Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:29:09 (823247): wrapper (7.7.26015): starting
15:29:09 (823247): wrapper: running run_atlas (--nthreads 12)
[2025-06-05 15:29:09] Arguments: --nthreads 12
[2025-06-05 15:29:09] Threads: 12
[2025-06-05 15:29:09] Checking for CVMFS
[2025-06-05 15:29:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 15:29:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 15:29:10] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 15:29:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 15:29:10] 2.12.6.0 6469 2681 181860 146830 1 447 22729775 32935937 14437 16776704 0 9856571 99.729 12494228 35637 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-05 15:29:10] CVMFS is ok
[2025-06-05 15:29:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 15:29:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 15:29:10] Further information can be found at the LHC@home message board.
[2025-06-05 15:29:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 15:29:10] Checking for apptainer binary...
[2025-06-05 15:29:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 15:29:10] Running /usr/bin/apptainer --version
[2025-06-05 15:29:10] apptainer version 1.4.1-1.el9
[2025-06-05 15:29:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 15:29:11] c6-1-26-3.aglt2.org
[2025-06-05 15:29:11] apptainer works
[2025-06-05 15:29:11] Set ATHENA_PROC_NUMBER=12
[2025-06-05 15:29:11] Set ATHENA_CORE_NUMBER=12
[2025-06-05 15:29:11] Starting ATLAS job with PandaID=6668442774
[2025-06-05 15:29:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 17:10:08]  *** The last 200 lines of the pilot log: ***
[2025-06-05 17:10:08]  storage_token=
[2025-06-05 17:10:08]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6668442774/log.44871837._084696.job.log.tgz.1
[2025-06-05 17:10:08]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a4/a2/log.44871837._084696.job.log.tgz.1
[2025-06-05 17:10:08]  workdir=None
[2025-06-05 17:10:08] ]
[2025-06-05 17:10:08] 2025-06-05 21:09:42,072 | INFO     | transferring file log.44871837._084696.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6668442774/log.44871837._084696.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-05 17:10:08] 2025-06-05 21:09:42,072 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6668442774/log.44871837._084696.job.log.tgz.1 /tmp/boinchome/slots/0/log.44871837._084696.job
[2025-06-05 17:10:08] 2025-06-05 21:09:42,091 | INFO     | adding to output.list: log.44871837._084696.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a4/a2/log.44871837._084696.job.log.tg
[2025-06-05 17:10:08] 2025-06-05 21:09:42,092 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-05 17:10:08] 2025-06-05 21:09:42,092 | INFO     | summary of transferred files:
[2025-06-05 17:10:08] 2025-06-05 21:09:42,092 | INFO     |  -- lfn=log.44871837._084696.job.log.tgz.1, status_code=0, status=transferred
[2025-06-05 17:10:08] 2025-06-05 21:09:42,093 | INFO     | stage-out finished correctly
[2025-06-05 17:10:08] 2025-06-05 21:09:43,293 | WARNING  | process 834912 can no longer be monitored (due to stat problems) - aborting
[2025-06-05 17:10:08] 2025-06-05 21:09:43,294 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6668442774/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 17:10:08] 2025-06-05 21:09:43,295 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6668442774/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 17:10:08] 2025-06-05 21:09:43,296 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3878908 B
[2025-06-05 17:10:08] 2025-06-05 21:09:43,296 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15791 B
[2025-06-05 17:10:08] 2025-06-05 21:09:43,296 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 17:10:08] 2025-06-05 21:09:43,312 | INFO     | sufficient remaining disk space (76475793408 B)
[2025-06-05 17:10:08] 2025-06-05 21:09:43,313 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-05 17:10:08] 2025-06-05 21:09:43,314 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6668442774: 4186593 B (within 2537553920 B limit)
[2025-06-05 17:10:08] 2025-06-05 21:09:43,314 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6668442774/HITS.44871837._084696.pool.root.1 does not exist (skip from workdir size calculation)
