:48:51,099 | INFO     | update_server=False
[2025-06-05 18:49:04] 2025-06-05 22:48:51,099 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 18:49:04] 2025-06-05 22:48:51,100 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 18:49:04] 2025-06-05 22:48:51,101 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 18:49:04] 2025-06-05 22:48:51,101 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 18:49:04] 2025-06-05 22:48:51,101 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 18:49:04] 2025-06-05 22:48:51,264 | INFO     | all data control threads have been joined
[2025-06-05 18:49:04] 2025-06-05 22:48:51,284 | INFO     | all job control threads have been joined
[2025-06-05 18:49:04] 2025-06-05 22:48:51,654 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 18:49:04] 2025-06-05 22:48:51,654 | INFO     | aborting loop
[2025-06-05 18:49:04] 2025-06-05 22:48:51,667 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 18:49:04] 2025-06-05 22:48:52,034 | INFO     | all payload control threads have been joined
[2025-06-05 18:49:04] 2025-06-05 22:48:52,108 | INFO     | [job] retrieve thread has finished
[2025-06-05 18:49:04] 2025-06-05 22:48:52,272 | INFO     | [data] control thread has finished
[2025-06-05 18:49:04] 2025-06-05 22:48:52,292 | INFO     | [job] control thread has finished
[2025-06-05 18:49:04] 2025-06-05 22:48:52,309 | INFO     | [payload] validate_post thread has finished
[2025-06-05 18:49:04] 2025-06-05 22:48:52,430 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 18:49:04] 2025-06-05 22:48:52,659 | INFO     | [job] job monitor thread has finished
[2025-06-05 18:49:04] 2025-06-05 22:48:52,817 | INFO     | [payload] failed_post thread has finished
[2025-06-05 18:49:04] 2025-06-05 22:48:52,860 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 18:49:04] 2025-06-05 22:48:52,860 | INFO     | [job] validate thread has finished
[2025-06-05 18:49:04] 2025-06-05 22:48:53,014 | INFO     | [data] copytool_in thread has finished
[2025-06-05 18:49:04] 2025-06-05 22:48:53,040 | INFO     | [payload] control thread has finished
[2025-06-05 18:49:04] 2025-06-05 22:48:53,048 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 18:49:04] 2025-06-05 22:48:53,237 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 18:49:04] 2025-06-05 22:48:53,396 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 18:49:04] 2025-06-05 22:48:53,633 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 18:49:04] 2025-06-05 22:48:53,674 | INFO     | [data] copytool_out thread has finished
[2025-06-05 18:49:04] 2025-06-05 22:48:54,639 | INFO     | [job] queue monitor thread has finished
[2025-06-05 18:49:04] 2025-06-05 22:48:57,246 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 18:49:04] 2025-06-05 22:48:59,080 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140597014353728)>', '<ExcThread(monitor, started 140596651992832)>']
[2025-06-05 18:49:04] 2025-06-05 22:48:59,147 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 18:49:04] 2025-06-05 22:48:59,148 | INFO     | [monitor] control thread has ended
[2025-06-05 18:49:04] 2025-06-05 22:49:04,105 | INFO     | all workflow threads have been joined
[2025-06-05 18:49:04] 2025-06-05 22:49:04,106 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 18:49:04] 2025-06-05 22:49:04,106 | INFO     | traces error code: 0
[2025-06-05 18:49:04] 2025-06-05 22:49:04,106 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 18:49:04] 2025-06-05 22:49:04,808 [wrapper] ==== pilot stdout END ====
[2025-06-05 18:49:04] 2025-06-05 22:49:04,811 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 18:49:04] 2025-06-05 22:49:04,814 [wrapper] pilotpid: 3546406
[2025-06-05 18:49:04] 2025-06-05 22:49:04,817 [wrapper] Pilot exit status: 0
[2025-06-05 18:49:04] 2025-06-05 22:49:04,834 [wrapper] pandaids: 6668327150
[2025-06-05 18:49:04] 2025-06-05 22:49:04,888 [wrapper] cleanup supervisor_pilot 3842717 3546407
[2025-06-05 18:49:04] 2025-06-05 22:49:04,891 [wrapper] Test setup, not cleaning
[2025-06-05 18:49:04] 2025-06-05 22:49:04,894 [wrapper] apfmon messages muted
[2025-06-05 18:49:04] 2025-06-05 22:49:04,897 [wrapper] ==== wrapper stdout END ====
[2025-06-05 18:49:04] 2025-06-05 22:49:04,899 [wrapper] ==== wrapper stderr END ====
