Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:39:10 (36843): wrapper (7.7.26015): starting
15:39:10 (36843): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 15:39:10] Arguments: --nthreads 8
[2025-06-05 15:39:10] Threads: 8
[2025-06-05 15:39:10] Checking for CVMFS
[2025-06-05 15:39:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 15:39:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 15:39:10] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 15:39:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 15:39:10] 2.11.2.0 5089 30653 309256 146830 2 534 16107035 18432000 8326 130560 0 109388549 99.523 102390840 35026 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-05 15:39:10] CVMFS is ok
[2025-06-05 15:39:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 15:39:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 15:39:10] Further information can be found at the LHC@home message board.
[2025-06-05 15:39:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 15:39:10] Checking for apptainer binary...
[2025-06-05 15:39:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 15:39:10] Running /usr/bin/apptainer --version
[2025-06-05 15:39:10] apptainer version 1.3.2-1.el7
[2025-06-05 15:39:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 15:39:11] c-211-40.aglt2.org
[2025-06-05 15:39:11] apptainer works
[2025-06-05 15:39:11] Set ATHENA_PROC_NUMBER=8
[2025-06-05 15:39:11] Set ATHENA_CORE_NUMBER=8
[2025-06-05 15:39:11] Starting ATLAS job with PandaID=6668313457
[2025-06-05 15:39:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 17:16:58]  *** The last 200 lines of the pilot log: ***
[2025-06-05 17:16:58]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-05 17:16:58]  is_altstaged=None
[2025-06-05 17:16:58]  is_tar=False
[2025-06-05 17:16:58]  lfn=log.44871837._082279.job.log.tgz.1
[2025-06-05 17:16:58]  mtime=0
[2025-06-05 17:16:58]  protocol_id=None
[2025-06-05 17:16:58]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-05 17:16:58]  replicas=None
[2025-06-05 17:16:58]  scope=mc23_13p6TeV
[2025-06-05 17:16:58]  status=None
[2025-06-05 17:16:58]  status_code=0
[2025-06-05 17:16:58]  storage_token=
[2025-06-05 17:16:58]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6668313457/log.44871837._082279.job.log.tgz.1
[2025-06-05 17:16:58]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/05/f6/log.44871837._082279.job.log.tgz.1
[2025-06-05 17:16:58]  workdir=None
[2025-06-05 17:16:58] ]
[2025-06-05 17:16:58] 2025-06-05 21:16:33,939 | INFO     | transferring file log.44871837._082279.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6668313457/log.44871837._082279.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-05 17:16:58] 2025-06-05 21:16:33,939 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6668313457/log.44871837._082279.job.log.tgz.1 /tmp/boinchome/slots/0/log.44871837._082279.job
[2025-06-05 17:16:58] 2025-06-05 21:16:33,981 | INFO     | adding to output.list: log.44871837._082279.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/05/f6/log.44871837._082279.job.log.tg
[2025-06-05 17:16:58] 2025-06-05 21:16:33,981 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-05 17:16:58] 2025-06-05 21:16:33,981 | INFO     | summary of transferred files:
[2025-06-05 17:16:58] 2025-06-05 21:16:33,982 | INFO     |  -- lfn=log.44871837._082279.job.log.tgz.1, status_code=0, status=transferred
[2025-06-05 17:16:58] 2025-06-05 21:16:33,982 | INFO     | stage-out finished correctly
[2025-06-05 17:16:58] 2025-06-05 21:16:34,235 | INFO     | PID=45319 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-05 17:16:58] 2025-06-05 21:16:34,235 | INFO     | .. there are 9 such processes running
[2025-06-05 17:16:58] 2025-06-05 21:16:34,935 | INFO     | monitor loop #437: job 0:6668313457 is in state 'finished'
