Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:03:34 (32002): wrapper (7.7.26015): starting
04:03:34 (32002): wrapper: running run_atlas (--nthreads 8)
[2025-06-06 04:03:34] Arguments: --nthreads 8
[2025-06-06 04:03:34] Threads: 8
[2025-06-06 04:03:34] Checking for CVMFS
[2025-06-06 04:03:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 04:03:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 04:03:35] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 04:03:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 04:03:36] 2.11.2.0 28641 35478 92080 146838 2 158 21383709 25165824 3954 130560 0 19551916 99.825 20973142 2056 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-06 04:03:36] CVMFS is ok
[2025-06-06 04:03:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 04:03:36] Checking for apptainer binary...
[2025-06-06 04:03:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 04:03:36] Running /usr/bin/apptainer --version
[2025-06-06 04:03:37] apptainer version 1.3.2-1.el7
[2025-06-06 04:03:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 04:03:49] cg-vwn402.simple-grid.lan
[2025-06-06 04:03:49] apptainer works
[2025-06-06 04:03:49] Set ATHENA_PROC_NUMBER=8
[2025-06-06 04:03:49] Set ATHENA_CORE_NUMBER=8
[2025-06-06 04:03:49] Starting ATLAS job with PandaID=6668443596
[2025-06-06 04:03:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 09:35:59]  *** The last 200 lines of the pilot log: ***
[2025-06-06 09:35:59] 2025-06-06 07:17:15,901 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6668443596/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 09:35:59] 2025-06-06 07:17:15,902 | INFO     | extracted standard info from prmon json
[2025-06-06 09:35:59] 2025-06-06 07:17:15,902 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 09:35:59] 2025-06-06 07:17:15,902 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 09:35:59] 2025-06-06 07:17:15,903 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 09:35:59] 2025-06-06 07:17:15,903 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 09:35:59] 2025-06-06 07:17:15,919 | INFO     | fitting pss+swap vs Time
[2025-06-06 09:35:59] 2025-06-06 07:17:15,920 | INFO     | sum of square deviations: 8884603792.5
[2025-06-06 09:35:59] 2025-06-06 07:17:15,922 | INFO     | sum of deviations: 71563151193.00002
[2025-06-06 09:35:59] 2025-06-06 07:17:15,923 | INFO     | mean x: 1749184813.5
[2025-06-06 09:35:59] 2025-06-06 07:17:15,923 | INFO     | mean y: 2463033.6732026143
[2025-06-06 09:35:59] 2025-06-06 07:17:15,923 | INFO     | -- intersect: -14086761449.096556
[2025-06-06 09:35:59] 2025-06-06 07:17:15,923 | INFO     | intersect: -14086761449.096556
[2025-06-06 09:35:59] 2025-06-06 07:17:15,924 | INFO     | chi2: 2.490292939468041
[2025-06-06 09:35:59] 2025-06-06 07:17:15,924 | INFO     | sum of square deviations: 8456158550.0
[2025-06-06 09:35:59] 2025-06-06 07:17:15,928 | INFO     | sum of deviations: 91191076113.99997
[2025-06-06 09:35:59] 2025-06-06 07:17:15,942 | INFO     | mean x: 1749184661.0
[2025-06-06 09:35:59] 2025-06-06 07:17:15,943 | INFO     | mean y: 2469921.0132890367
[2025-06-06 09:35:59] 2025-06-06 07:17:15,943 | INFO     | -- intersect: -18860708981.739452
[2025-06-06 09:35:59] 2025-06-06 07:17:15,943 | INFO     | intersect: -18860708981.739452
[2025-06-06 09:35:59] 2025-06-06 07:17:15,943 | INFO     | chi2: 1.6527593184617542
