Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:19:22 (742045): wrapper (7.7.26015): starting
14:19:22 (742045): wrapper: running run_atlas (--nthreads 12)
[2025-06-05 14:19:22] Arguments: --nthreads 12
[2025-06-05 14:19:22] Threads: 12
[2025-06-05 14:19:22] Checking for CVMFS
[2025-06-05 14:19:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 14:19:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 14:19:23] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 14:19:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 14:19:23] 2.12.6.0 84603 1562 166192 146829 3 444 23964041 25181185 22771 16776704 0 5348328 99.166 11742951 16203 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-05 14:19:23] CVMFS is ok
[2025-06-05 14:19:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 14:19:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 14:19:23] Further information can be found at the LHC@home message board.
[2025-06-05 14:19:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 14:19:23] Checking for apptainer binary...
[2025-06-05 14:19:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 14:19:23] Running /usr/bin/apptainer --version
[2025-06-05 14:19:23] apptainer version 1.4.1-1.el9
[2025-06-05 14:19:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 14:19:23] c-16-37.aglt2.org
[2025-06-05 14:19:23] apptainer works
[2025-06-05 14:19:23] Set ATHENA_PROC_NUMBER=12
[2025-06-05 14:19:23] Set ATHENA_CORE_NUMBER=12
[2025-06-05 14:19:23] Starting ATLAS job with PandaID=6668440954
[2025-06-05 14:19:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 17:14:38]  *** The last 200 lines of the pilot log: ***
[2025-06-05 17:14:38] 2025-06-05 21:14:23,582 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 17:14:38] 2025-06-05 21:14:23,582 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6668440954/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 17:14:38] 2025-06-05 21:14:23,583 | INFO     | extracted standard info from prmon json
[2025-06-05 17:14:38] 2025-06-05 21:14:23,583 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 17:14:38] 2025-06-05 21:14:23,584 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 17:14:38] 2025-06-05 21:14:23,584 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 17:14:38] 2025-06-05 21:14:23,584 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 17:14:38] 2025-06-05 21:14:23,588 | INFO     | fitting pss+swap vs Time
[2025-06-05 17:14:38] 2025-06-05 21:14:23,588 | INFO     | sum of square deviations: 1577794962.1627982
[2025-06-05 17:14:38] 2025-06-05 21:14:23,589 | INFO     | sum of deviations: -24990011255.674423
[2025-06-05 17:14:38] 2025-06-05 21:14:23,589 | INFO     | mean x: 1749152817.5697675
[2025-06-05 17:14:38] 2025-06-05 21:14:23,590 | INFO     | mean y: 2363727.1395348837
[2025-06-05 17:14:38] 2025-06-05 21:14:23,590 | INFO     | -- intersect: 27706437860.4761
[2025-06-05 17:14:38] 2025-06-05 21:14:23,590 | INFO     | intersect: 27706437860.4761
[2025-06-05 17:14:38] 2025-06-05 21:14:23,590 | INFO     | chi2: 2.526241123482515
[2025-06-05 17:14:38] 2025-06-05 21:14:23,590 | INFO     | sum of square deviations: 1444158907.137725
[2025-06-05 17:14:38] 2025-06-05 21:14:23,591 | INFO     | sum of deviations: -11634004143.820362
[2025-06-05 17:14:38] 2025-06-05 21:14:23,592 | INFO     | mean x: 1749152665.0718563
[2025-06-05 17:14:38] 2025-06-05 21:14:23,592 | INFO     | mean y: 2378711.48502994
[2025-06-05 17:14:38] 2025-06-05 21:14:23,592 | INFO     | -- intersect: 14093382999.893105
[2025-06-05 17:14:38] 2025-06-05 21:14:23,592 | INFO     | intersect: 14093382999.893105
