Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:18:37 (973): wrapper (7.7.26015): starting
15:18:37 (973): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 15:18:37] Arguments: --nthreads 8
[2025-06-05 15:18:37] Threads: 8
[2025-06-05 15:18:37] Checking for CVMFS
[2025-06-05 15:18:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 15:18:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 15:18:38] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 15:18:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 15:18:38] 2.11.2.0 5200 30633 301272 146830 1 270 14513360 18432001 21913 130560 0 158906414 99.531 142576963 42899 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-05 15:18:38] CVMFS is ok
[2025-06-05 15:18:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 15:18:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 15:18:38] Further information can be found at the LHC@home message board.
[2025-06-05 15:18:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 15:18:38] Checking for apptainer binary...
[2025-06-05 15:18:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 15:18:38] Running /usr/bin/apptainer --version
[2025-06-05 15:18:38] apptainer version 1.3.2-1.el7
[2025-06-05 15:18:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 15:18:42] c-212-5.aglt2.org
[2025-06-05 15:18:42] apptainer works
[2025-06-05 15:18:42] Set ATHENA_PROC_NUMBER=8
[2025-06-05 15:18:42] Set ATHENA_CORE_NUMBER=8
[2025-06-05 15:18:43] Starting ATLAS job with PandaID=6668234300
[2025-06-05 15:18:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 17:16:03]  *** The last 200 lines of the pilot log: ***
[2025-06-05 17:16:03] 2025-06-05 21:15:41,306 | INFO     | executing command: lscpu
[2025-06-05 17:16:03] 2025-06-05 21:15:41,349 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 17:16:03] 2025-06-05 21:15:41,682 | INFO     | monitor loop #516: job 0:6668234300 is in state 'finished'
[2025-06-05 17:16:03] 2025-06-05 21:15:41,682 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 17:16:03] 2025-06-05 21:15:44,186 | INFO     | monitor loop #517: job 0:6668234300 is in state 'finished'
[2025-06-05 17:16:03] 2025-06-05 21:15:44,186 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 17:16:03] 2025-06-05 21:15:45,120 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 17:16:03] 2025-06-05 21:15:45,120 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6668234300/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 17:16:03] 2025-06-05 21:15:45,121 | INFO     | extracted standard info from prmon json
[2025-06-05 17:16:03] 2025-06-05 21:15:45,121 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 17:16:03] 2025-06-05 21:15:45,121 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 17:16:03] 2025-06-05 21:15:45,122 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 17:16:03] 2025-06-05 21:15:45,122 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 17:16:03] 2025-06-05 21:15:45,123 | INFO     | fitting pss+swap vs Time
[2025-06-05 17:16:03] 2025-06-05 21:15:45,124 | INFO     | sum of square deviations: 459368400.4912284
[2025-06-05 17:16:03] 2025-06-05 21:15:45,124 | INFO     | sum of deviations: -5165663995.350876
[2025-06-05 17:16:03] 2025-06-05 21:15:45,124 | INFO     | mean x: 1749154634.508772
[2025-06-05 17:16:03] 2025-06-05 21:15:45,124 | INFO     | mean y: 2561255.350877193
[2025-06-05 17:16:03] 2025-06-05 21:15:45,124 | INFO     | -- intersect: 19672057694.637665
[2025-06-05 17:16:03] 2025-06-05 21:15:45,124 | INFO     | intersect: 19672057694.637665