[2025-06-05 18:49:04]  *** Error codes and diagnostics ***
[2025-06-05 18:49:04]     "exeErrorCode": 0,
[2025-06-05 18:49:04]     "exeErrorDiag": "",
[2025-06-05 18:49:04]     "pilotErrorCode": 0,
[2025-06-05 18:49:04]     "pilotErrorDiag": "",
[2025-06-05 18:49:04]  *** Listing of results directory ***
[2025-06-05 18:49:04] total 419580
[2025-06-05 18:49:04] -rw-r--r--. 1 boincer umatlas      5111 May 28 06:53 queuedata.json
[2025-06-05 18:49:04] -rw-r--r--. 1 boincer umatlas    495897 May 28 06:54 pilot3.tar.gz
[2025-06-05 18:49:04] -rwx------. 1 boincer umatlas     37140 May 28 06:54 runpilot2-wrapper.sh
[2025-06-05 18:49:04] -rw-r--r--. 1 boincer umatlas       100 Jun  5 16:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 18:49:04] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  5 16:01 run_atlas
[2025-06-05 18:49:04] -rw-r--r--. 1 boincer umatlas       105 Jun  5 16:01 job.xml
[2025-06-05 18:49:04] -rw-r--r--. 2 boincer umatlas 222666443 Jun  5 16:01 EVNT.44871834._003249.pool.root.1
[2025-06-05 18:49:04] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 16:01 start_atlas.sh
[2025-06-05 18:49:04] drwxrwx--x. 2 boincer umatlas      4096 Jun  5 16:01 shared
[2025-06-05 18:49:04] -rw-r--r--. 2 boincer umatlas    508874 Jun  5 16:01 input.tar.gz
[2025-06-05 18:49:04] -rw-r--r--. 1 boincer umatlas         0 Jun  5 16:01 boinc_lockfile
[2025-06-05 18:49:04] -rw-r--r--. 1 boincer umatlas      2558 Jun  5 16:01 pandaJob.out
[2025-06-05 18:49:04] -rw-------. 1 boincer umatlas    987599 Jun  5 16:01 agis_schedconf.cvmfs.json
[2025-06-05 18:49:04] -rw-------. 1 boincer umatlas   1598969 Jun  5 16:01 agis_ddmendpoints.agis.ALL.json
[2025-06-05 18:49:04] drwx------. 4 boincer umatlas      4096 Jun  5 16:01 pilot3
[2025-06-05 18:49:04] -rw-------. 1 boincer umatlas 200550002 Jun  5 18:47 HITS.44871837._083238.pool.root.1
[2025-06-05 18:49:04] -rw-------. 1 boincer umatlas        95 Jun  5 18:47 pilot_heartbeat.json
[2025-06-05 18:49:04] -rw-r--r--. 1 boincer umatlas       529 Jun  5 18:48 boinc_task_state.xml
[2025-06-05 18:49:04] -rw-------. 1 boincer umatlas      1039 Jun  5 18:48 memory_monitor_summary.json
[2025-06-05 18:49:04] -rw-------. 1 boincer umatlas    417021 Jun  5 18:48 log.44871837._083238.job.log.tgz.1
[2025-06-05 18:49:04] -rw-------. 1 boincer umatlas      7715 Jun  5 18:48 heartbeat.json
[2025-06-05 18:49:04] -rw-r--r--. 1 boincer umatlas        27 Jun  5 18:49 wrapper_checkpoint.txt
[2025-06-05 18:49:04] -rw-------. 1 boincer umatlas      4476 Jun  5 18:49 pilotlog.txt
[2025-06-05 18:49:04] -rw-r--r--. 1 boincer umatlas      6840 Jun  5 18:49 init_data.xml
[2025-06-05 18:49:04] -rw-r--r--. 1 boincer umatlas      8192 Jun  5 18:49 boinc_mmap_file
[2025-06-05 18:49:04] -rw-------. 1 boincer umatlas    882072 Jun  5 18:49 log.44871837._083238.job.log.1
[2025-06-05 18:49:04] -rw-------. 1 boincer umatlas       357 Jun  5 18:49 output.list
[2025-06-05 18:49:04] -rw-r--r--. 1 boincer umatlas       620 Jun  5 18:49 runtime_log
[2025-06-05 18:49:04] -rw-------. 1 boincer umatlas   1320960 Jun  5 18:49 result.tar.gz
[2025-06-05 18:49:04] -rw-r--r--. 1 boincer umatlas      8662 Jun  5 18:49 runtime_log.err
[2025-06-05 18:49:04] -rw-------. 1 boincer umatlas       655 Jun  5 18:49 jDIMDm5bTe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmoybKDmD3Rx5n.diag
[2025-06-05 18:49:04] -rw-r--r--. 1 boincer umatlas     20918 Jun  5 18:49 stderr.txt
[2025-06-05 18:49:05] HITS file was successfully produced:
[2025-06-05 18:49:05] -rw-------. 1 boincer umatlas 200550002 Jun  5 18:47 shared/HITS.pool.root.1
[2025-06-05 18:49:05]  *** Contents of shared directory: ***
[2025-06-05 18:49:05] total 415112
[2025-06-05 18:49:05] -rw-r--r--. 2 boincer umatlas 222666443 Jun  5 16:01 ATLAS.root_0
[2025-06-05 18:49:05] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 16:01 start_atlas.sh
[2025-06-05 18:49:05] -rw-r--r--. 2 boincer umatlas    508874 Jun  5 16:01 input.tar.gz
[2025-06-05 18:49:05] -rw-------. 1 boincer umatlas 200550002 Jun  5 18:47 HITS.pool.root.1
[2025-06-05 18:49:05] -rw-------. 1 boincer umatlas   1320960 Jun  5 18:49 result.tar.gz
18:49:27 (3542395): run_atlas exited; CPU time 51858.086842
18:49:27 (3542395): called boinc_finish(0)

</stderr_txt>
]]>

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