[2025-06-05 17:14:38] 2025-06-05 21:14:23,592 | INFO     | chi2: 1.8577907821581565
[2025-06-05 17:14:38] 2025-06-05 21:14:23,592 | INFO     | current chi2=1.8577907821581565 (change=26.46027471846692 %)
[2025-06-05 17:14:38] 2025-06-05 21:14:23,593 | INFO     | sum of square deviations: 1318290439.6111114
[2025-06-05 17:14:38] 2025-06-05 21:14:23,594 | INFO     | sum of deviations: -11067964960.314814
[2025-06-05 17:14:38] 2025-06-05 21:14:23,594 | INFO     | mean x: 1749152512.574074
[2025-06-05 17:14:38] 2025-06-05 21:14:23,594 | INFO     | mean y: 2379390.734567901
[2025-06-05 17:14:38] 2025-06-05 21:14:23,594 | INFO     | -- intersect: 14687731068.72097
[2025-06-05 17:14:38] 2025-06-05 21:14:23,594 | INFO     | intersect: 14687731068.72097
[2025-06-05 17:14:38] 2025-06-05 21:14:23,594 | INFO     | chi2: 1.85552435123708
[2025-06-05 17:14:38] 2025-06-05 21:14:23,594 | INFO     | current chi2=1.85552435123708 (change=0.12199602575504298 %)
[2025-06-05 17:14:38] 2025-06-05 21:14:23,594 | INFO     | right removable region: 161
[2025-06-05 17:14:38] 2025-06-05 21:14:23,595 | INFO     | sum of square deviations: 1444151587.137725
[2025-06-05 17:14:38] 2025-06-05 21:14:23,596 | INFO     | sum of deviations: -53780850019.17366
[2025-06-05 17:14:38] 2025-06-05 21:14:23,596 | INFO     | mean x: 1749152970.0718563
[2025-06-05 17:14:38] 2025-06-05 21:14:23,596 | INFO     | mean y: 2396277.431137725
[2025-06-05 17:14:38] 2025-06-05 21:14:23,596 | INFO     | -- intersect: 65141634001.4107
[2025-06-05 17:14:38] 2025-06-05 21:14:23,596 | INFO     | intersect: 65141634001.4107
[2025-06-05 17:14:38] 2025-06-05 21:14:23,597 | INFO     | chi2: 0.8758629465279487
[2025-06-05 17:14:38] 2025-06-05 21:14:23,597 | INFO     | current chi2=0.8758629465279487 (change=65.3294003337045 %)
[2025-06-05 17:14:38] 2025-06-05 21:14:23,597 | INFO     | sum of square deviations: 1318275799.6111114
[2025-06-05 17:14:38] 2025-06-05 21:14:23,598 | INFO     | sum of deviations: -50325234737.611115
[2025-06-05 17:14:38] 2025-06-05 21:14:23,598 | INFO     | mean x: 1749153122.574074
[2025-06-05 17:14:38] 2025-06-05 21:14:23,598 | INFO     | mean y: 2392031.092592593
[2025-06-05 17:14:38] 2025-06-05 21:14:23,598 | INFO     | -- intersect: 66776386904.95236
[2025-06-05 17:14:38] 2025-06-05 21:14:23,598 | INFO     | intersect: 66776386904.95236
[2025-06-05 17:14:38] 2025-06-05 21:14:23,599 | INFO     | chi2: 0.8625104229662401
[2025-06-05 17:14:38] 2025-06-05 21:14:23,599 | INFO     | current chi2=0.8625104229662401 (change=1.5244991941536021 %)
[2025-06-05 17:14:38] 2025-06-05 21:14:23,599 | INFO     | left removable region: 20
[2025-06-05 17:14:38] 2025-06-05 21:14:23,599 | INFO     | sum of square deviations: 869187180.9787221
[2025-06-05 17:14:38] 2025-06-05 21:14:23,600 | INFO     | sum of deviations: -25343988008.65957
[2025-06-05 17:14:38] 2025-06-05 21:14:23,600 | INFO     | mean x: 1749153092.0851064
[2025-06-05 17:14:38] 2025-06-05 21:14:23,600 | INFO     | mean y: 2395033.304964539
[2025-06-05 17:14:38] 2025-06-05 21:14:23,600 | INFO     | -- intersect: 51004660093.40134
[2025-06-05 17:14:38] 2025-06-05 21:14:23,600 | INFO     | intersect: 51004660093.40134
[2025-06-05 17:14:38] 2025-06-05 21:14:23,601 | INFO     | chi2: 0.14257791366056766
[2025-06-05 17:14:38] 2025-06-05 21:14:23,601 | INFO     | -- intersect: 51004660093.40134
[2025-06-05 17:14:38] 2025-06-05 21:14:23,601 | INFO     | current memory leak: -29.16 B/s (using 141 data points, chi2=0.14)
[2025-06-05 17:14:38] 2025-06-05 21:14:23,602 | INFO     | ..............................