[2025-06-05 17:16:03] 2025-06-05 21:15:45,125 | INFO     | chi2: 1.5728010588625134
[2025-06-05 17:16:03] 2025-06-05 21:15:45,125 | INFO     | sum of square deviations: 401535062.990825
[2025-06-05 17:16:03] 2025-06-05 21:15:45,125 | INFO     | sum of deviations: -4207863310.4311943
[2025-06-05 17:16:03] 2025-06-05 21:15:45,125 | INFO     | mean x: 1749154482.0091743
[2025-06-05 17:16:03] 2025-06-05 21:15:45,125 | INFO     | mean y: 2563782.4311926607
[2025-06-05 17:16:03] 2025-06-05 21:15:45,125 | INFO     | -- intersect: 18332726319.920143
[2025-06-05 17:16:03] 2025-06-05 21:15:45,125 | INFO     | intersect: 18332726319.920143
[2025-06-05 17:16:03] 2025-06-05 21:15:45,126 | INFO     | chi2: 1.57441098037408
[2025-06-05 17:16:03] 2025-06-05 21:15:45,126 | INFO     | current chi2=1.57441098037408 (change=-0.10236014926966758 %)
[2025-06-05 17:16:03] 2025-06-05 21:15:45,126 | INFO     | right removable region: 108
[2025-06-05 17:16:03] 2025-06-05 21:15:45,126 | INFO     | sum of square deviations: 401534452.990825
[2025-06-05 17:16:03] 2025-06-05 21:15:45,126 | INFO     | sum of deviations: -22131242618.57798
[2025-06-05 17:16:03] 2025-06-05 21:15:45,126 | INFO     | mean x: 1749154787.0091743
[2025-06-05 17:16:03] 2025-06-05 21:15:45,127 | INFO     | mean y: 2605036.5779816513
[2025-06-05 17:16:03] 2025-06-05 21:15:45,127 | INFO     | -- intersect: 96410195170.89622
[2025-06-05 17:16:03] 2025-06-05 21:15:45,127 | INFO     | intersect: 96410195170.89622
[2025-06-05 17:16:03] 2025-06-05 21:15:45,127 | INFO     | chi2: 0.05313034784041383
[2025-06-05 17:16:03] 2025-06-05 21:15:45,127 | INFO     | current chi2=0.05313034784041383 (change=96.62192827624118 %)
[2025-06-05 17:16:03] 2025-06-05 21:15:45,127 | INFO     | sum of square deviations: 348770367.9903839
[2025-06-05 17:16:03] 2025-06-05 21:15:45,127 | INFO     | sum of deviations: -19935301852.336536
[2025-06-05 17:16:03] 2025-06-05 21:15:45,127 | INFO     | mean x: 1749154939.5096154
[2025-06-05 17:16:03] 2025-06-05 21:15:45,128 | INFO     | mean y: 2598664.8365384615
[2025-06-05 17:16:03] 2025-06-05 21:15:45,128 | INFO     | -- intersect: 99982226826.91437
[2025-06-05 17:16:03] 2025-06-05 21:15:45,128 | INFO     | intersect: 99982226826.91437
[2025-06-05 17:16:03] 2025-06-05 21:15:45,128 | INFO     | chi2: 0.051639456736136145
[2025-06-05 17:16:03] 2025-06-05 21:15:45,128 | INFO     | current chi2=0.051639456736136145 (change=2.806100778326981 %)
[2025-06-05 17:16:03] 2025-06-05 21:15:45,128 | INFO     | left removable region: 20
[2025-06-05 17:16:03] 2025-06-05 21:15:45,128 | INFO     | sum of square deviations: 211286615.98863629
[2025-06-05 17:16:03] 2025-06-05 21:15:45,128 | INFO     | sum of deviations: -13397844819.13636
[2025-06-05 17:16:03] 2025-06-05 21:15:45,129 | INFO     | mean x: 1749155061.5113637
[2025-06-05 17:16:03] 2025-06-05 21:15:45,129 | INFO     | mean y: 2586143.1363636362
[2025-06-05 17:16:03] 2025-06-05 21:15:45,129 | INFO     | -- intersect: 110917837301.29102
[2025-06-05 17:16:03] 2025-06-05 21:15:45,129 | INFO     | intersect: 110917837301.29102
[2025-06-05 17:16:03] 2025-06-05 21:15:45,129 | INFO     | chi2: 0.04433398301712118
[2025-06-05 17:16:03] 2025-06-05 21:15:45,129 | INFO     | -- intersect: 110917837301.29102
[2025-06-05 17:16:03] 2025-06-05 21:15:45,129 | INFO     | current memory leak: -63.41 B/s (using 88 data points, chi2=0.04)
[2025-06-05 17:16:03] 2025-06-05 21:15:45,129 | INFO     | ..............................