[2025-06-06 09:35:59] 2025-06-06 07:17:15,944 | INFO     | current chi2=1.6527593184617542 (change=33.63193171905289 %)
[2025-06-06 09:35:59] 2025-06-06 07:17:15,944 | INFO     | sum of square deviations: 8041713570.0
[2025-06-06 09:35:59] 2025-06-06 07:17:15,947 | INFO     | sum of deviations: 89528358975.99998
[2025-06-06 09:35:59] 2025-06-06 07:17:15,948 | INFO     | mean x: 1749184508.5
[2025-06-06 09:35:59] 2025-06-06 07:17:15,948 | INFO     | mean y: 2469309.1486486485
[2025-06-06 09:35:59] 2025-06-06 07:17:15,948 | INFO     | -- intersect: -19471193515.20958
[2025-06-06 09:35:59] 2025-06-06 07:17:15,948 | INFO     | intersect: -19471193515.20958
[2025-06-06 09:35:59] 2025-06-06 07:17:15,949 | INFO     | chi2: 1.6519362004926368
[2025-06-06 09:35:59] 2025-06-06 07:17:15,949 | INFO     | current chi2=1.6519362004926368 (change=0.04980265183943837 %)
[2025-06-06 09:35:59] 2025-06-06 07:17:15,949 | INFO     | right removable region: 295
[2025-06-06 09:35:59] 2025-06-06 07:17:15,949 | INFO     | sum of square deviations: 8456158550.0
[2025-06-06 09:35:59] 2025-06-06 07:17:15,952 | INFO     | sum of deviations: 22575756081.999996
[2025-06-06 09:35:59] 2025-06-06 07:17:15,952 | INFO     | mean x: 1749184966.0
[2025-06-06 09:35:59] 2025-06-06 07:17:15,952 | INFO     | mean y: 2480350.5448504984
[2025-06-06 09:35:59] 2025-06-06 07:17:15,953 | INFO     | -- intersect: -4667391069.346805
[2025-06-06 09:35:59] 2025-06-06 07:17:15,953 | INFO     | intersect: -4667391069.346805
[2025-06-06 09:35:59] 2025-06-06 07:17:15,953 | INFO     | chi2: 1.0155545664089123
[2025-06-06 09:35:59] 2025-06-06 07:17:15,953 | INFO     | current chi2=1.0155545664089123 (change=59.219473728827744 %)
[2025-06-06 09:35:59] 2025-06-06 07:17:15,954 | INFO     | sum of square deviations: 8041713570.0
[2025-06-06 09:35:59] 2025-06-06 07:17:15,957 | INFO     | sum of deviations: 5644368277.5
[2025-06-06 09:35:59] 2025-06-06 07:17:15,957 | INFO     | mean x: 1749185118.5
[2025-06-06 09:35:59] 2025-06-06 07:17:15,957 | INFO     | mean y: 2486580.706081081
[2025-06-06 09:35:59] 2025-06-06 07:17:15,957 | INFO     | -- intersect: -1225242423.6156282
[2025-06-06 09:35:59] 2025-06-06 07:17:15,957 | INFO     | intersect: -1225242423.6156282
[2025-06-06 09:35:59] 2025-06-06 07:17:15,958 | INFO     | chi2: 0.9172672890858399
[2025-06-06 09:35:59] 2025-06-06 07:17:15,958 | INFO     | current chi2=0.9172672890858399 (change=9.678187718718515 %)
[2025-06-06 09:35:59] 2025-06-06 07:17:15,958 | INFO     | left removable region: 20
[2025-06-06 09:35:59] 2025-06-06 07:17:15,958 | INFO     | sum of square deviations: 6448679050.0
[2025-06-06 09:35:59] 2025-06-06 07:17:15,961 | INFO     | sum of deviations: 11831377488.0
[2025-06-06 09:35:59] 2025-06-06 07:17:15,961 | INFO     | mean x: 1749185088.0
[2025-06-06 09:35:59] 2025-06-06 07:17:15,961 | INFO     | mean y: 2499306.712727273
[2025-06-06 09:35:59] 2025-06-06 07:17:15,961 | INFO     | -- intersect: -3206726786.266501
[2025-06-06 09:35:59] 2025-06-06 07:17:15,961 | INFO     | intersect: -3206726786.266501
[2025-06-06 09:35:59] 2025-06-06 07:17:15,962 | INFO     | chi2: 0.002594432666227188
[2025-06-06 09:35:59] 2025-06-06 07:17:15,965 | INFO     | -- intersect: -3206726786.266501
[2025-06-06 09:35:59] 2025-06-06 07:17:15,965 | INFO     | current memory leak: 1.83 B/s (using 275 data points, chi2=0.00)
[2025-06-06 09:35:59] 2025-06-06 07:17:15,966 | INFO     | ..............................