[2025-06-05 17:14:38] 2025-06-05 21:14:23,602 | INFO     | . Timing measurements:
[2025-06-05 17:14:38] 2025-06-05 21:14:23,602 | INFO     | . get job = 0 s
[2025-06-05 17:14:38] 2025-06-05 21:14:23,602 | INFO     | . initial setup = 2 s
[2025-06-05 17:14:38] 2025-06-05 21:14:23,602 | INFO     | . payload setup = 7 s
[2025-06-05 17:14:38] 2025-06-05 21:14:23,602 | INFO     | . stage-in = 0 s
[2025-06-05 17:14:38] 2025-06-05 21:14:23,602 | INFO     | . payload execution = 10453 s
[2025-06-05 17:14:38] 2025-06-05 21:14:23,602 | INFO     | . stage-out = 0 s
[2025-06-05 17:14:38] 2025-06-05 21:14:23,602 | INFO     | . log creation = 0 s
[2025-06-05 17:14:38] 2025-06-05 21:14:23,602 | INFO     | ..............................
[2025-06-05 17:14:38] 2025-06-05 21:14:23,702 | INFO     | 
[2025-06-05 17:14:38] 2025-06-05 21:14:23,702 | INFO     | job summary report
[2025-06-05 17:14:38] 2025-06-05 21:14:23,702 | INFO     | --------------------------------------------------
[2025-06-05 17:14:38] 2025-06-05 21:14:23,702 | INFO     | PanDA job id: 6668440954
[2025-06-05 17:14:38] 2025-06-05 21:14:23,702 | INFO     | task id: 44871837
[2025-06-05 17:14:38] 2025-06-05 21:14:23,703 | INFO     | errors: (none)
[2025-06-05 17:14:38] 2025-06-05 21:14:23,703 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 17:14:38] 2025-06-05 21:14:23,703 | INFO     | pilot state: finished 
[2025-06-05 17:14:38] 2025-06-05 21:14:23,703 | INFO     | transexitcode: 0
[2025-06-05 17:14:38] 2025-06-05 21:14:23,703 | INFO     | exeerrorcode: 0
[2025-06-05 17:14:38] 2025-06-05 21:14:23,703 | INFO     | exeerrordiag: 
[2025-06-05 17:14:38] 2025-06-05 21:14:23,703 | INFO     | exitcode: 0
[2025-06-05 17:14:38] 2025-06-05 21:14:23,703 | INFO     | exitmsg: OK
[2025-06-05 17:14:38] 2025-06-05 21:14:23,703 | INFO     | cpuconsumptiontime: 69373 s
[2025-06-05 17:14:38] 2025-06-05 21:14:23,703 | INFO     | nevents: 400
[2025-06-05 17:14:38] 2025-06-05 21:14:23,703 | INFO     | neventsw: 0
[2025-06-05 17:14:38] 2025-06-05 21:14:23,704 | INFO     | pid: 753139
[2025-06-05 17:14:38] 2025-06-05 21:14:23,704 | INFO     | pgrp: 753139
[2025-06-05 17:14:38] 2025-06-05 21:14:23,704 | INFO     | corecount: 12
[2025-06-05 17:14:38] 2025-06-05 21:14:23,704 | INFO     | event service: False
[2025-06-05 17:14:38] 2025-06-05 21:14:23,704 | INFO     | sizes: {0: 2397392, 1: 2397392, 5: 2397626, 11: 2397682, 10464: 2426518, 10465: 2426517, 10466: 2435642, 10468: 2435698, 10474: 2435868}
[2025-06-05 17:14:38] 2025-06-05 21:14:23,704 | INFO     | --------------------------------------------------
[2025-06-05 17:14:38] 2025-06-05 21:14:23,704 | INFO     | 
[2025-06-05 17:14:38] 2025-06-05 21:14:23,704 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 17:14:38] 2025-06-05 21:14:23,719 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 17:14:38] 2025-06-05 21:14:23,719 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 17:14:38] 2025-06-05 21:14:23,719 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 17:14:38] 2025-06-05 21:14:23,719 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 17:14:38] 2025-06-05 21:14:23,719 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 17:14:38] 2025-06-05 21:14:23,719 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 17:14:38] 2025-06-05 21:14:23,720 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 17:14:38] 2025-06-05 21:14:23,720 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 17:14:38] 2025-06-05 21:14:23,720 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 17:14:38] 2025-06-05 21:14:23,720 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 17:14:38] 