[2025-06-05 17:16:03] 2025-06-05 21:15:45,129 | INFO     | . Timing measurements:
[2025-06-05 17:16:03] 2025-06-05 21:15:45,130 | INFO     | . get job = 0 s
[2025-06-05 17:16:03] 2025-06-05 21:15:45,130 | INFO     | . initial setup = 2 s
[2025-06-05 17:16:03] 2025-06-05 21:15:45,130 | INFO     | . payload setup = 12 s
[2025-06-05 17:16:03] 2025-06-05 21:15:45,130 | INFO     | . stage-in = 0 s
[2025-06-05 17:16:03] 2025-06-05 21:15:45,130 | INFO     | . payload execution = 6954 s
[2025-06-05 17:16:03] 2025-06-05 21:15:45,130 | INFO     | . stage-out = 0 s
[2025-06-05 17:16:03] 2025-06-05 21:15:45,130 | INFO     | . log creation = 0 s
[2025-06-05 17:16:03] 2025-06-05 21:15:45,130 | INFO     | ..............................
[2025-06-05 17:16:03] 2025-06-05 21:15:45,197 | INFO     | 
[2025-06-05 17:16:03] 2025-06-05 21:15:45,198 | INFO     | job summary report
[2025-06-05 17:16:03] 2025-06-05 21:15:45,198 | INFO     | --------------------------------------------------
[2025-06-05 17:16:03] 2025-06-05 21:15:45,198 | INFO     | PanDA job id: 6668234300
[2025-06-05 17:16:03] 2025-06-05 21:15:45,198 | INFO     | task id: 44871837
[2025-06-05 17:16:03] 2025-06-05 21:15:45,198 | INFO     | errors: (none)
[2025-06-05 17:16:03] 2025-06-05 21:15:45,198 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 17:16:03] 2025-06-05 21:15:45,198 | INFO     | pilot state: finished 
[2025-06-05 17:16:03] 2025-06-05 21:15:45,198 | INFO     | transexitcode: 0
[2025-06-05 17:16:03] 2025-06-05 21:15:45,198 | INFO     | exeerrorcode: 0
[2025-06-05 17:16:03] 2025-06-05 21:15:45,198 | INFO     | exeerrordiag: 
[2025-06-05 17:16:03] 2025-06-05 21:15:45,198 | INFO     | exitcode: 0
[2025-06-05 17:16:03] 2025-06-05 21:15:45,198 | INFO     | exitmsg: OK
[2025-06-05 17:16:03] 2025-06-05 21:15:45,198 | INFO     | cpuconsumptiontime: 43338 s
[2025-06-05 17:16:03] 2025-06-05 21:15:45,198 | INFO     | nevents: 400
[2025-06-05 17:16:03] 2025-06-05 21:15:45,198 | INFO     | neventsw: 0
[2025-06-05 17:16:03] 2025-06-05 21:15:45,198 | INFO     | pid: 16650
[2025-06-05 17:16:03] 2025-06-05 21:15:45,198 | INFO     | pgrp: 16650
[2025-06-05 17:16:03] 2025-06-05 21:15:45,198 | INFO     | corecount: 8
[2025-06-05 17:16:03] 2025-06-05 21:15:45,199 | INFO     | event service: False
[2025-06-05 17:16:03] 2025-06-05 21:15:45,199 | INFO     | sizes: {0: 2397392, 7: 2397598, 11: 2397626, 6970: 2424798, 6972: 2433739, 6973: 2433795, 6978: 2434093}
[2025-06-05 17:16:03] 2025-06-05 21:15:45,199 | INFO     | --------------------------------------------------
[2025-06-05 17:16:03] 2025-06-05 21:15:45,199 | INFO     | 
[2025-06-05 17:16:03] 2025-06-05 21:15:45,199 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 17:16:03] 2025-06-05 21:15:45,215 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 17:16:03] 2025-06-05 21:15:45,216 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 17:16:03] 2025-06-05 21:15:45,216 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 17:16:03] 2025-06-05 21:15:45,216 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 17:16:03] 2025-06-05 21:15:45,216 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 17:16:03] 2025-06-05 21:15:45,216 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 17:16:03] 2025-06-05 