[2025-06-05 17:10:08] 2025-06-05 21:09:43,314 | INFO     | total size of present files: 0 B (workdir size: 4186593 B)
[2025-06-05 17:10:08] 2025-06-05 21:09:43,314 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6668442774/HITS.44871837._084696.pool.root.1 since it does not exist
[2025-06-05 17:10:08] 2025-06-05 21:09:43,596 | INFO     | number of running child processes to parent process 834912: 1
[2025-06-05 17:10:08] 2025-06-05 21:09:43,596 | INFO     | maximum number of monitored processes: 6
[2025-06-05 17:10:08] 2025-06-05 21:09:44,092 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-05 17:10:08] 2025-06-05 21:09:44,181 | INFO     | job 6668442774 has state=finished
[2025-06-05 17:10:08] 2025-06-05 21:09:44,181 | INFO     | preparing for final server update for job 6668442774 in state='finished'
[2025-06-05 17:10:08] 2025-06-05 21:09:44,182 | INFO     | this job has now completed (state=finished)
[2025-06-05 17:10:08] 2025-06-05 21:09:44,182 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-05 17:10:08] 2025-06-05 21:09:44,182 | INFO     | log transfer has been attempted: DONE
[2025-06-05 17:10:08] 2025-06-05 21:09:44,182 | INFO     | job 6668442774 has finished - writing final server update
[2025-06-05 17:10:08] 2025-06-05 21:09:44,182 | INFO     | total number of processed events: 400 (read)
[2025-06-05 17:10:08] 2025-06-05 21:09:44,199 | INFO     | executing command: lscpu
[2025-06-05 17:10:08] 2025-06-05 21:09:44,271 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 17:10:08] 2025-06-05 21:09:46,100 | INFO     | monitor loop #423: job 0:6668442774 is in state 'finished'
[2025-06-05 17:10:08] 2025-06-05 21:09:46,100 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 17:10:08] 2025-06-05 21:09:48,357 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-05 17:10:08] 2025-06-05 21:09:48,357 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6668442774/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 17:10:08] 2025-06-05 21:09:48,358 | INFO     | extracted standard info from prmon json
[2025-06-05 17:10:08] 2025-06-05 21:09:48,358 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 17:10:08] 2025-06-05 21:09:48,358 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 17:10:08] 2025-06-05 21:09:48,359 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 17:10:08] 2025-06-05 21:09:48,359 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 17:10:08] 2025-06-05 21:09:48,362 | INFO     | fitting pss+swap vs Time
[2025-06-05 17:10:08] 2025-06-05 21:09:48,362 | INFO     | sum of square deviations: 233682600.1318681
[2025-06-05 17:10:08] 2025-06-05 21:09:48,363 | INFO     | sum of deviations: -15693881644.109886
[2025-06-05 17:10:08] 2025-06-05 21:09:48,363 | INFO     | mean x: 1749154888.2747252
[2025-06-05 17:10:08] 2025-06-05 21:09:48,364 | INFO     | mean y: 2533836.604395604
[2025-06-05 17:10:08] 2025-06-05 21:09:48,364 | INFO     | -- intersect: 117473966362.21416
[2025-06-05 17:10:08] 2025-06-05 21:09:48,364 | INFO     | intersect: 117473966362.21416
[2025-06-05 17:10:08] 2025-06-05 21:09:48,364 | INFO     | chi2: 0.39468149233911254
[2025-06-05 17:10:08] 2025-06-05 21:09:48,364 | INFO     | -- intersect: 117473966362.21416
[2025-06-05 17:10:08] 2025-06-05 21:09:48,364 | INFO     | current memory leak: -67.16 B/s (using 91 data points, chi2=0.39)
[2025-06-05 17:10:08] 2025-06-05 21:09:48,365 | INFO     | ..............................
[2025-06-05 17:10:08] 2025-06-05 21:09:48,365 | INFO     | . Timing measurements:
[2025-06-05 17:10:08] 2025-06-05 21:09:48,365 | INFO     | . get job = 0 s
[2025-06-05 17:10:08] 2025-06-05 21:09:48,365 | INFO     | . initial setup = 4 s
[2025-06-05 17:10:08] 2025-06-05 21:09:48,365 | INFO     | . payload setup = 10 s
[2025-06-05 17:10:08] 2025-06-05 21:09:48,366 | INFO     | . stage-in = 0 s
[2025-06-05 17:10:08] 2025-06-05 21:09:48,366 | INFO     | . payload execution = 5954 s
[2025-06-05 17:10:08] 2025-06-05 21:09:48,366 | INFO     | . stage-out = 0 s
[2025-06-05 17:10:08] 2025-06-05 21:09:48,366 | INFO     | . log creation = 0 s
[2025-06-05 17:10:08] 2025-06-05 21:09:48,366 | INFO     | ..............................