2025-06-05 21:14:23,720 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 17:14:38] 2025-06-05 21:14:23,720 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 17:14:38] 2025-06-05 21:14:23,720 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 17:14:38] 2025-06-05 21:14:23,720 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 17:14:38] 2025-06-05 21:14:23,720 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 17:14:38] 2025-06-05 21:14:23,720 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 17:14:38] 2025-06-05 21:14:23,720 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 17:14:38] 2025-06-05 21:14:23,721 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 17:14:38] 2025-06-05 21:14:23,721 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 17:14:38] 2025-06-05 21:14:23,721 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 17:14:38] 2025-06-05 21:14:23,721 | INFO     | job 6668440954 has completed (purged errors)
[2025-06-05 17:14:38] 2025-06-05 21:14:23,721 | INFO     | overall cleanup function is called
[2025-06-05 17:14:38] 2025-06-05 21:14:24,728 | INFO     | --- collectZombieJob: --- 10, [753139]
[2025-06-05 17:14:38] 2025-06-05 21:14:24,729 | INFO     | zombie collector waiting for pid 753139
[2025-06-05 17:14:38] 2025-06-05 21:14:24,729 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 17:14:38] 2025-06-05 21:14:24,729 | INFO     | collected zombie processes
[2025-06-05 17:14:38] 2025-06-05 21:14:24,729 | INFO     | will attempt to kill all subprocesses of pid=753139
[2025-06-05 17:14:38] 2025-06-05 21:14:25,126 | INFO     | process IDs to be killed: [753139] (in reverse order)
[2025-06-05 17:14:38] 2025-06-05 21:14:25,248 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 17:14:38] 2025-06-05 21:14:25,248 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 17:14:38] 2025-06-05 21:14:25,263 | INFO     | did not find any defunct processes belonging to 753139
[2025-06-05 17:14:38] 2025-06-05 21:14:25,277 | INFO     | did not find any defunct processes belonging to 753139
[2025-06-05 17:14:38] 2025-06-05 21:14:25,277 | INFO     | ready for new job
[2025-06-05 17:14:38] 2025-06-05 21:14:25,278 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 17:14:38] 2025-06-05 21:14:25,279 | INFO     | **************************************
[2025-06-05 17:14:38] 2025-06-05 21:14:25,280 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 17:14:38] 2025-06-05 21:14:25,280 | INFO     | **************************************
[2025-06-05 17:14:38] 2025-06-05 21:14:25,280 | INFO     | 
[2025-06-05 17:14:38] 2025-06-05 21:14:25,294 | INFO     | architecture information:
[2025-06-05 17:14:38] 2025-06-05 21:14:25,295 | INFO     | executing command: cat /etc/os-release
[2025-06-05 17:14:38] 2025-06-05 21:14:25,308 | INFO     | cat /etc/os-release:
[2025-06-05 17:14:38] NAME="CentOS Linux"
[2025-06-05 17:14:38] VERSION="7 (Core)"
[2025-06-05 17:14:38] ID="centos"
[2025-06-05 17:14:38] ID_LIKE="rhel fedora"
[2025-06-05 17:14:38] VERSION_ID="7"
[2025-06-05 17:14:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 17:14:38] ANSI_COLOR="0;31"
[2025-06-05 17:14:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 17:14:38] HOME_URL="https://www.centos.org/"
[2025-06-05 17:14:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 17:14:38] 
[2025-06-05 17:14:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 17:14:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 17:14:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 17:14:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 17:14:38] 
[2025-06-05 17:14:38] 2025-06-05 21:14:25,308 | INFO     | **************************************