[2025-06-05 17:16:58] 2025-06-05 21:16:34,935 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 17:16:58] 2025-06-05 21:16:35,100 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-05 17:16:58] 2025-06-05 21:16:35,152 | INFO     | job 6668313457 has state=finished
[2025-06-05 17:16:58] 2025-06-05 21:16:35,152 | INFO     | preparing for final server update for job 6668313457 in state='finished'
[2025-06-05 17:16:58] 2025-06-05 21:16:35,153 | INFO     | this job has now completed (state=finished)
[2025-06-05 17:16:58] 2025-06-05 21:16:35,153 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-05 17:16:58] 2025-06-05 21:16:35,153 | INFO     | log transfer has been attempted: DONE
[2025-06-05 17:16:58] 2025-06-05 21:16:35,153 | INFO     | job 6668313457 has finished - writing final server update
[2025-06-05 17:16:58] 2025-06-05 21:16:35,153 | INFO     | total number of processed events: 400 (read)
[2025-06-05 17:16:58] 2025-06-05 21:16:35,156 | INFO     | executing command: lscpu
[2025-06-05 17:16:58] 2025-06-05 21:16:35,190 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 17:16:58] 2025-06-05 21:16:37,438 | INFO     | monitor loop #438: job 0:6668313457 is in state 'finished'
[2025-06-05 17:16:58] 2025-06-05 21:16:37,438 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 17:16:58] 2025-06-05 21:16:38,761 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 17:16:58] 2025-06-05 21:16:38,762 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6668313457/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 17:16:58] 2025-06-05 21:16:38,762 | INFO     | extracted standard info from prmon json
[2025-06-05 17:16:58] 2025-06-05 21:16:38,762 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 17:16:58] 2025-06-05 21:16:38,762 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 17:16:58] 2025-06-05 21:16:38,762 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 17:16:58] 2025-06-05 21:16:38,762 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 17:16:58] 2025-06-05 21:16:38,764 | INFO     | fitting pss+swap vs Time
[2025-06-05 17:16:58] 2025-06-05 21:16:38,764 | INFO     | sum of square deviations: 218571540.0
[2025-06-05 17:16:58] 2025-06-05 21:16:38,764 | INFO     | sum of deviations: -12996572160.0
[2025-06-05 17:16:58] 2025-06-05 21:16:38,764 | INFO     | mean x: 1749155372.0
[2025-06-05 17:16:58] 2025-06-05 21:16:38,764 | INFO     | mean y: 2589316.584269663
[2025-06-05 17:16:58] 2025-06-05 21:16:38,764 | INFO     | -- intersect: 104009835691.15639
[2025-06-05 17:16:58] 2025-06-05 21:16:38,764 | INFO     | intersect: 104009835691.15639
[2025-06-05 17:16:58] 2025-06-05 21:16:38,764 | INFO     | chi2: 0.10227435709306373
[2025-06-05 17:16:58] 2025-06-05 21:16:38,764 | INFO     | -- intersect: 104009835691.15639
[2025-06-05 17:16:58] 2025-06-05 21:16:38,765 | INFO     | current memory leak: -59.46 B/s (using 89 data points, chi2=0.10)
[2025-06-05 17:16:58] 2025-06-05 21:16:38,765 | INFO     | ..............................
[2025-06-05 17:16:58] 2025-06-05 21:16:38,765 | INFO     | . Timing measurements:
[2025-06-05 17:16:58] 2025-06-05 21:16:38,765 | INFO     | . get job = 0 s
[2025-06-05 17:16:58] 2025-06-05 21:16:38,765 | INFO     | . initial setup = 2 s
[2025-06-05 17:16:58] 2025-06-05 21:16:38,765 | INFO     | . payload setup = 5 s
[2025-06-05 17:16:58] 2025-06-05 21:16:38,765 | INFO     | . stage-in = 0 s
[2025-06-05 17:16:58] 2025-06-05 21:16:38,765 | INFO     | . payload execution = 5810 s
[2025-06-05 17:16:58] 2025-06-05 21:16:38,765 | INFO     | . stage-out = 0 s
[2025-06-05 17:16:58] 2025-06-05 21:16:38,765 | INFO     | . log creation = 0 s
[2025-06-05 17:16:58] 2025-06-05 21:16:38,765 | INFO     | ..............................