21:15:45,216 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 17:16:03] 2025-06-05 21:15:45,216 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 17:16:03] 2025-06-05 21:15:45,216 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 17:16:03] 2025-06-05 21:15:45,216 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 17:16:03] 2025-06-05 21:15:45,216 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 17:16:03] 2025-06-05 21:15:45,216 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 17:16:03] 2025-06-05 21:15:45,216 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 17:16:03] 2025-06-05 21:15:45,216 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 17:16:03] 2025-06-05 21:15:45,216 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 17:16:03] 2025-06-05 21:15:45,217 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 17:16:03] 2025-06-05 21:15:45,217 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 17:16:03] 2025-06-05 21:15:45,217 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 17:16:03] 2025-06-05 21:15:45,217 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 17:16:03] 2025-06-05 21:15:45,217 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 17:16:03] 2025-06-05 21:15:45,217 | INFO     | job 6668234300 has completed (purged errors)
[2025-06-05 17:16:03] 2025-06-05 21:15:45,217 | INFO     | overall cleanup function is called
[2025-06-05 17:16:03] 2025-06-05 21:15:46,224 | INFO     | --- collectZombieJob: --- 10, [16650]
[2025-06-05 17:16:03] 2025-06-05 21:15:46,224 | INFO     | zombie collector waiting for pid 16650
[2025-06-05 17:16:03] 2025-06-05 21:15:46,224 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 17:16:03] 2025-06-05 21:15:46,224 | INFO     | collected zombie processes
[2025-06-05 17:16:03] 2025-06-05 21:15:46,225 | INFO     | will attempt to kill all subprocesses of pid=16650
[2025-06-05 17:16:03] 2025-06-05 21:15:46,454 | INFO     | process IDs to be killed: [16650] (in reverse order)
[2025-06-05 17:16:03] 2025-06-05 21:15:46,540 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 17:16:03] 2025-06-05 21:15:46,541 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 17:16:03] 2025-06-05 21:15:46,551 | INFO     | did not find any defunct processes belonging to 16650
[2025-06-05 17:16:03] 2025-06-05 21:15:46,560 | INFO     | did not find any defunct processes belonging to 16650
[2025-06-05 17:16:03] 2025-06-05 21:15:46,560 | INFO     | ready for new job
[2025-06-05 17:16:03] 2025-06-05 21:15:46,560 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 17:16:03] 2025-06-05 21:15:46,561 | INFO     | **************************************
[2025-06-05 17:16:03] 2025-06-05 21:15:46,562 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 17:16:03] 2025-06-05 21:15:46,562 | INFO     | **************************************
[2025-06-05 17:16:03] 2025-06-05 21:15:46,562 | INFO     | 
[2025-06-05 17:16:03] 2025-06-05 21:15:46,566 | INFO     | architecture information:
[2025-06-05 17:16:03] 2025-06-05 21:15:46,566 | INFO     | executing command: cat /etc/os-release
[2025-06-05 17:16:03] 2025-06-05 21:15:46,576 | INFO     | cat /etc/os-release:
[2025-06-05 17:16:03] NAME="CentOS Linux"
[2025-06-05 17:16:03] VERSION="7 (Core)"
