Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:21:59 (1259073): wrapper (7.7.26015): starting
15:21:59 (1259073): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 15:21:59] Arguments: --nthreads 8
[2025-06-05 15:21:59] Threads: 8
[2025-06-05 15:21:59] Checking for CVMFS
[2025-06-05 15:21:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 15:21:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 15:21:59] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 15:21:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 15:21:59] 2.12.6.0 274037 173776 1069620 146830 2 409 30255079 40960001 29730 130560 2 769394711 99.755 495657363 19219 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-05 15:21:59] CVMFS is ok
[2025-06-05 15:21:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 15:21:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 15:21:59] Further information can be found at the LHC@home message board.
[2025-06-05 15:21:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 15:21:59] Checking for apptainer binary...
[2025-06-05 15:21:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 15:21:59] Running /usr/bin/apptainer --version
[2025-06-05 15:21:59] apptainer version 1.4.1-1.el9
[2025-06-05 15:21:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 15:22:00] lc-12-9.aglt2.org
[2025-06-05 15:22:00] apptainer works
[2025-06-05 15:22:00] Set ATHENA_PROC_NUMBER=8
[2025-06-05 15:22:00] Set ATHENA_CORE_NUMBER=8
[2025-06-05 15:22:00] Starting ATLAS job with PandaID=6668531684
[2025-06-05 15:22:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
17:10:48 (2152662): wrapper (7.7.26015): starting
17:10:48 (2152662): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 17:10:48] Arguments: --nthreads 8
[2025-06-05 17:10:48] Threads: 8
[2025-06-05 17:10:48] This job has been restarted, cleaning up previous attempt
[2025-06-05 17:10:48] Checking for CVMFS
[2025-06-05 17:10:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 17:10:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 17:10:48] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 17:10:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 17:10:48] 2.12.6.0 274037 173885 1078752 146831 1 615 34068455 40960001 26705 130560 2 770133025 99.755 496778123 19223 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-05 17:10:48] CVMFS is ok
[2025-06-05 17:10:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 17:10:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 17:10:48] Further information can be found at the LHC@home message board.
[2025-06-05 17:10:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 17:10:48] Checking for apptainer binary...
[2025-06-05 17:10:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 17:10:48] Running /usr/bin/apptainer --version
[2025-06-05 17:10:48] apptainer version 1.4.1-1.el9
[2025-06-05 17:10:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 17:10:49] lc-12-9.aglt2.org
[2025-06-05 17:10:49] apptainer works
[2025-06-05 17:10:49] Set ATHENA_PROC_NUMBER=8
[2025-06-05 17:10:49] Set ATHENA_CORE_NUMBER=8
[2025-06-05 17:10:49] Starting ATLAS job with PandaID=6668531684
[2025-06-05 17:10:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 19:50:44]  *** The last 200 lines of the pilot log: ***
[2025-06-05 19:50:44] 2025-06-05 23:50:29,894 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 19:50:44] 2025-06-05 23:50:29,894 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 19:50:44] 2025-06-05 23:50:29,895 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 19:50:44] 2025-06-05 23:50:29,895 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 19:50:44] 2025-06-05 23:50:29,898 | INFO     | fitting pss+swap vs Time