[2025-06-06 09:35:59] 2025-06-06 07:17:15,967 | INFO     | . Timing measurements:
[2025-06-06 09:35:59] 2025-06-06 07:17:15,967 | INFO     | . get job = 0 s
[2025-06-06 09:35:59] 2025-06-06 07:17:15,967 | INFO     | . initial setup = 3 s
[2025-06-06 09:35:59] 2025-06-06 07:17:15,967 | INFO     | . payload setup = 14 s
[2025-06-06 09:35:59] 2025-06-06 07:17:15,967 | INFO     | . stage-in = 0 s
[2025-06-06 09:35:59] 2025-06-06 07:17:15,967 | INFO     | . payload execution = 18656 s
[2025-06-06 09:35:59] 2025-06-06 07:17:15,967 | INFO     | . stage-out = 3 s
[2025-06-06 09:35:59] 2025-06-06 07:17:15,967 | INFO     | . log creation = 1 s
[2025-06-06 09:35:59] 2025-06-06 07:17:15,967 | INFO     | ..............................
[2025-06-06 09:35:59] 2025-06-06 07:17:16,095 | INFO     | 
[2025-06-06 09:35:59] 2025-06-06 07:17:16,096 | INFO     | job summary report
[2025-06-06 09:35:59] 2025-06-06 07:17:16,096 | INFO     | --------------------------------------------------
[2025-06-06 09:35:59] 2025-06-06 07:17:16,096 | INFO     | PanDA job id: 6668443596
[2025-06-06 09:35:59] 2025-06-06 07:17:16,096 | INFO     | task id: 44871837
[2025-06-06 09:35:59] 2025-06-06 07:17:16,096 | INFO     | errors: (none)
[2025-06-06 09:35:59] 2025-06-06 07:17:16,096 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 09:35:59] 2025-06-06 07:17:16,096 | INFO     | pilot state: finished 
[2025-06-06 09:35:59] 2025-06-06 07:17:16,096 | INFO     | transexitcode: 0
[2025-06-06 09:35:59] 2025-06-06 07:17:16,096 | INFO     | exeerrorcode: 0
[2025-06-06 09:35:59] 2025-06-06 07:17:16,097 | INFO     | exeerrordiag: 
[2025-06-06 09:35:59] 2025-06-06 07:17:16,097 | INFO     | exitcode: 0
[2025-06-06 09:35:59] 2025-06-06 07:17:16,097 | INFO     | exitmsg: OK
[2025-06-06 09:35:59] 2025-06-06 07:17:16,097 | INFO     | cpuconsumptiontime: 71250 s
[2025-06-06 09:35:59] 2025-06-06 07:17:16,097 | INFO     | nevents: 400
[2025-06-06 09:35:59] 2025-06-06 07:17:16,097 | INFO     | neventsw: 0
[2025-06-06 09:35:59] 2025-06-06 07:17:16,097 | INFO     | pid: 14190
[2025-06-06 09:35:59] 2025-06-06 07:17:16,097 | INFO     | pgrp: 14190
[2025-06-06 09:35:59] 2025-06-06 07:17:16,097 | INFO     | corecount: 8
[2025-06-06 09:35:59] 2025-06-06 07:17:16,097 | INFO     | event service: False
[2025-06-06 09:35:59] 2025-06-06 07:17:16,097 | INFO     | sizes: {0: 2397392, 1: 2397420, 8: 2397626, 12: 2397654, 18675: 2429361, 18680: 2438302, 18682: 2438486, 18760: 2438656}
[2025-06-06 09:35:59] 2025-06-06 07:17:16,098 | INFO     | --------------------------------------------------
[2025-06-06 09:35:59] 2025-06-06 07:17:16,098 | INFO     | 
[2025-06-06 09:35:59] 2025-06-06 07:17:16,098 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-06-06 09:35:59] 2025-06-06 07:17:16,335 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 09:35:59] 2025-06-06 07:17:16,336 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 09:35:59] 2025-06-06 07:17:16,336 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 09:35:59] 2025-06-06 07:17:16,336 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 09:35:59] 2025-06-06 07:17:16,336 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 09:35:59] 2025-06-06 07:17:16,336 