[2025-06-05 17:10:08] 2025-06-05 21:09:48,866 | INFO     | 
[2025-06-05 17:10:08] 2025-06-05 21:09:48,866 | INFO     | job summary report
[2025-06-05 17:10:08] 2025-06-05 21:09:48,866 | INFO     | --------------------------------------------------
[2025-06-05 17:10:08] 2025-06-05 21:09:48,866 | INFO     | PanDA job id: 6668442774
[2025-06-05 17:10:08] 2025-06-05 21:09:48,866 | INFO     | task id: 44871837
[2025-06-05 17:10:08] 2025-06-05 21:09:48,866 | INFO     | errors: (none)
[2025-06-05 17:10:08] 2025-06-05 21:09:48,866 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 17:10:08] 2025-06-05 21:09:48,866 | INFO     | pilot state: finished 
[2025-06-05 17:10:08] 2025-06-05 21:09:48,866 | INFO     | transexitcode: 0
[2025-06-05 17:10:08] 2025-06-05 21:09:48,866 | INFO     | exeerrorcode: 0
[2025-06-05 17:10:08] 2025-06-05 21:09:48,866 | INFO     | exeerrordiag: 
[2025-06-05 17:10:08] 2025-06-05 21:09:48,866 | INFO     | exitcode: 0
[2025-06-05 17:10:08] 2025-06-05 21:09:48,866 | INFO     | exitmsg: OK
[2025-06-05 17:10:08] 2025-06-05 21:09:48,866 | INFO     | cpuconsumptiontime: 50605 s
[2025-06-05 17:10:08] 2025-06-05 21:09:48,866 | INFO     | nevents: 400
[2025-06-05 17:10:08] 2025-06-05 21:09:48,867 | INFO     | neventsw: 0
[2025-06-05 17:10:08] 2025-06-05 21:09:48,867 | INFO     | pid: 834912
[2025-06-05 17:10:08] 2025-06-05 21:09:48,867 | INFO     | pgrp: 834912
[2025-06-05 17:10:08] 2025-06-05 21:09:48,867 | INFO     | corecount: 12
[2025-06-05 17:10:08] 2025-06-05 21:09:48,867 | INFO     | event service: False
[2025-06-05 17:10:08] 2025-06-05 21:09:48,867 | INFO     | sizes: {0: 2397221, 1: 2397420, 12: 2397420, 17: 2397654, 23: 2397682, 5968: 2424425, 5969: 2433366, 5971: 2433450, 5976: 2433620}
[2025-06-05 17:10:08] 2025-06-05 21:09:48,867 | INFO     | --------------------------------------------------
[2025-06-05 17:10:08] 2025-06-05 21:09:48,867 | INFO     | 
[2025-06-05 17:10:08] 2025-06-05 21:09:48,867 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 17:10:08] 2025-06-05 21:09:48,887 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 17:10:08] 2025-06-05 21:09:48,888 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 17:10:08] 2025-06-05 21:09:48,888 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 17:10:08] 2025-06-05 21:09:48,888 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 17:10:08] 2025-06-05 21:09:48,888 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 17:10:08] 2025-06-05 21:09:48,888 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 17:10:08] 2025-06-05 21:09:48,888 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 17:10:08] 2025-06-05 21:09:48,888 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 17:10:08] 2025-06-05 21:09:48,888 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 17:10:08] 2025-06-05 21:09:48,888 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 17:10:08] 2025-06-05 21:09:48,888 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 17:10:08] 2025-06-05 21:09:48,889 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 17:10:08] 2025-06-05 21:09:48,889 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 17:10:08] 2025-06-05 21:09:48,889 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 17:10:08] 2025-06-05 21:09:48,889 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 17:10:08] 2025-06-05 21:09:48,889 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 17:10:08] 2025-06-05 21:09:48,889 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 17:10:08] 2025-06-05 21:09:48,889 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 17:10:08] 2025-06-05 21:09:48,889 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 17:10:08] 2025-06-05 21:09:48,889 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 17:10:08] 2025-06-05 21:09:48,889 | INFO     | job 6668442774 has completed (purged errors)
[2025-06-05 17:10:08] 2025-06-05 21:09:48,889 | INFO     | overall cleanup function is called