[2025-06-05 17:14:38] 2025-06-05 21:14:25,812 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 17:14:38] 2025-06-05 21:14:25,828 | INFO     | sufficient remaining disk space (64541949952 B)
[2025-06-05 17:14:38] 2025-06-05 21:14:25,838 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 17:14:38] 2025-06-05 21:14:25,839 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 17:14:38] 2025-06-05 21:14:25,839 | INFO     | update_server=False
[2025-06-05 17:14:38] 2025-06-05 21:14:25,839 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 17:14:38] 2025-06-05 21:14:26,079 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 17:14:38] 2025-06-05 21:14:26,079 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 17:14:38] 2025-06-05 21:14:26,079 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 17:14:38] 2025-06-05 21:14:26,360 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 17:14:38] 2025-06-05 21:14:26,628 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 17:14:38] 2025-06-05 21:14:26,628 | INFO     | aborting loop
[2025-06-05 17:14:38] 2025-06-05 21:14:26,669 | INFO     | all data control threads have been joined
[2025-06-05 17:14:38] 2025-06-05 21:14:26,844 | INFO     | [job] retrieve thread has finished
[2025-06-05 17:14:38] 2025-06-05 21:14:27,046 | INFO     | [payload] validate_post thread has finished
[2025-06-05 17:14:38] 2025-06-05 21:14:27,233 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 17:14:38] 2025-06-05 21:14:27,234 | INFO     | all job control threads have been joined
[2025-06-05 17:14:38] 2025-06-05 21:14:27,241 | INFO     | all payload control threads have been joined
[2025-06-05 17:14:38] 2025-06-05 21:14:27,270 | INFO     | [job] validate thread has finished
[2025-06-05 17:14:38] 2025-06-05 21:14:27,633 | INFO     | [job] job monitor thread has finished
[2025-06-05 17:14:38] 2025-06-05 21:14:27,651 | INFO     | [data] copytool_in thread has finished
[2025-06-05 17:14:38] 2025-06-05 21:14:27,674 | INFO     | [data] control thread has finished
[2025-06-05 17:14:38] 2025-06-05 21:14:27,766 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 17:14:38] 2025-06-05 21:14:27,783 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 17:14:38] 2025-06-05 21:14:28,071 | INFO     | [payload] failed_post thread has finished
[2025-06-05 17:14:38] 2025-06-05 21:14:28,161 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 17:14:38] 2025-06-05 21:14:28,240 | INFO     | [job] control thread has finished
[2025-06-05 17:14:38] 2025-06-05 21:14:28,247 | INFO     | [payload] control thread has finished
[2025-06-05 17:14:38] 2025-06-05 21:14:28,365 | INFO     | [data] copytool_out thread has finished
[2025-06-05 17:14:38] 2025-06-05 21:14:28,450 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 17:14:38] 2025-06-05 21:14:28,713 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 17:14:38] 2025-06-05 21:14:29,718 | INFO     | [job] queue monitor thread has finished
[2025-06-05 17:14:38] 2025-06-05 21:14:32,458 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 17:14:38] 2025-06-05 21:14:33,638 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140589753399104)>', '<ExcThread(monitor, started 140588909328128)>']
[2025-06-05 17:14:38] 2025-06-05 21:14:34,119 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 17:14:38] 2025-06-05 21:14:34,120 | INFO     | [monitor] control thread has ended
[2025-06-05 17:14:38] 2025-06-05 21:14:38,663 | INFO     | all workflow threads have been joined
[2025-06-05 17:14:38] 2025-06-05 21:14:38,663 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 17:14:38] 2025-06-05 21:14:38,663 | INFO     | traces error code: 0