[2025-06-05 19:50:44] 2025-06-05 23:50:29,899 | INFO     | sum of square deviations: 1177149330.9935925
[2025-06-05 19:50:44] 2025-06-05 23:50:29,899 | INFO     | sum of deviations: 21316181672.41667
[2025-06-05 19:50:44] 2025-06-05 23:50:29,900 | INFO     | mean x: 1749162631.5064104
[2025-06-05 19:50:44] 2025-06-05 23:50:29,900 | INFO     | mean y: 2159991.0833333335
[2025-06-05 19:50:44] 2025-06-05 23:50:29,900 | INFO     | -- intersect: -31672214233.23164
[2025-06-05 19:50:44] 2025-06-05 23:50:29,900 | INFO     | intersect: -31672214233.23164
[2025-06-05 19:50:44] 2025-06-05 23:50:29,900 | INFO     | chi2: 1.720861261440217
[2025-06-05 19:50:44] 2025-06-05 23:50:29,900 | INFO     | sum of square deviations: 1067547580.993379
[2025-06-05 19:50:44] 2025-06-05 23:50:29,901 | INFO     | sum of deviations: 23807865682.721863
[2025-06-05 19:50:44] 2025-06-05 23:50:29,901 | INFO     | mean x: 1749162479.0066226
[2025-06-05 19:50:44] 2025-06-05 23:50:29,901 | INFO     | mean y: 2163385.2781456956
[2025-06-05 19:50:44] 2025-06-05 23:50:29,902 | INFO     | -- intersect: -39006707131.47754
[2025-06-05 19:50:44] 2025-06-05 23:50:29,902 | INFO     | intersect: -39006707131.47754
[2025-06-05 19:50:44] 2025-06-05 23:50:29,902 | INFO     | chi2: 1.6778800883552691
[2025-06-05 19:50:44] 2025-06-05 23:50:29,902 | INFO     | current chi2=1.6778800883552691 (change=2.497654752770494 %)
[2025-06-05 19:50:44] 2025-06-05 23:50:29,902 | INFO     | right removable region: 150
[2025-06-05 19:50:44] 2025-06-05 23:50:29,902 | INFO     | sum of square deviations: 1067546970.993379
[2025-06-05 19:50:44] 2025-06-05 23:50:29,903 | INFO     | sum of deviations: 585328805.5894058
[2025-06-05 19:50:44] 2025-06-05 23:50:29,903 | INFO     | mean x: 1749162784.0066226
[2025-06-05 19:50:44] 2025-06-05 23:50:29,903 | INFO     | mean y: 2188447.4105960266
[2025-06-05 19:50:44] 2025-06-05 23:50:29,903 | INFO     | -- intersect: -956865712.2310467
[2025-06-05 19:50:44] 2025-06-05 23:50:29,904 | INFO     | intersect: -956865712.2310467
[2025-06-05 19:50:44] 2025-06-05 23:50:29,904 | INFO     | chi2: 0.31700368454658295
[2025-06-05 19:50:44] 2025-06-05 23:50:29,904 | INFO     | current chi2=0.31700368454658295 (change=81.57877734540452 %)
[2025-06-05 19:50:44] 2025-06-05 23:50:29,904 | INFO     | sum of square deviations: 964967998.4931524
[2025-06-05 19:50:44] 2025-06-05 23:50:29,905 | INFO     | sum of deviations: -7807566519.0137005
[2025-06-05 19:50:44] 2025-06-05 23:50:29,905 | INFO     | mean x: 1749162936.5068493
[2025-06-05 19:50:44] 2025-06-05 23:50:29,905 | INFO     | mean y: 2200796.51369863
[2025-06-05 19:50:44] 2025-06-05 23:50:29,905 | INFO     | -- intersect: 14154697045.815456
[2025-06-05 19:50:44] 2025-06-05 23:50:29,905 | INFO     | intersect: 14154697045.815456
[2025-06-05 19:50:44] 2025-06-05 23:50:29,906 | INFO     | chi2: 0.10739046105394343
[2025-06-05 19:50:44] 2025-06-05 23:50:29,906 | INFO     | current chi2=0.10739046105394343 (change=66.12327670337767 %)
[2025-06-05 19:50:44] 2025-06-05 23:50:29,906 | INFO     | sum of square deviations: 869179850.9929086
[2025-06-05 19:50:44] 2025-06-05 23:50:29,907 | INFO     | sum of deviations: -8114732838.517729
[2025-06-05 19:50:44] 2025-06-05 23:50:29,907 | INFO     | mean x: 1749163089.0070922
[2025-06-05 19:50:44] 2025-06-05 23:50:29,907 | INFO     | mean y: 2201280.5177304964
[2025-06-05 19:50:44] 2025-06-05 23:50:29,907 | INFO     | -- intersect: 16332528245.730326