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 09:35:59] 2025-06-06 07:17:16,336 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 09:35:59] 2025-06-06 07:17:16,336 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 09:35:59] 2025-06-06 07:17:16,337 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 09:35:59] 2025-06-06 07:17:16,337 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 09:35:59] 2025-06-06 07:17:16,337 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 09:35:59] 2025-06-06 07:17:16,337 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 09:35:59] 2025-06-06 07:17:16,337 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 09:35:59] 2025-06-06 07:17:16,337 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 09:35:59] 2025-06-06 07:17:16,337 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 09:35:59] 2025-06-06 07:17:16,337 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 09:35:59] 2025-06-06 07:17:16,337 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 09:35:59] 2025-06-06 07:17:16,337 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 09:35:59] 2025-06-06 07:17:16,337 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 09:35:59] 2025-06-06 07:17:16,338 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 09:35:59] 2025-06-06 07:17:16,338 | INFO     | job 6668443596 has completed (purged errors)
[2025-06-06 09:35:59] 2025-06-06 07:17:16,338 | INFO     | overall cleanup function is called
[2025-06-06 09:35:59] 2025-06-06 07:17:17,347 | INFO     | --- collectZombieJob: --- 10, [14190]
[2025-06-06 09:35:59] 2025-06-06 07:17:17,347 | INFO     | zombie collector waiting for pid 14190
[2025-06-06 09:35:59] 2025-06-06 07:17:17,347 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 09:35:59] 2025-06-06 07:17:17,348 | INFO     | collected zombie processes
[2025-06-06 09:35:59] 2025-06-06 07:17:17,348 | INFO     | will attempt to kill all subprocesses of pid=14190
[2025-06-06 09:35:59] 2025-06-06 07:17:17,453 | INFO     | process IDs to be killed: [14190] (in reverse order)
[2025-06-06 09:35:59] 2025-06-06 07:17:18,467 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 09:35:59] 2025-06-06 07:17:18,468 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 09:35:59] 2025-06-06 07:17:18,471 | INFO     | did not find any defunct processes belonging to 14190
[2025-06-06 09:35:59] 2025-06-06 07:17:18,478 | INFO     | did not find any defunct processes belonging to 14190
[2025-06-06 09:35:59] 2025-06-06 07:17:18,479 | INFO     | ready for new job
[2025-06-06 09:35:59] 2025-06-06 07:17:18,479 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 09:35:59] 2025-06-06 07:17:18,481 | INFO     | **************************************
[2025-06-06 09:35:59] 2025-06-06 07:17:18,481 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 09:35:59] 2025-06-06 07:17:18,481 | INFO     | **************************************
[2025-06-06 09:35:59] 2025-06-06 07:17:18,481 | INFO     | 
[2025-06-06 09:35:59] 2025-06-06 07:17:18,482 | INFO     | pilot is running in a VM
[2025-06-06 09:35:59] 2025-06-06 07:17:18,482 | INFO     | architecture information:
[2025-06-06 09:35:59] 2025-06-06 07:17:18,497 | INFO     | executing command: cat /etc/os-release