[2025-06-05 17:16:58] 2025-06-05 21:16:38,885 | INFO     | 
[2025-06-05 17:16:58] 2025-06-05 21:16:38,886 | INFO     | job summary report
[2025-06-05 17:16:58] 2025-06-05 21:16:38,886 | INFO     | --------------------------------------------------
[2025-06-05 17:16:58] 2025-06-05 21:16:38,886 | INFO     | PanDA job id: 6668313457
[2025-06-05 17:16:58] 2025-06-05 21:16:38,886 | INFO     | task id: 44871837
[2025-06-05 17:16:58] 2025-06-05 21:16:38,886 | INFO     | errors: (none)
[2025-06-05 17:16:58] 2025-06-05 21:16:38,886 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 17:16:58] 2025-06-05 21:16:38,886 | INFO     | pilot state: finished 
[2025-06-05 17:16:58] 2025-06-05 21:16:38,886 | INFO     | transexitcode: 0
[2025-06-05 17:16:58] 2025-06-05 21:16:38,886 | INFO     | exeerrorcode: 0
[2025-06-05 17:16:58] 2025-06-05 21:16:38,886 | INFO     | exeerrordiag: 
[2025-06-05 17:16:58] 2025-06-05 21:16:38,886 | INFO     | exitcode: 0
[2025-06-05 17:16:58] 2025-06-05 21:16:38,886 | INFO     | exitmsg: OK
[2025-06-05 17:16:58] 2025-06-05 21:16:38,886 | INFO     | cpuconsumptiontime: 39929 s
[2025-06-05 17:16:58] 2025-06-05 21:16:38,886 | INFO     | nevents: 400
[2025-06-05 17:16:58] 2025-06-05 21:16:38,886 | INFO     | neventsw: 0
[2025-06-05 17:16:58] 2025-06-05 21:16:38,886 | INFO     | pid: 54234
[2025-06-05 17:16:58] 2025-06-05 21:16:38,886 | INFO     | pgrp: 54234
[2025-06-05 17:16:58] 2025-06-05 21:16:38,886 | INFO     | corecount: 8
[2025-06-05 17:16:58] 2025-06-05 21:16:38,886 | INFO     | event service: False
[2025-06-05 17:16:58] 2025-06-05 21:16:38,887 | INFO     | sizes: {0: 2397221, 1: 2397420, 3: 2397626, 11: 2397654, 5820: 2424414, 5821: 2433355, 5822: 2433539, 5826: 2433709}
[2025-06-05 17:16:58] 2025-06-05 21:16:38,887 | INFO     | --------------------------------------------------
[2025-06-05 17:16:58] 2025-06-05 21:16:38,887 | INFO     | 
[2025-06-05 17:16:58] 2025-06-05 21:16:38,887 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 17:16:58] 2025-06-05 21:16:38,905 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 17:16:58] 2025-06-05 21:16:38,905 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 17:16:58] 2025-06-05 21:16:38,905 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 17:16:58] 2025-06-05 21:16:38,905 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 17:16:58] 2025-06-05 21:16:38,905 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 17:16:58] 2025-06-05 21:16:38,905 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 17:16:58] 2025-06-05 21:16:38,905 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 17:16:58] 2025-06-05 21:16:38,905 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 17:16:58] 2025-06-05 21:16:38,905 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 17:16:58] 2025-06-05 21:16:38,905 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 17:16:58] 2025-06-05 21:16:38,906 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 17:16:58] 2025-06-05 21:16:38,906 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 17:16:58] 2025-06-05 21:16:38,906 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 17:16:58] 2025-06-05 21:16:38,906 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 17:16:58] 2025-06-05 21:16:38,906 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 17:16:58] 2025-06-05 21:16:38,906 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 17:16:58] 2025-06-05 21:16:38,906 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 17:16:58] 2025-06-05 21:16:38,906 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 17:16:58] 2025-06-05 21:16:38,906 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 17:16:58] 2025-06-05 21:16:38,906 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 17:16:58] 2025-06-05 21:16:38,906 | INFO     | job 6668313457 has completed (purged errors)