[2025-06-05 19:50:44] 2025-06-05 23:50:29,907 | INFO     | intersect: 16332528245.730326
[2025-06-05 19:50:44] 2025-06-05 23:50:29,908 | INFO     | chi2: 0.10412450747835492
[2025-06-05 19:50:44] 2025-06-05 23:50:29,908 | INFO     | current chi2=0.10412450747835492 (change=3.0411952267790197 %)
[2025-06-05 19:50:44] 2025-06-05 23:50:29,908 | INFO     | left removable region: 30
[2025-06-05 19:50:44] 2025-06-05 23:50:29,908 | INFO     | sum of square deviations: 535786790.0
[2025-06-05 19:50:44] 2025-06-05 23:50:29,908 | INFO     | sum of deviations: -2960233620.0000005
[2025-06-05 19:50:44] 2025-06-05 23:50:29,908 | INFO     | mean x: 1749163363.5
[2025-06-05 19:50:44] 2025-06-05 23:50:29,909 | INFO     | mean y: 2202122.1666666665
[2025-06-05 19:50:44] 2025-06-05 23:50:29,909 | INFO     | -- intersect: 9666367592.735624
[2025-06-05 19:50:44] 2025-06-05 23:50:29,909 | INFO     | intersect: 9666367592.735624
[2025-06-05 19:50:44] 2025-06-05 23:50:29,909 | INFO     | chi2: 0.06704841885085805
[2025-06-05 19:50:44] 2025-06-05 23:50:29,909 | INFO     | -- intersect: 9666367592.735624
[2025-06-05 19:50:44] 2025-06-05 23:50:29,909 | INFO     | current memory leak: -5.53 B/s (using 120 data points, chi2=0.07)
[2025-06-05 19:50:44] 2025-06-05 23:50:29,910 | INFO     | ..............................
[2025-06-05 19:50:44] 2025-06-05 23:50:29,910 | INFO     | . Timing measurements:
[2025-06-05 19:50:44] 2025-06-05 23:50:29,910 | INFO     | . get job = 0 s
[2025-06-05 19:50:44] 2025-06-05 23:50:29,910 | INFO     | . initial setup = 1 s
[2025-06-05 19:50:44] 2025-06-05 23:50:29,910 | INFO     | . payload setup = 12 s
[2025-06-05 19:50:44] 2025-06-05 23:50:29,910 | INFO     | . stage-in = 0 s
[2025-06-05 19:50:44] 2025-06-05 23:50:29,910 | INFO     | . payload execution = 9519 s
[2025-06-05 19:50:44] 2025-06-05 23:50:29,910 | INFO     | . stage-out = 2 s
[2025-06-05 19:50:44] 2025-06-05 23:50:29,910 | INFO     | . log creation = 0 s
[2025-06-05 19:50:44] 2025-06-05 23:50:29,910 | INFO     | ..............................
[2025-06-05 19:50:44] 2025-06-05 23:50:30,031 | INFO     | 
[2025-06-05 19:50:44] 2025-06-05 23:50:30,031 | INFO     | job summary report
[2025-06-05 19:50:44] 2025-06-05 23:50:30,031 | INFO     | --------------------------------------------------
[2025-06-05 19:50:44] 2025-06-05 23:50:30,031 | INFO     | PanDA job id: 6668531684
[2025-06-05 19:50:44] 2025-06-05 23:50:30,031 | INFO     | task id: 44871837
[2025-06-05 19:50:44] 2025-06-05 23:50:30,031 | INFO     | errors: (none)
[2025-06-05 19:50:44] 2025-06-05 23:50:30,031 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 19:50:44] 2025-06-05 23:50:30,031 | INFO     | pilot state: finished 
[2025-06-05 19:50:44] 2025-06-05 23:50:30,031 | INFO     | transexitcode: 0
[2025-06-05 19:50:44] 2025-06-05 23:50:30,031 | INFO     | exeerrorcode: 0
[2025-06-05 19:50:44] 2025-06-05 23:50:30,032 | INFO     | exeerrordiag: 
[2025-06-05 19:50:44] 2025-06-05 23:50:30,032 | INFO     | exitcode: 0
[2025-06-05 19:50:44] 2025-06-05 23:50:30,032 | INFO     | exitmsg: OK
[2025-06-05 19:50:44] 2025-06-05 23:50:30,032 | INFO     | cpuconsumptiontime: 58079 s
[2025-06-05 19:50:44] 2025-06-05 23:50:30,032 | INFO     | nevents: 400
[2025-06-05 19:50:44] 2025-06-05 23:50:30,032 | INFO     | neventsw: 0
[2025-06-05 19:50:44] 2025-06-05 23:50:30,032 | INFO     | pid: 2163926
[2025-06-05 19:50:44] 2025-06-05 23:50:30,032 | INFO     | pgrp: 2163926
[2025-06-05 19:50:44] 2025-06-05 23:50:30,032 | INFO     | corecount: 8
[2025-06-05 19:50:44] 2025-06-05 23:50:30,032 | INFO     | event service: False