[2025-06-05 17:10:08] 2025-06-05 21:09:49,897 | INFO     | --- collectZombieJob: --- 10, [834912]
[2025-06-05 17:10:08] 2025-06-05 21:09:49,897 | INFO     | zombie collector waiting for pid 834912
[2025-06-05 17:10:08] 2025-06-05 21:09:49,897 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 17:10:08] 2025-06-05 21:09:49,897 | INFO     | collected zombie processes
[2025-06-05 17:10:08] 2025-06-05 21:09:49,897 | INFO     | will attempt to kill all subprocesses of pid=834912
[2025-06-05 17:10:08] 2025-06-05 21:09:50,152 | INFO     | process IDs to be killed: [834912] (in reverse order)
[2025-06-05 17:10:08] 2025-06-05 21:09:50,242 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 17:10:08] 2025-06-05 21:09:50,242 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 17:10:08] 2025-06-05 21:09:50,253 | INFO     | did not find any defunct processes belonging to 834912
[2025-06-05 17:10:08] 2025-06-05 21:09:50,265 | INFO     | did not find any defunct processes belonging to 834912
[2025-06-05 17:10:08] 2025-06-05 21:09:50,266 | INFO     | ready for new job
[2025-06-05 17:10:08] 2025-06-05 21:09:50,266 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 17:10:08] 2025-06-05 21:09:50,268 | INFO     | **************************************
[2025-06-05 17:10:08] 2025-06-05 21:09:50,268 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 17:10:08] 2025-06-05 21:09:50,268 | INFO     | **************************************
[2025-06-05 17:10:08] 2025-06-05 21:09:50,268 | INFO     | 
[2025-06-05 17:10:08] 2025-06-05 21:09:50,285 | INFO     | architecture information:
[2025-06-05 17:10:08] 2025-06-05 21:09:50,285 | INFO     | executing command: cat /etc/os-release
[2025-06-05 17:10:08] 2025-06-05 21:09:50,299 | INFO     | cat /etc/os-release:
[2025-06-05 17:10:08] NAME="CentOS Linux"
[2025-06-05 17:10:08] VERSION="7 (Core)"
[2025-06-05 17:10:08] ID="centos"
[2025-06-05 17:10:08] ID_LIKE="rhel fedora"
[2025-06-05 17:10:08] VERSION_ID="7"
[2025-06-05 17:10:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 17:10:08] ANSI_COLOR="0;31"
[2025-06-05 17:10:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 17:10:08] HOME_URL="https://www.centos.org/"
[2025-06-05 17:10:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 17:10:08] 
[2025-06-05 17:10:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 17:10:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 17:10:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 17:10:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 17:10:08] 
[2025-06-05 17:10:08] 2025-06-05 21:09:50,300 | INFO     | **************************************
[2025-06-05 17:10:08] 2025-06-05 21:09:50,803 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 17:10:08] 2025-06-05 21:09:50,821 | INFO     | sufficient remaining disk space (76481036288 B)
[2025-06-05 17:10:08] 2025-06-05 21:09:50,822 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 17:10:08] 2025-06-05 21:09:50,822 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 17:10:08] 2025-06-05 21:09:50,822 | INFO     | update_server=False
[2025-06-05 17:10:08] 2025-06-05 21:09:50,823 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 17:10:08] 2025-06-05 21:09:50,823 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 17:10:08] 2025-06-05 21:09:50,823 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 17:10:08] 2025-06-05 21:09:50,840 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 17:10:08] 2025-06-05 21:09:50,840 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 17:10:08] 2025-06-05 21:09:50,840 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 17:10:08] 2025-06-05 21:09:51,108 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-05 17:10:08] 2025-06-05 21:09:51,108 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-05 17:10:08] 2025-06-05 21:09:51,108 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 17:10:08] 2025-06-05 21:09:51,108 | INFO     | will abort loop