[2025-06-05 17:16:58] 2025-06-05 21:16:38,906 | INFO     | overall cleanup function is called
[2025-06-05 17:16:58] 2025-06-05 21:16:39,908 | INFO     | --- collectZombieJob: --- 10, [54234]
[2025-06-05 17:16:58] 2025-06-05 21:16:39,908 | INFO     | zombie collector waiting for pid 54234
[2025-06-05 17:16:58] 2025-06-05 21:16:39,909 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 17:16:58] 2025-06-05 21:16:39,909 | INFO     | collected zombie processes
[2025-06-05 17:16:58] 2025-06-05 21:16:39,909 | INFO     | will attempt to kill all subprocesses of pid=54234
[2025-06-05 17:16:58] 2025-06-05 21:16:40,031 | INFO     | process IDs to be killed: [54234] (in reverse order)
[2025-06-05 17:16:58] 2025-06-05 21:16:40,099 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 17:16:58] 2025-06-05 21:16:40,099 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 17:16:58] 2025-06-05 21:16:40,104 | INFO     | did not find any defunct processes belonging to 54234
[2025-06-05 17:16:58] 2025-06-05 21:16:40,107 | INFO     | did not find any defunct processes belonging to 54234
[2025-06-05 17:16:58] 2025-06-05 21:16:40,107 | INFO     | ready for new job
[2025-06-05 17:16:58] 2025-06-05 21:16:40,108 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 17:16:58] 2025-06-05 21:16:40,108 | INFO     | **************************************
[2025-06-05 17:16:58] 2025-06-05 21:16:40,109 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 17:16:58] 2025-06-05 21:16:40,109 | INFO     | **************************************
[2025-06-05 17:16:58] 2025-06-05 21:16:40,109 | INFO     | 
[2025-06-05 17:16:58] 2025-06-05 21:16:40,111 | INFO     | architecture information:
[2025-06-05 17:16:58] 2025-06-05 21:16:40,111 | INFO     | executing command: cat /etc/os-release
[2025-06-05 17:16:58] 2025-06-05 21:16:40,128 | INFO     | cat /etc/os-release:
[2025-06-05 17:16:58] NAME="CentOS Linux"
[2025-06-05 17:16:58] VERSION="7 (Core)"
[2025-06-05 17:16:58] ID="centos"
[2025-06-05 17:16:58] ID_LIKE="rhel fedora"
[2025-06-05 17:16:58] VERSION_ID="7"
[2025-06-05 17:16:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 17:16:58] ANSI_COLOR="0;31"
[2025-06-05 17:16:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 17:16:58] HOME_URL="https://www.centos.org/"
[2025-06-05 17:16:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 17:16:58] 
[2025-06-05 17:16:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 17:16:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 17:16:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 17:16:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 17:16:58] 
[2025-06-05 17:16:58] 2025-06-05 21:16:40,128 | INFO     | **************************************
[2025-06-05 17:16:58] 2025-06-05 21:16:40,629 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 17:16:58] 2025-06-05 21:16:40,646 | INFO     | sufficient remaining disk space (77244399616 B)
[2025-06-05 17:16:58] 2025-06-05 21:16:40,646 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 17:16:58] 2025-06-05 21:16:40,646 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 17:16:58] 2025-06-05 21:16:40,646 | INFO     | update_server=False
[2025-06-05 17:16:58] 2025-06-05 21:16:40,646 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 17:16:58] 2025-06-05 21:16:40,646 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 17:16:58] 2025-06-05 21:16:40,647 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 17:16:58] 2025-06-05 21:16:40,647 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 17:16:58] 2025-06-05 21:16:40,647 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 17:16:58] 2025-06-05 21:16:40,647 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 17:16:58] 2025-06-05 21:16:40,774 | INFO     | all job control threads have been joined
[2025-06-05 17:16:58] 2025-06-05 21:16:40,945 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 17:16:58] 2025-06-05 21:16:40,945 | INFO     | aborting loop