[2025-06-05 19:50:44] 2025-06-05 23:50:30,032 | INFO     | sizes: {0: 2397219, 1: 2397418, 2: 2397418, 7: 2397652, 12: 2397680, 9535: 2426050, 9536: 2426177, 9538: 2435174, 9542: 2435230, 9548: 2435400}
[2025-06-05 19:50:44] 2025-06-05 23:50:30,032 | INFO     | --------------------------------------------------
[2025-06-05 19:50:44] 2025-06-05 23:50:30,032 | INFO     | 
[2025-06-05 19:50:44] 2025-06-05 23:50:30,033 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 19:50:44] 2025-06-05 23:50:30,057 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 19:50:44] 2025-06-05 23:50:30,057 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 19:50:44] 2025-06-05 23:50:30,058 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 19:50:44] 2025-06-05 23:50:30,058 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 19:50:44] 2025-06-05 23:50:30,058 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 19:50:44] 2025-06-05 23:50:30,058 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 19:50:44] 2025-06-05 23:50:30,058 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 19:50:44] 2025-06-05 23:50:30,058 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 19:50:44] 2025-06-05 23:50:30,058 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 19:50:44] 2025-06-05 23:50:30,058 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 19:50:44] 2025-06-05 23:50:30,058 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 19:50:44] 2025-06-05 23:50:30,058 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 19:50:44] 2025-06-05 23:50:30,058 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 19:50:44] 2025-06-05 23:50:30,058 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 19:50:44] 2025-06-05 23:50:30,058 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 19:50:44] 2025-06-05 23:50:30,059 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 19:50:44] 2025-06-05 23:50:30,059 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 19:50:44] 2025-06-05 23:50:30,059 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 19:50:44] 2025-06-05 23:50:30,059 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 19:50:44] 2025-06-05 23:50:30,059 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 19:50:44] 2025-06-05 23:50:30,059 | INFO     | job 6668531684 has completed (purged errors)
[2025-06-05 19:50:44] 2025-06-05 23:50:30,059 | INFO     | overall cleanup function is called
[2025-06-05 19:50:44] 2025-06-05 23:50:31,067 | INFO     | --- collectZombieJob: --- 10, [2163926]
[2025-06-05 19:50:44] 2025-06-05 23:50:31,067 | INFO     | zombie collector waiting for pid 2163926
[2025-06-05 19:50:44] 2025-06-05 23:50:31,067 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 19:50:44] 2025-06-05 23:50:31,068 | INFO     | collected zombie processes
[2025-06-05 19:50:44] 2025-06-05 23:50:31,068 | INFO     | will attempt to kill all subprocesses of pid=2163926
[2025-06-05 19:50:44] 2025-06-05 23:50:31,603 | INFO     | process IDs to be killed: [2163926] (in reverse order)
[2025-06-05 19:50:44] 2025-06-05 23:50:31,818 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 19:50:44] 2025-06-05 23:50:31,818 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 19:50:44] 2025-06-05 23:50:31,838 | INFO     | did not find any defunct processes belonging to 2163926
[2025-06-05 19:50:44] 2025-06-05 23:50:31,859 | INFO     | did not find any defunct processes belonging to 2163926
[2025-06-05 19:50:44] 2025-06-05 23:50:31,859 | INFO     | ready for new job