[2025-06-05 17:10:08] 2025-06-05 21:09:51,457 | INFO     | all job control threads have been joined
[2025-06-05 17:10:08] 2025-06-05 21:09:51,551 | INFO     | all data control threads have been joined
[2025-06-05 17:10:08] 2025-06-05 21:09:51,829 | INFO     | [job] retrieve thread has finished
[2025-06-05 17:10:08] 2025-06-05 21:09:51,963 | INFO     | [data] copytool_in thread has finished
[2025-06-05 17:10:08] 2025-06-05 21:09:52,114 | INFO     | [job] job monitor thread has finished
[2025-06-05 17:10:08] 2025-06-05 21:09:52,297 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 17:10:08] 2025-06-05 21:09:52,308 | INFO     | all payload control threads have been joined
[2025-06-05 17:10:08] 2025-06-05 21:09:52,434 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 17:10:08] 2025-06-05 21:09:52,462 | INFO     | [job] control thread has finished
[2025-06-05 17:10:08] 2025-06-05 21:09:52,478 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 17:10:08] 2025-06-05 21:09:52,556 | INFO     | [data] control thread has finished
[2025-06-05 17:10:08] 2025-06-05 21:09:52,625 | INFO     | [payload] failed_post thread has finished
[2025-06-05 17:10:08] 2025-06-05 21:09:52,831 | INFO     | [data] copytool_out thread has finished
[2025-06-05 17:10:08] 2025-06-05 21:09:53,218 | INFO     | [job] validate thread has finished
[2025-06-05 17:10:08] 2025-06-05 21:09:53,247 | INFO     | [payload] validate_post thread has finished
[2025-06-05 17:10:08] 2025-06-05 21:09:53,313 | INFO     | [payload] control thread has finished
[2025-06-05 17:10:08] 2025-06-05 21:09:53,475 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 17:10:08] 2025-06-05 21:09:54,480 | INFO     | [job] queue monitor thread has finished
[2025-06-05 17:10:08] 2025-06-05 21:09:54,830 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 17:10:08] 2025-06-05 21:10:01,686 | INFO     | job.realtimelogging is not enabled
[2025-06-05 17:10:08] 2025-06-05 21:10:02,691 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 17:10:08] 2025-06-05 21:10:02,996 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140226188396352)>', '<ExcThread(monitor, started 140225690978048)>']
[2025-06-05 17:10:08] 2025-06-05 21:10:03,907 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 17:10:08] 2025-06-05 21:10:03,908 | INFO     | [monitor] control thread has ended
[2025-06-05 17:10:08] 2025-06-05 21:10:08,021 | INFO     | all workflow threads have been joined
[2025-06-05 17:10:08] 2025-06-05 21:10:08,022 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 17:10:08] 2025-06-05 21:10:08,022 | INFO     | traces error code: 0
[2025-06-05 17:10:08] 2025-06-05 21:10:08,022 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 17:10:08] 2025-06-05 21:10:08,173 [wrapper] ==== pilot stdout END ====
[2025-06-05 17:10:08] 2025-06-05 21:10:08,177 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 17:10:08] 2025-06-05 21:10:08,181 [wrapper] pilotpid: 827545
[2025-06-05 17:10:08] 2025-06-05 21:10:08,185 [wrapper] Pilot exit status: 0
[2025-06-05 17:10:08] 2025-06-05 21:10:08,201 [wrapper] pandaids: 6668442774
[2025-06-05 17:10:08] 2025-06-05 21:10:08,266 [wrapper] cleanup supervisor_pilot 1109895 827546
[2025-06-05 17:10:08] 2025-06-05 21:10:08,270 [wrapper] Test setup, not cleaning
[2025-06-05 17:10:08] 2025-06-05 21:10:08,273 [wrapper] apfmon messages muted
[2025-06-05 17:10:08] 2025-06-05 21:10:08,276 [wrapper] ==== wrapper stdout END ====
[2025-06-05 17:10:08] 2025-06-05 21:10:08,278 [wrapper] ==== wrapper stderr END ====
[2025-06-05 17:10:08]  *** Error codes and diagnostics ***
[2025-06-05 17:10:08]     "exeErrorCode": 0,
[2025-06-05 17:10:08]     "exeErrorDiag": "",
[2025-06-05 17:10:08]     "pilotErrorCode": 0,
[2025-06-05 17:10:08]     "pilotErrorDiag": "",
[2025-06-05 17:10:08]  *** Listing of results directory ***
[2025-06-05 17:10:08] total 415352