[2025-06-05 17:16:58] 2025-06-05 21:16:41,154 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 17:16:58] 2025-06-05 21:16:41,232 | INFO     | all payload control threads have been joined
[2025-06-05 17:16:58] 2025-06-05 21:16:41,492 | INFO     | all data control threads have been joined
[2025-06-05 17:16:58] 2025-06-05 21:16:41,650 | INFO     | [job] retrieve thread has finished
[2025-06-05 17:16:58] 2025-06-05 21:16:41,652 | INFO     | [job] queue monitor thread has finished
[2025-06-05 17:16:58] 2025-06-05 21:16:41,694 | INFO     | [payload] validate_post thread has finished
[2025-06-05 17:16:58] 2025-06-05 21:16:41,779 | INFO     | [job] control thread has finished
[2025-06-05 17:16:58] 2025-06-05 21:16:41,943 | INFO     | [job] validate thread has finished
[2025-06-05 17:16:58] 2025-06-05 21:16:41,945 | INFO     | [job] job monitor thread has finished
[2025-06-05 17:16:58] 2025-06-05 21:16:42,044 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 17:16:58] 2025-06-05 21:16:42,232 | INFO     | [payload] control thread has finished
[2025-06-05 17:16:58] 2025-06-05 21:16:42,360 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 17:16:58] 2025-06-05 21:16:42,492 | INFO     | [data] control thread has finished
[2025-06-05 17:16:58] 2025-06-05 21:16:42,511 | INFO     | [data] copytool_in thread has finished
[2025-06-05 17:16:58] 2025-06-05 21:16:42,637 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 17:16:58] 2025-06-05 21:16:42,932 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 17:16:58] 2025-06-05 21:16:43,123 | INFO     | [payload] failed_post thread has finished
[2025-06-05 17:16:58] 2025-06-05 21:16:44,044 | INFO     | [data] copytool_out thread has finished
[2025-06-05 17:16:58] 2025-06-05 21:16:45,156 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 17:16:58] 2025-06-05 21:16:51,325 | INFO     | job.realtimelogging is not enabled
[2025-06-05 17:16:58] 2025-06-05 21:16:52,331 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 17:16:58] 2025-06-05 21:16:52,896 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140460217911104)>', '<ExcThread(monitor, started 140459632477952)>']
[2025-06-05 17:16:58] 2025-06-05 21:16:53,687 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 17:16:58] 2025-06-05 21:16:53,687 | INFO     | [monitor] control thread has ended
[2025-06-05 17:16:58] 2025-06-05 21:16:57,899 | INFO     | all workflow threads have been joined
[2025-06-05 17:16:58] 2025-06-05 21:16:57,899 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 17:16:58] 2025-06-05 21:16:57,900 | INFO     | traces error code: 0
[2025-06-05 17:16:58] 2025-06-05 21:16:57,900 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 17:16:58] 2025-06-05 21:16:57,968 [wrapper] ==== pilot stdout END ====
[2025-06-05 17:16:58] 2025-06-05 21:16:57,972 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 17:16:58] 2025-06-05 21:16:57,975 [wrapper] pilotpid: 45319
[2025-06-05 17:16:58] 2025-06-05 21:16:57,982 [wrapper] Pilot exit status: 0
[2025-06-05 17:16:58] 2025-06-05 21:16:57,992 [wrapper] pandaids: 6668313457
[2025-06-05 17:16:58] 2025-06-05 21:16:58,040 [wrapper] cleanup supervisor_pilot 48828 45320
[2025-06-05 17:16:58] 2025-06-05 21:16:58,042 [wrapper] Test setup, not cleaning
[2025-06-05 17:16:58] 2025-06-05 21:16:58,045 [wrapper] apfmon messages muted
[2025-06-05 17:16:58] 2025-06-05 21:16:58,048 [wrapper] ==== wrapper stdout END ====
[2025-06-05 17:16:58] 2025-06-05 21:16:58,050 [wrapper] ==== wrapper stderr END ====
[2025-06-05 17:16:58]  *** Error codes and diagnostics ***
[2025-06-05 17:16:58]     "exeErrorCode": 0,
[2025-06-05 17:16:58]     "exeErrorDiag": "",
[2025-06-05 17:16:58]     "pilotErrorCode": 0,
[2025-06-05 17:16:58]     "pilotErrorDiag": "",
[2025-06-05 17:16:58]  *** Listing of results directory ***
[2025-06-05 17:16:58] total 415600