[2025-06-05 19:50:44] 2025-06-05 23:50:31,860 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 19:50:44] 2025-06-05 23:50:31,861 | INFO     | **************************************
[2025-06-05 19:50:44] 2025-06-05 23:50:31,861 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 19:50:44] 2025-06-05 23:50:31,862 | INFO     | **************************************
[2025-06-05 19:50:44] 2025-06-05 23:50:31,862 | INFO     | 
[2025-06-05 19:50:44] 2025-06-05 23:50:31,867 | INFO     | architecture information:
[2025-06-05 19:50:44] 2025-06-05 23:50:31,867 | INFO     | executing command: cat /etc/os-release
[2025-06-05 19:50:44] 2025-06-05 23:50:31,886 | INFO     | cat /etc/os-release:
[2025-06-05 19:50:44] NAME="CentOS Linux"
[2025-06-05 19:50:44] VERSION="7 (Core)"
[2025-06-05 19:50:44] ID="centos"
[2025-06-05 19:50:44] ID_LIKE="rhel fedora"
[2025-06-05 19:50:44] VERSION_ID="7"
[2025-06-05 19:50:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 19:50:44] ANSI_COLOR="0;31"
[2025-06-05 19:50:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 19:50:44] HOME_URL="https://www.centos.org/"
[2025-06-05 19:50:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 19:50:44] 
[2025-06-05 19:50:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 19:50:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 19:50:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 19:50:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 19:50:44] 
[2025-06-05 19:50:44] 2025-06-05 23:50:31,887 | INFO     | **************************************
[2025-06-05 19:50:44] 2025-06-05 23:50:32,390 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 19:50:44] 2025-06-05 23:50:32,409 | INFO     | sufficient remaining disk space (420376215552 B)
[2025-06-05 19:50:44] 2025-06-05 23:50:32,409 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 19:50:44] 2025-06-05 23:50:32,409 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 19:50:44] 2025-06-05 23:50:32,410 | INFO     | update_server=False
[2025-06-05 19:50:44] 2025-06-05 23:50:32,410 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 19:50:44] 2025-06-05 23:50:32,410 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 19:50:44] 2025-06-05 23:50:32,410 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 19:50:44] 2025-06-05 23:50:32,410 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 19:50:44] 2025-06-05 23:50:32,410 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 19:50:44] 2025-06-05 23:50:32,533 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-05 19:50:44] 2025-06-05 23:50:32,533 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-05 19:50:44] 2025-06-05 23:50:32,533 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 19:50:44] 2025-06-05 23:50:32,533 | INFO     | will abort loop
[2025-06-05 19:50:44] 2025-06-05 23:50:32,616 | INFO     | all job control threads have been joined
[2025-06-05 19:50:44] 2025-06-05 23:50:33,136 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 19:50:44] 2025-06-05 23:50:33,218 | INFO     | all data control threads have been joined
[2025-06-05 19:50:44] 2025-06-05 23:50:33,413 | INFO     | all payload control threads have been joined
[2025-06-05 19:50:44] 2025-06-05 23:50:33,415 | INFO     | [job] retrieve thread has finished
[2025-06-05 19:50:44] 2025-06-05 23:50:33,436 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 19:50:44] 2025-06-05 23:50:33,477 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 19:50:44] 2025-06-05 23:50:33,539 | INFO     | [job] job monitor thread has finished
[2025-06-05 19:50:44] 2025-06-05 23:50:33,622 | INFO     | [job] control thread has finished