[2025-06-05 17:16:03] ID="centos"
[2025-06-05 17:16:03] ID_LIKE="rhel fedora"
[2025-06-05 17:16:03] VERSION_ID="7"
[2025-06-05 17:16:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 17:16:03] ANSI_COLOR="0;31"
[2025-06-05 17:16:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 17:16:03] HOME_URL="https://www.centos.org/"
[2025-06-05 17:16:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 17:16:03] 
[2025-06-05 17:16:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 17:16:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 17:16:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 17:16:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 17:16:03] 
[2025-06-05 17:16:03] 2025-06-05 21:15:46,576 | INFO     | **************************************
[2025-06-05 17:16:03] 2025-06-05 21:15:47,079 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 17:16:03] 2025-06-05 21:15:47,096 | INFO     | sufficient remaining disk space (106093871104 B)
[2025-06-05 17:16:03] 2025-06-05 21:15:47,096 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 17:16:03] 2025-06-05 21:15:47,097 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 17:16:03] 2025-06-05 21:15:47,097 | INFO     | update_server=False
[2025-06-05 17:16:03] 2025-06-05 21:15:47,097 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 17:16:03] 2025-06-05 21:15:47,097 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 17:16:03] 2025-06-05 21:15:47,097 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 17:16:03] 2025-06-05 21:15:47,097 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 17:16:03] 2025-06-05 21:15:47,098 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 17:16:03] 2025-06-05 21:15:47,098 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 17:16:03] 2025-06-05 21:15:47,098 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 17:16:03] 2025-06-05 21:15:47,699 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 17:16:03] 2025-06-05 21:15:47,700 | INFO     | aborting loop
[2025-06-05 17:16:03] 2025-06-05 21:15:47,939 | INFO     | all data control threads have been joined
[2025-06-05 17:16:03] 2025-06-05 21:15:48,102 | INFO     | [job] retrieve thread has finished
[2025-06-05 17:16:03] 2025-06-05 21:15:48,103 | INFO     | [job] queue monitor thread has finished
[2025-06-05 17:16:03] 2025-06-05 21:15:48,253 | INFO     | all payload control threads have been joined
[2025-06-05 17:16:03] 2025-06-05 21:15:48,531 | INFO     | [data] copytool_in thread has finished
[2025-06-05 17:16:03] 2025-06-05 21:15:48,541 | INFO     | all job control threads have been joined
[2025-06-05 17:16:03] 2025-06-05 21:15:48,705 | INFO     | [job] job monitor thread has finished
[2025-06-05 17:16:03] 2025-06-05 21:15:48,769 | INFO     | [payload] validate_post thread has finished
[2025-06-05 17:16:03] 2025-06-05 21:15:48,882 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 17:16:03] 2025-06-05 21:15:48,944 | INFO     | [data] control thread has finished
[2025-06-05 17:16:03] 2025-06-05 21:15:48,982 | INFO     | [job] validate thread has finished
[2025-06-05 17:16:03] 2025-06-05 21:15:49,102 | INFO     | [data] copytool_out thread has finished
[2025-06-05 17:16:03] 2025-06-05 21:15:49,231 | INFO     | [payload] failed_post thread has finished