[2025-06-05 17:10:08] -rw-r--r--. 1 boincer umatlas    495897 May 28 09:01 pilot3.tar.gz
[2025-06-05 17:10:08] -rw-r--r--. 1 boincer umatlas      5111 May 28 09:07 queuedata.json
[2025-06-05 17:10:08] -rwx------. 1 boincer umatlas     37140 May 28 09:08 runpilot2-wrapper.sh
[2025-06-05 17:10:08] -rw-r--r--. 1 boincer umatlas       100 Jun  5 15:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 17:10:08] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  5 15:29 run_atlas
[2025-06-05 17:10:08] -rw-r--r--. 1 boincer umatlas       105 Jun  5 15:29 job.xml
[2025-06-05 17:10:08] -rw-r--r--. 2 boincer umatlas 224371493 Jun  5 15:29 EVNT.44871834._003305.pool.root.1
[2025-06-05 17:10:08] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 15:29 start_atlas.sh
[2025-06-05 17:10:08] drwxrwx--x. 2 boincer umatlas      4096 Jun  5 15:29 shared
[2025-06-05 17:10:08] -rw-r--r--. 2 boincer umatlas    508884 Jun  5 15:29 input.tar.gz
[2025-06-05 17:10:08] -rw-r--r--. 1 boincer umatlas         0 Jun  5 15:29 boinc_lockfile
[2025-06-05 17:10:08] -rw-r--r--. 1 boincer umatlas      2559 Jun  5 15:29 pandaJob.out
[2025-06-05 17:10:08] -rw-------. 1 boincer umatlas    987599 Jun  5 15:29 agis_schedconf.cvmfs.json
[2025-06-05 17:10:08] -rw-------. 1 boincer umatlas   1598969 Jun  5 15:29 agis_ddmendpoints.agis.ALL.json
[2025-06-05 17:10:08] drwx------. 4 boincer umatlas      4096 Jun  5 15:29 pilot3
[2025-06-05 17:10:08] -rw-r--r--. 1 boincer umatlas      6839 Jun  5 17:04 init_data.xml
[2025-06-05 17:10:08] -rw-------. 1 boincer umatlas 195245152 Jun  5 17:09 HITS.44871837._084696.pool.root.1
[2025-06-05 17:10:08] -rw-r--r--. 1 boincer umatlas       530 Jun  5 17:09 boinc_task_state.xml
[2025-06-05 17:10:08] -rw-------. 1 boincer umatlas      1041 Jun  5 17:09 memory_monitor_summary.json
[2025-06-05 17:10:08] -rw-------. 1 boincer umatlas    367704 Jun  5 17:09 log.44871837._084696.job.log.tgz.1
[2025-06-05 17:10:08] -rw-------. 1 boincer umatlas        95 Jun  5 17:09 pilot_heartbeat.json
[2025-06-05 17:10:08] -rw-------. 1 boincer umatlas      7722 Jun  5 17:09 heartbeat.json
[2025-06-05 17:10:08] -rw-r--r--. 1 boincer umatlas      8192 Jun  5 17:10 boinc_mmap_file
[2025-06-05 17:10:08] -rw-r--r--. 1 boincer umatlas        27 Jun  5 17:10 wrapper_checkpoint.txt
[2025-06-05 17:10:08] -rw-------. 1 boincer umatlas      4611 Jun  5 17:10 pilotlog.txt
[2025-06-05 17:10:08] -rw-------. 1 boincer umatlas    563213 Jun  5 17:10 log.44871837._084696.job.log.1
[2025-06-05 17:10:08] -rw-------. 1 boincer umatlas       357 Jun  5 17:10 output.list
[2025-06-05 17:10:08] -rw-r--r--. 1 boincer umatlas       620 Jun  5 17:10 runtime_log
[2025-06-05 17:10:08] -rw-------. 1 boincer umatlas    952320 Jun  5 17:10 result.tar.gz
[2025-06-05 17:10:08] -rw-r--r--. 1 boincer umatlas      8666 Jun  5 17:10 runtime_log.err
[2025-06-05 17:10:08] -rw-------. 1 boincer umatlas       654 Jun  5 17:10 KGLMDmqhVe7n9Rq4apOajLDm4fhM0noT9bVof3QYDmzWTKDmuhd32n.diag
[2025-06-05 17:10:08] -rw-r--r--. 1 boincer umatlas     22393 Jun  5 17:10 stderr.txt
[2025-06-05 17:10:08] HITS file was successfully produced:
[2025-06-05 17:10:08] -rw-------. 1 boincer umatlas 195245152 Jun  5 17:09 shared/HITS.pool.root.1
[2025-06-05 17:10:08]  *** Contents of shared directory: ***
[2025-06-05 17:10:08] total 411244
[2025-06-05 17:10:08] -rw-r--r--. 2 boincer umatlas 224371493 Jun  5 15:29 ATLAS.root_0
[2025-06-05 17:10:08] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 15:29 start_atlas.sh
[2025-06-05 17:10:08] -rw-r--r--. 2 boincer umatlas    508884 Jun  5 15:29 input.tar.gz
[2025-06-05 17:10:08] -rw-------. 1 boincer umatlas 195245152 Jun  5 17:09 HITS.pool.root.1
[2025-06-05 17:10:08] -rw-------. 1 boincer umatlas    952320 Jun  5 17:10 result.tar.gz
17:10:09 (823247): run_atlas exited; CPU time 50725.054048
17:10:09 (823247): called boinc_finish(0)

</stderr_txt>
]]>

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