[2025-06-05 19:50:44] 2025-06-05 23:50:34,006 | INFO     | [data] copytool_in thread has finished
[2025-06-05 19:50:44] 2025-06-05 23:50:34,017 | INFO     | [job] validate thread has finished
[2025-06-05 19:50:44] 2025-06-05 23:50:34,086 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 19:50:44] 2025-06-05 23:50:34,171 | INFO     | [payload] failed_post thread has finished
[2025-06-05 19:50:44] 2025-06-05 23:50:34,172 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 19:50:44] 2025-06-05 23:50:34,223 | INFO     | [data] control thread has finished
[2025-06-05 19:50:44] 2025-06-05 23:50:34,243 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 19:50:44] 2025-06-05 23:50:34,418 | INFO     | [payload] control thread has finished
[2025-06-05 19:50:44] 2025-06-05 23:50:34,585 | INFO     | [payload] validate_post thread has finished
[2025-06-05 19:50:44] 2025-06-05 23:50:35,046 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 19:50:44] 2025-06-05 23:50:35,142 | INFO     | [data] copytool_out thread has finished
[2025-06-05 19:50:44] 2025-06-05 23:50:36,052 | INFO     | [job] queue monitor thread has finished
[2025-06-05 19:50:44] 2025-06-05 23:50:38,251 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 19:50:44] 2025-06-05 23:50:39,160 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140596005091136)>', '<ExcThread(monitor, started 140595284670208)>']
[2025-06-05 19:50:44] 2025-06-05 23:50:39,449 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 19:50:44] 2025-06-05 23:50:39,449 | INFO     | [monitor] control thread has ended
[2025-06-05 19:50:44] 2025-06-05 23:50:44,186 | INFO     | all workflow threads have been joined
[2025-06-05 19:50:44] 2025-06-05 23:50:44,186 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 19:50:44] 2025-06-05 23:50:44,187 | INFO     | traces error code: 0
[2025-06-05 19:50:44] 2025-06-05 23:50:44,187 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 19:50:44] 2025-06-05 23:50:44,390 [wrapper] ==== pilot stdout END ====
[2025-06-05 19:50:44] 2025-06-05 23:50:44,394 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 19:50:44] 2025-06-05 23:50:44,397 [wrapper] pilotpid: 2156607
[2025-06-05 19:50:44] 2025-06-05 23:50:44,402 [wrapper] Pilot exit status: 0
[2025-06-05 19:50:44] 2025-06-05 23:50:44,488 [wrapper] pandaids: 6668531684 6668531684
[2025-06-05 19:50:44] 2025-06-05 23:50:44,602 [wrapper] cleanup supervisor_pilot 3466447 2156608
[2025-06-05 19:50:44] 2025-06-05 23:50:44,607 [wrapper] Test setup, not cleaning
[2025-06-05 19:50:44] 2025-06-05 23:50:44,620 [wrapper] apfmon messages muted
[2025-06-05 19:50:44] 2025-06-05 23:50:44,630 [wrapper] ==== wrapper stdout END ====
[2025-06-05 19:50:44] 2025-06-05 23:50:44,641 [wrapper] ==== wrapper stderr END ====
[2025-06-05 19:50:44]  *** Error codes and diagnostics ***
[2025-06-05 19:50:44]     "exeErrorCode": 0,
[2025-06-05 19:50:44]     "exeErrorDiag": "",
[2025-06-05 19:50:44]     "pilotErrorCode": 0,
[2025-06-05 19:50:44]     "pilotErrorDiag": "",
[2025-06-05 19:50:44]  *** Listing of results directory ***
[2025-06-05 19:50:44] total 634008
[2025-06-05 19:50:44] drwx------. 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-06-05 19:50:44] -rw-r--r--. 1 boincer umatlas    495897 May 28 09:51 pilot3.tar.gz
[2025-06-05 19:50:44] -rwx------. 1 boincer umatlas     37140 May 28 10:07 runpilot2-wrapper.sh
[2025-06-05 19:50:44] -rw-r--r--. 1 boincer umatlas      5111 May 28 10:07 queuedata.json