[2025-06-05 17:16:03] 2025-06-05 21:15:49,259 | INFO     | [payload] control thread has finished
[2025-06-05 17:16:03] 2025-06-05 21:15:49,331 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 17:16:03] 2025-06-05 21:15:49,525 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 17:16:03] 2025-06-05 21:15:49,545 | INFO     | [job] control thread has finished
[2025-06-05 17:16:03] 2025-06-05 21:15:50,435 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 17:16:03] 2025-06-05 21:15:54,442 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 17:16:03] 2025-06-05 21:15:57,402 | INFO     | job.realtimelogging is not enabled
[2025-06-05 17:16:03] 2025-06-05 21:15:58,408 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 17:16:03] 2025-06-05 21:15:58,431 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139676133136192)>', '<ExcThread(monitor, started 139675906246400)>']
[2025-06-05 17:16:03] 2025-06-05 21:15:59,161 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 17:16:03] 2025-06-05 21:15:59,162 | INFO     | [monitor] control thread has ended
[2025-06-05 17:16:03] 2025-06-05 21:16:03,457 | INFO     | all workflow threads have been joined
[2025-06-05 17:16:03] 2025-06-05 21:16:03,458 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 17:16:03] 2025-06-05 21:16:03,458 | INFO     | traces error code: 0
[2025-06-05 17:16:03] 2025-06-05 21:16:03,458 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 17:16:03] 2025-06-05 21:16:03,624 [wrapper] ==== pilot stdout END ====
[2025-06-05 17:16:03] 2025-06-05 21:16:03,627 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 17:16:03] 2025-06-05 21:16:03,630 [wrapper] pilotpid: 8958
[2025-06-05 17:16:03] 2025-06-05 21:16:03,632 [wrapper] Pilot exit status: 0
[2025-06-05 17:16:03] 2025-06-05 21:16:03,641 [wrapper] pandaids: 6668234300
[2025-06-05 17:16:03] 2025-06-05 21:16:03,702 [wrapper] cleanup supervisor_pilot 36080 8959
[2025-06-05 17:16:03] 2025-06-05 21:16:03,705 [wrapper] Test setup, not cleaning
[2025-06-05 17:16:03] 2025-06-05 21:16:03,708 [wrapper] apfmon messages muted
[2025-06-05 17:16:03] 2025-06-05 21:16:03,710 [wrapper] ==== wrapper stdout END ====
[2025-06-05 17:16:03] 2025-06-05 21:16:03,712 [wrapper] ==== wrapper stderr END ====
[2025-06-05 17:16:03]  *** Error codes and diagnostics ***
[2025-06-05 17:16:03]     "exeErrorCode": 0,
[2025-06-05 17:16:03]     "exeErrorDiag": "",
[2025-06-05 17:16:03]     "pilotErrorCode": 0,
[2025-06-05 17:16:03]     "pilotErrorDiag": "",
[2025-06-05 17:16:03]  *** Listing of results directory ***
[2025-06-05 17:16:03] total 417320
[2025-06-05 17:16:03] -rw-r--r-- 1 boincer umatlas    495897 May 28 04:16 pilot3.tar.gz
[2025-06-05 17:16:03] -rw-r--r-- 1 boincer umatlas      5111 May 28 04:53 queuedata.json
[2025-06-05 17:16:03] -rwx------ 1 boincer umatlas     37140 May 28 04:54 runpilot2-wrapper.sh
[2025-06-05 17:16:03] -rw-r--r-- 1 boincer umatlas       100 Jun  5 15:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 17:16:03] -rwxr-xr-x 1 boincer umatlas      7986 Jun  5 15:18 run_atlas
[2025-06-05 17:16:03] -rw-r--r-- 1 boincer umatlas       105 Jun  5 15:18 job.xml
[2025-06-05 17:16:03] -rw-r--r-- 2 boincer umatlas 224162138 Jun  5 15:18 EVNT.44871834._003191.pool.root.1