[2025-06-05 17:16:58] -rw-r--r-- 1 boincer umatlas    495897 May 28 05:38 pilot3.tar.gz
[2025-06-05 17:16:58] -rw-r--r-- 1 boincer umatlas      5111 May 28 05:44 queuedata.json
[2025-06-05 17:16:58] -rwx------ 1 boincer umatlas     37140 May 28 05:44 runpilot2-wrapper.sh
[2025-06-05 17:16:58] -rw-r--r-- 1 boincer umatlas       100 Jun  5 15:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 17:16:58] -rwxr-xr-x 1 boincer umatlas      7986 Jun  5 15:39 run_atlas
[2025-06-05 17:16:58] -rw-r--r-- 1 boincer umatlas       105 Jun  5 15:39 job.xml
[2025-06-05 17:16:58] -rw-r--r-- 2 boincer umatlas 226534523 Jun  5 15:39 EVNT.44871834._003211.pool.root.1
[2025-06-05 17:16:58] -rw-r--r-- 2 boincer umatlas     15093 Jun  5 15:39 start_atlas.sh
[2025-06-05 17:16:58] drwxrwx--x 2 boincer umatlas      4096 Jun  5 15:39 shared
[2025-06-05 17:16:58] -rw-r--r-- 2 boincer umatlas    508877 Jun  5 15:39 input.tar.gz
[2025-06-05 17:16:58] -rw-r--r-- 1 boincer umatlas         0 Jun  5 15:39 boinc_lockfile
[2025-06-05 17:16:58] -rw-r--r-- 1 boincer umatlas      2559 Jun  5 15:39 pandaJob.out
[2025-06-05 17:16:58] -rw------- 1 boincer umatlas    987599 Jun  5 15:39 agis_schedconf.cvmfs.json
[2025-06-05 17:16:58] -rw------- 1 boincer umatlas   1598969 Jun  5 15:39 agis_ddmendpoints.agis.ALL.json
[2025-06-05 17:16:58] drwx------ 4 boincer umatlas      4096 Jun  5 15:39 pilot3
[2025-06-05 17:16:58] -rw-r--r-- 1 boincer umatlas      6337 Jun  5 17:10 init_data.xml
[2025-06-05 17:16:58] -rw------- 1 boincer umatlas 193421250 Jun  5 17:16 HITS.44871837._082279.pool.root.1
[2025-06-05 17:16:58] -rw-r--r-- 1 boincer umatlas       529 Jun  5 17:16 boinc_task_state.xml
[2025-06-05 17:16:58] -rw------- 1 boincer umatlas        95 Jun  5 17:16 pilot_heartbeat.json
[2025-06-05 17:16:58] -rw------- 1 boincer umatlas      1074 Jun  5 17:16 memory_monitor_summary.json
[2025-06-05 17:16:58] -rw------- 1 boincer umatlas    326647 Jun  5 17:16 log.44871837._082279.job.log.tgz.1
[2025-06-05 17:16:58] -rw------- 1 boincer umatlas      7751 Jun  5 17:16 heartbeat.json
[2025-06-05 17:16:58] -rw-r--r-- 1 boincer umatlas      8192 Jun  5 17:16 boinc_mmap_file
[2025-06-05 17:16:58] -rw-r--r-- 1 boincer umatlas        27 Jun  5 17:16 wrapper_checkpoint.txt
[2025-06-05 17:16:58] -rw------- 1 boincer umatlas      4548 Jun  5 17:16 pilotlog.txt
[2025-06-05 17:16:58] -rw------- 1 boincer umatlas    566163 Jun  5 17:16 log.44871837._082279.job.log.1
[2025-06-05 17:16:58] -rw------- 1 boincer umatlas       357 Jun  5 17:16 output.list
[2025-06-05 17:16:58] -rw-r--r-- 1 boincer umatlas       620 Jun  5 17:16 runtime_log
[2025-06-05 17:16:58] -rw------- 1 boincer umatlas    911360 Jun  5 17:16 result.tar.gz
[2025-06-05 17:16:58] -rw-r--r-- 1 boincer umatlas      8659 Jun  5 17:16 runtime_log.err
[2025-06-05 17:16:58] -rw------- 1 boincer umatlas       659 Jun  5 17:16 OqWMDmNWSe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmWpbKDmuJzHHo.diag
[2025-06-05 17:16:58] -rw-r--r-- 1 boincer umatlas     21409 Jun  5 17:16 stderr.txt
[2025-06-05 17:16:58] HITS file was successfully produced:
[2025-06-05 17:16:58] -rw------- 1 boincer umatlas 193421250 Jun  5 17:16 shared/HITS.pool.root.1
[2025-06-05 17:16:58]  *** Contents of shared directory: ***
[2025-06-05 17:16:58] total 411528
[2025-06-05 17:16:58] -rw-r--r-- 2 boincer umatlas 226534523 Jun  5 15:39 ATLAS.root_0
[2025-06-05 17:16:58] -rw-r--r-- 2 boincer umatlas     15093 Jun  5 15:39 start_atlas.sh
[2025-06-05 17:16:58] -rw-r--r-- 2 boincer umatlas    508877 Jun  5 15:39 input.tar.gz
[2025-06-05 17:16:58] -rw------- 1 boincer umatlas 193421250 Jun  5 17:16 HITS.pool.root.1
[2025-06-05 17:16:58] -rw------- 1 boincer umatlas    911360 Jun  5 17:16 result.tar.gz
17:16:59 (36843): run_atlas exited; CPU time 39740.935738
17:16:59 (36843): called boinc_finish(0)

</stderr_txt>
]]>

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