[2025-06-05 19:50:44] -rw-r--r--. 1 boincer umatlas       100 Jun  5 15:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 19:50:44] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  5 15:21 run_atlas
[2025-06-05 19:50:44] -rw-r--r--. 1 boincer umatlas       105 Jun  5 15:21 job.xml
[2025-06-05 19:50:44] -rw-r--r--. 3 boincer umatlas 224422236 Jun  5 15:21 EVNT.44871834._003332.pool.root.1
[2025-06-05 19:50:44] -rw-r--r--. 3 boincer umatlas 224422236 Jun  5 15:21 ATLAS.root_0
[2025-06-05 19:50:44] -rw-r--r--. 2 boincer umatlas    508875 Jun  5 15:21 input.tar.gz
[2025-06-05 19:50:44] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 15:21 start_atlas.sh
[2025-06-05 19:50:44] drwxrwx--x. 2 boincer umatlas        68 Jun  5 15:21 shared
[2025-06-05 19:50:44] -rw-r--r--. 1 boincer umatlas         0 Jun  5 15:21 boinc_lockfile
[2025-06-05 19:50:44] -rw-r--r--. 1 boincer umatlas      2558 Jun  5 17:10 pandaJob.out
[2025-06-05 19:50:44] -rw-------. 1 boincer umatlas    987599 Jun  5 17:11 agis_schedconf.cvmfs.json
[2025-06-05 19:50:44] -rw-r--r--. 1 boincer umatlas      6880 Jun  5 19:49 init_data.xml
[2025-06-05 19:50:44] -rw-------. 1 boincer umatlas 194178390 Jun  5 19:49 HITS.44871837._085441.pool.root.1
[2025-06-05 19:50:44] -rw-r--r--. 1 boincer umatlas       530 Jun  5 19:49 boinc_task_state.xml
[2025-06-05 19:50:44] -rw-------. 1 boincer umatlas        96 Jun  5 19:49 pilot_heartbeat.json
[2025-06-05 19:50:44] -rw-------. 1 boincer umatlas      1039 Jun  5 19:50 memory_monitor_summary.json
[2025-06-05 19:50:44] -rw-------. 1 boincer umatlas   1598969 Jun  5 19:50 agis_ddmendpoints.agis.ALL.json
[2025-06-05 19:50:44] -rw-------. 1 boincer umatlas    339137 Jun  5 19:50 log.44871837._085441.job.log.tgz.1
[2025-06-05 19:50:44] -rw-------. 1 boincer umatlas      7717 Jun  5 19:50 heartbeat.json
[2025-06-05 19:50:44] -rw-r--r--. 1 boincer umatlas        28 Jun  5 19:50 wrapper_checkpoint.txt
[2025-06-05 19:50:44] -rw-r--r--. 1 boincer umatlas      8192 Jun  5 19:50 boinc_mmap_file
[2025-06-05 19:50:44] -rw-------. 1 boincer umatlas      4663 Jun  5 19:50 pilotlog.txt
[2025-06-05 19:50:44] -rw-------. 1 boincer umatlas    853293 Jun  5 19:50 log.44871837._085441.job.log.1
[2025-06-05 19:50:44] -rw-------. 1 boincer umatlas       357 Jun  5 19:50 output.list
[2025-06-05 19:50:44] -rw-r--r--. 1 boincer umatlas       620 Jun  5 19:50 runtime_log
[2025-06-05 19:50:44] -rw-------. 1 boincer umatlas   1208320 Jun  5 19:50 result.tar.gz
[2025-06-05 19:50:44] -rw-r--r--. 1 boincer umatlas      8739 Jun  5 19:50 runtime_log.err
[2025-06-05 19:50:44] -rw-------. 1 boincer umatlas       778 Jun  5 19:50 MT6NDmGcWe7n9Rq4apOajLDm4fhM0noT9bVof3QYDmCdTKDmbLH8cm.diag
[2025-06-05 19:50:44] -rw-r--r--. 1 boincer umatlas     23106 Jun  5 19:50 stderr.txt
[2025-06-05 19:50:44] HITS file was successfully produced:
[2025-06-05 19:50:44] -rw-------. 1 boincer umatlas 194178390 Jun  5 19:49 shared/HITS.pool.root.1
[2025-06-05 19:50:44]  *** Contents of shared directory: ***
[2025-06-05 19:50:44] total 410488
[2025-06-05 19:50:44] -rw-r--r--. 3 boincer umatlas 224422236 Jun  5 15:21 ATLAS.root_0
[2025-06-05 19:50:44] -rw-r--r--. 2 boincer umatlas    508875 Jun  5 15:21 input.tar.gz
[2025-06-05 19:50:44] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 15:21 start_atlas.sh
[2025-06-05 19:50:44] -rw-------. 1 boincer umatlas 194178390 Jun  5 19:49 HITS.pool.root.1
[2025-06-05 19:50:44] -rw-------. 1 boincer umatlas   1208320 Jun  5 19:50 result.tar.gz
19:50:46 (2152662): run_atlas exited; CPU time 58484.794026
19:50:46 (2152662): called boinc_finish(0)

</stderr_txt>
]]>

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