[2025-06-05 17:16:03] -rw-r--r-- 2 boincer umatlas     15093 Jun  5 15:18 start_atlas.sh
[2025-06-05 17:16:03] drwxrwx--x 2 boincer umatlas      4096 Jun  5 15:18 shared
[2025-06-05 17:16:03] -rw-r--r-- 2 boincer umatlas    508884 Jun  5 15:18 input.tar.gz
[2025-06-05 17:16:03] -rw-r--r-- 1 boincer umatlas         0 Jun  5 15:18 boinc_lockfile
[2025-06-05 17:16:03] -rw-r--r-- 1 boincer umatlas      2559 Jun  5 15:18 pandaJob.out
[2025-06-05 17:16:03] -rw------- 1 boincer umatlas    987599 Jun  5 15:19 agis_schedconf.cvmfs.json
[2025-06-05 17:16:03] -rw------- 1 boincer umatlas   1598969 Jun  5 15:19 agis_ddmendpoints.agis.ALL.json
[2025-06-05 17:16:03] drwx------ 4 boincer umatlas      4096 Jun  5 15:19 pilot3
[2025-06-05 17:16:03] -rw-r--r-- 1 boincer umatlas      6386 Jun  5 17:09 init_data.xml
[2025-06-05 17:16:03] -rw------- 1 boincer umatlas 197373736 Jun  5 17:15 HITS.44871837._081709.pool.root.1
[2025-06-05 17:16:03] -rw------- 1 boincer umatlas        95 Jun  5 17:15 pilot_heartbeat.json
[2025-06-05 17:16:03] -rw-r--r-- 1 boincer umatlas       530 Jun  5 17:15 boinc_task_state.xml
[2025-06-05 17:16:03] -rw------- 1 boincer umatlas      1073 Jun  5 17:15 memory_monitor_summary.json
[2025-06-05 17:16:03] -rw------- 1 boincer umatlas    320252 Jun  5 17:15 log.44871837._081709.job.log.tgz.1
[2025-06-05 17:16:03] -rw------- 1 boincer umatlas      7743 Jun  5 17:15 heartbeat.json
[2025-06-05 17:16:03] -rw-r--r-- 1 boincer umatlas      8192 Jun  5 17:16 boinc_mmap_file
[2025-06-05 17:16:03] -rw-r--r-- 1 boincer umatlas        27 Jun  5 17:16 wrapper_checkpoint.txt
[2025-06-05 17:16:03] -rw------- 1 boincer umatlas      4549 Jun  5 17:16 pilotlog.txt
[2025-06-05 17:16:03] -rw------- 1 boincer umatlas    660664 Jun  5 17:16 log.44871837._081709.job.log.1
[2025-06-05 17:16:03] -rw------- 1 boincer umatlas       357 Jun  5 17:16 output.list
[2025-06-05 17:16:03] -rw-r--r-- 1 boincer umatlas       620 Jun  5 17:16 runtime_log
[2025-06-05 17:16:03] -rw------- 1 boincer umatlas   1003520 Jun  5 17:16 result.tar.gz
[2025-06-05 17:16:03] -rw------- 1 boincer umatlas       658 Jun  5 17:16 xiYMDm6iRe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm4ibKDmH7Mn7n.diag
[2025-06-05 17:16:03] -rw-r--r-- 1 boincer umatlas      8654 Jun  5 17:16 runtime_log.err
[2025-06-05 17:16:03] -rw-r--r-- 1 boincer umatlas     21158 Jun  5 17:16 stderr.txt
[2025-06-05 17:16:03] HITS file was successfully produced:
[2025-06-05 17:16:03] -rw------- 1 boincer umatlas 197373736 Jun  5 17:15 shared/HITS.pool.root.1
[2025-06-05 17:16:03]  *** Contents of shared directory: ***
[2025-06-05 17:16:03] total 413160
[2025-06-05 17:16:03] -rw-r--r-- 2 boincer umatlas 224162138 Jun  5 15:18 ATLAS.root_0
[2025-06-05 17:16:03] -rw-r--r-- 2 boincer umatlas     15093 Jun  5 15:18 start_atlas.sh
[2025-06-05 17:16:03] -rw-r--r-- 2 boincer umatlas    508884 Jun  5 15:18 input.tar.gz
[2025-06-05 17:16:03] -rw------- 1 boincer umatlas 197373736 Jun  5 17:15 HITS.pool.root.1
[2025-06-05 17:16:03] -rw------- 1 boincer umatlas   1003520 Jun  5 17:16 result.tar.gz
17:16:05 (973): run_atlas exited; CPU time 42994.610623
17:16:05 (973): called boinc_finish(0)

</stderr_txt>
]]>

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