[2025-06-06 09:35:59] 2025-06-06 07:17:18,764 | INFO     | cat /etc/os-release:
[2025-06-06 09:35:59] NAME="CentOS Linux"
[2025-06-06 09:35:59] VERSION="7 (Core)"
[2025-06-06 09:35:59] ID="centos"
[2025-06-06 09:35:59] ID_LIKE="rhel fedora"
[2025-06-06 09:35:59] VERSION_ID="7"
[2025-06-06 09:35:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 09:35:59] ANSI_COLOR="0;31"
[2025-06-06 09:35:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 09:35:59] HOME_URL="https://www.centos.org/"
[2025-06-06 09:35:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 09:35:59] 
[2025-06-06 09:35:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 09:35:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 09:35:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 09:35:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 09:35:59] 
[2025-06-06 09:35:59] 2025-06-06 07:17:18,765 | INFO     | **************************************
[2025-06-06 09:35:59] 2025-06-06 07:17:19,268 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-06-06 09:35:59] 2025-06-06 07:17:19,385 | INFO     | sufficient remaining disk space (496513318912 B)
[2025-06-06 09:35:59] 2025-06-06 07:17:19,385 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 09:35:59] 2025-06-06 07:17:19,385 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 09:35:59] 2025-06-06 07:17:19,385 | INFO     | update_server=False
[2025-06-06 09:35:59] 2025-06-06 07:17:19,385 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 09:35:59] 2025-06-06 07:17:19,388 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 09:35:59] 2025-06-06 07:17:19,388 | INFO     | aborting loop
[2025-06-06 09:35:59] 2025-06-06 07:17:19,391 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 09:35:59] 2025-06-06 07:17:19,498 | INFO     | all job control threads have been joined
[2025-06-06 09:35:59] 2025-06-06 07:17:19,942 | INFO     | all payload control threads have been joined
[2025-06-06 09:35:59] 2025-06-06 07:17:20,048 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 09:35:59] 2025-06-06 07:17:20,137 | INFO     | all data control threads have been joined
[2025-06-06 09:35:59] 2025-06-06 07:17:20,287 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 09:35:59] 2025-06-06 07:17:20,287 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 09:35:59] 2025-06-06 07:17:20,288 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 09:35:59] 2025-06-06 07:17:20,391 | INFO     | [job] retrieve thread has finished
[2025-06-06 09:35:59] 2025-06-06 07:17:20,394 | INFO     | [job] job monitor thread has finished
[2025-06-06 09:35:59] 2025-06-06 07:17:20,504 | INFO     | [job] control thread has finished
[2025-06-06 09:35:59] 2025-06-06 07:17:20,948 | INFO     | [payload] control thread has finished
[2025-06-06 09:35:59] 2025-06-06 07:17:21,110 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 09:35:59] 2025-06-06 07:17:21,143 | INFO     | [data] control thread has finished
[2025-06-06 09:35:59] 2025-06-06 07:17:21,398 | INFO     | [data] copytool_out thread has finished
[2025-06-06 09:35:59] 2025-06-06 07:17:21,544 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 09:35:59] 2025-06-06 07:17:21,566 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 09:35:59] 2025-06-06 07:17:21,579 | INFO     | [payload] validate_post thread has finished
[2025-06-06 09:35:59] 2025-06-06 07:17:21,596 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 09:35:59] 2025-06-06 07:17:21,682 | INFO     | [data] copytool_in thread has finished
[2025-06-06 09:35:59] 2025-06-06 07:17:21,732 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 09:35:59] 2025-06-06 07:17:21,785 | INFO     | [payload] failed_post thread has finished
[2025-06-06 09:35:59] 2025-06-06 07:17:21,818 | INFO     | [job] validate thread has finished
[2025-06-06 09:35:59] 2025-06-06 07:17:22,116 | INFO     | [job] queue monitor thread has finished
[2025-06-06 09:35:59] 2025-06-06 07:17:24,057 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 09:35:59] 2025-06-06 07:17:26,055 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139819528017728)>', '<ExcThread(monitor, started 139818927367936)>']
[2025-06-06 09:35:59] 2025-06-06 07:17:26,322 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 09:35:59] 2025-06-06 07:17:26,322 | INFO     | [monitor] control thread has ended
[2025-06-06 09:35:59] 2025-06-06 07:17:31,081 | INFO     | all workflow threads have been joined
[2025-06-06 09:35:59] 2025-06-06 07:17:31,081 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 09:35:59] 2025-06-06 07:17:31,082 | INFO     | traces error code: 0
[2025-06-06 09:35:59] 2025-06-06 07:17:31,082 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 09:35:59] 2025-06-06 07:17:31,400 [wrapper] ==== pilot stdout END ====
[2025-06-06 09:35:59] 2025-06-06 07:17:31,474 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 09:35:59] 2025-06-06 07:17:31,535 [wrapper] pilotpid: 6795
[2025-06-06 09:35:59] 2025-06-06 07:17:31,634 [wrapper] Pilot exit status: 0
[2025-06-06 09:35:59] 2025-06-06 07:17:32,164 [wrapper] pandaids: 6668443596
[2025-06-06 09:35:59] 2025-06-06 07:17:33,022 [wrapper] cleanup supervisor_pilot  8285 6796
[2025-06-06 09:35:59] 2025-06-06 07:17:33,119 [wrapper] Test setup, not cleaning
[2025-06-06 09:35:59] 2025-06-06 07:17:33,168 [wrapper] apfmon messages muted
[2025-06-06 09:35:59] 2025-06-06 07:17:33,286 [wrapper] ==== wrapper stdout END ====
[2025-06-06 09:35:59] 2025-06-06 07:17:33,365 [wrapper] ==== wrapper stderr END ====
[2025-06-06 09:35:59]  *** Error codes and diagnostics ***
[2025-06-06 09:35:59]     "exeErrorCode": 0,
[2025-06-06 09:35:59]     "exeErrorDiag": "",
[2025-06-06 09:35:59]     "pilotErrorCode": 0,
[2025-06-06 09:35:59]     "pilotErrorDiag": "",
[2025-06-06 09:35:59]  *** Listing of results directory ***
[2025-06-06 09:35:59] total 424028
[2025-06-06 09:35:59] -rw-r--r--. 1 boinc boinc      5111 May 28 15:15 queuedata.json
[2025-06-06 09:35:59] -rw-r--r--. 1 boinc boinc    495897 May 28 15:15 pilot3.tar.gz
[2025-06-06 09:35:59] -rwx------. 1 boinc boinc     37140 May 28 15:16 runpilot2-wrapper.sh
[2025-06-06 09:35:59] -rw-r--r--. 1 boinc boinc       100 Jun  6 04:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 09:35:59] -rwxr-xr-x. 1 boinc boinc      7986 Jun  6 04:03 run_atlas
[2025-06-06 09:35:59] -rw-r--r--. 1 boinc boinc       105 Jun  6 04:03 job.xml
[2025-06-06 09:35:59] -rw-r--r--. 2 boinc boinc 225289500 Jun  6 04:03 EVNT.44871834._003314.pool.root.1
[2025-06-06 09:35:59] -rw-r--r--. 2 boinc boinc     15093 Jun  6 04:03 start_atlas.sh
[2025-06-06 09:35:59] drwxrwx--x. 2 boinc boinc        68 Jun  6 04:03 shared
[2025-06-06 09:35:59] -rw-r--r--. 2 boinc boinc    508879 Jun  6 04:03 input.tar.gz
[2025-06-06 09:35:59] -rw-r--r--. 1 boinc boinc      6390 Jun  6 04:03 init_data.xml
[2025-06-06 09:35:59] -rw-r--r--. 1 boinc boinc         0 Jun  6 04:03 boinc_lockfile
[2025-06-06 09:35:59] -rw-r--r--. 1 boinc boinc      2559 Jun  6 04:03 pandaJob.out
[2025-06-06 09:35:59] -rw-------. 1 boinc boinc    987721 Jun  6 04:04 agis_schedconf.cvmfs.json
[2025-06-06 09:35:59] drwx------. 4 boinc boinc      4096 Jun  6 04:04 pilot3
[2025-06-06 09:35:59] -rw-------. 1 boinc boinc 200973746 Jun  6 09:14 HITS.44871837._084939.pool.root.1
[2025-06-06 09:35:59] -rw-r--r--. 1 boinc boinc       531 Jun  6 09:14 boinc_task_state.xml
[2025-06-06 09:35:59] -rw-------. 1 boinc boinc      1017 Jun  6 09:15 memory_monitor_summary.json
[2025-06-06 09:35:59] -rw-------. 1 boinc boinc   1598969 Jun  6 09:15 agis_ddmendpoints.agis.ALL.json
[2025-06-06 09:35:59] -rw-------. 1 boinc boinc    438974 Jun  6 09:15 log.44871837._084939.job.log.tgz.1
[2025-06-06 09:35:59] -rw-------. 1 boinc boinc        95 Jun  6 09:16 pilot_heartbeat.json
[2025-06-06 09:35:59] -rw-------. 1 boinc boinc      7693 Jun  6 09:17 heartbeat.json
[2025-06-06 09:35:59] -rw-------. 1 boinc boinc      4416 Jun  6 09:17 pilotlog.txt
[2025-06-06 09:35:59] -rw-------. 1 boinc boinc   1621872 Jun  6 09:17 log.44871837._084939.job.log.1
[2025-06-06 09:35:59] -rw-------. 1 boinc boinc       357 Jun  6 09:17 output.list
[2025-06-06 09:35:59] -rw-r--r--. 1 boinc boinc       620 Jun  6 09:17 runtime_log
[2025-06-06 09:35:59] -rw-------. 1 boinc boinc   2078720 Jun  6 09:17 result.tar.gz
[2025-06-06 09:35:59] -rw-r--r--. 1 boinc boinc      8659 Jun  6 09:17 runtime_log.err
[2025-06-06 09:35:59] -rw-------. 1 boinc boinc       657 Jun  6 09:17 ksUKDmKpVe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmjEcKDmhGSqBo.diag
[2025-06-06 09:35:59] -rw-r--r--. 1 boinc boinc      8192 Jun  6 09:35 boinc_mmap_file
[2025-06-06 09:35:59] -rw-r--r--. 1 boinc boinc        28 Jun  6 09:35 wrapper_checkpoint.txt
[2025-06-06 09:35:59] -rw-r--r--. 1 boinc boinc     20493 Jun  6 09:35 stderr.txt
[2025-06-06 09:35:59] HITS file was successfully produced:
[2025-06-06 09:35:59] -rw-------. 1 boinc boinc 200973746 Jun  6 09:14 shared/HITS.pool.root.1
[2025-06-06 09:35:59]  *** Contents of shared directory: ***
[2025-06-06 09:35:59] total 418824
[2025-06-06 09:35:59] -rw-r--r--. 2 boinc boinc 225289500 Jun  6 04:03 ATLAS.root_0
[2025-06-06 09:35:59] -rw-r--r--. 2 boinc boinc     15093 Jun  6 04:03 start_atlas.sh
[2025-06-06 09:35:59] -rw-r--r--. 2 boinc boinc    508879 Jun  6 04:03 input.tar.gz
[2025-06-06 09:35:59] -rw-------. 1 boinc boinc 200973746 Jun  6 09:14 HITS.pool.root.1
[2025-06-06 09:35:59] -rw-------. 1 boinc boinc   2078720 Jun  6 09:17 result.tar.gz
09:36:01 (32002): run_atlas exited; CPU time 71486.490348
09:36:01 (32002): called boinc_finish(0)

</stderr_txt>
]]>

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