[2025-06-05 17:14:38] 2025-06-05 21:14:38,663 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 17:14:38] 2025-06-05 21:14:38,792 [wrapper] ==== pilot stdout END ====
[2025-06-05 17:14:38] 2025-06-05 21:14:38,795 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 17:14:38] 2025-06-05 21:14:38,798 [wrapper] pilotpid: 745854
[2025-06-05 17:14:38] 2025-06-05 21:14:38,800 [wrapper] Pilot exit status: 0
[2025-06-05 17:14:38] 2025-06-05 21:14:38,824 [wrapper] pandaids: 6668440954
[2025-06-05 17:14:38] 2025-06-05 21:14:38,912 [wrapper] cleanup supervisor_pilot 1944977 745855
[2025-06-05 17:14:38] 2025-06-05 21:14:38,914 [wrapper] Test setup, not cleaning
[2025-06-05 17:14:38] 2025-06-05 21:14:38,918 [wrapper] apfmon messages muted
[2025-06-05 17:14:38] 2025-06-05 21:14:38,921 [wrapper] ==== wrapper stdout END ====
[2025-06-05 17:14:38] 2025-06-05 21:14:38,923 [wrapper] ==== wrapper stderr END ====
[2025-06-05 17:14:38]  *** Error codes and diagnostics ***
[2025-06-05 17:14:38]     "exeErrorCode": 0,
[2025-06-05 17:14:38]     "exeErrorDiag": "",
[2025-06-05 17:14:38]     "pilotErrorCode": 0,
[2025-06-05 17:14:38]     "pilotErrorDiag": "",
[2025-06-05 17:14:38]  *** Listing of results directory ***
[2025-06-05 17:14:38] total 425244
[2025-06-05 17:14:38] -rw-r--r--. 1 boincer umatlas    495897 May 28 07:45 pilot3.tar.gz
[2025-06-05 17:14:38] -rw-r--r--. 1 boincer umatlas      5111 May 28 08:28 queuedata.json
[2025-06-05 17:14:38] -rwx------. 1 boincer umatlas     37140 May 28 08:30 runpilot2-wrapper.sh
[2025-06-05 17:14:38] -rw-r--r--. 1 boincer umatlas       100 Jun  5 14:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 17:14:38] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  5 14:19 run_atlas
[2025-06-05 17:14:38] -rw-r--r--. 1 boincer umatlas       105 Jun  5 14:19 job.xml
[2025-06-05 17:14:38] -rw-r--r--. 2 boincer umatlas 225093079 Jun  5 14:19 EVNT.44871834._003288.pool.root.1
[2025-06-05 17:14:38] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 14:19 start_atlas.sh
[2025-06-05 17:14:38] drwxrwx--x. 2 boincer umatlas      4096 Jun  5 14:19 shared
[2025-06-05 17:14:38] -rw-r--r--. 2 boincer umatlas    508883 Jun  5 14:19 input.tar.gz
[2025-06-05 17:14:38] -rw-r--r--. 1 boincer umatlas         0 Jun  5 14:19 boinc_lockfile
[2025-06-05 17:14:38] -rw-r--r--. 1 boincer umatlas      2559 Jun  5 14:19 pandaJob.out
[2025-06-05 17:14:38] -rw-------. 1 boincer umatlas    987543 Jun  5 14:19 agis_schedconf.cvmfs.json
[2025-06-05 17:14:38] -rw-------. 1 boincer umatlas   1598969 Jun  5 14:19 agis_ddmendpoints.agis.ALL.json
[2025-06-05 17:14:38] drwx------. 4 boincer umatlas      4096 Jun  5 14:19 pilot3
[2025-06-05 17:14:38] -rw-r--r--. 1 boincer umatlas      6610 Jun  5 17:10 init_data.xml
[2025-06-05 17:14:38] -rw-------. 1 boincer umatlas 203813210 Jun  5 17:13 HITS.44871837._084283.pool.root.1
[2025-06-05 17:14:38] -rw-r--r--. 1 boincer umatlas       531 Jun  5 17:13 boinc_task_state.xml
[2025-06-05 17:14:38] -rw-------. 1 boincer umatlas        95 Jun  5 17:13 pilot_heartbeat.json
[2025-06-05 17:14:38] -rw-------. 1 boincer umatlas      1046 Jun  5 17:14 memory_monitor_summary.json
[2025-06-05 17:14:38] -rw-r--r--. 1 boincer umatlas        28 Jun  5 17:14 wrapper_checkpoint.txt
[2025-06-05 17:14:38] -rw-r--r--. 1 boincer umatlas      8192 Jun  5 17:14 boinc_mmap_file
[2025-06-05 17:14:38] -rw-------. 1 boincer umatlas    430033 Jun  5 17:14 log.44871837._084283.job.log.tgz.1
[2025-06-05 17:14:38] -rw-------. 1 boincer umatlas      7729 Jun  5 17:14 heartbeat.json
[2025-06-05 17:14:38] -rw-------. 1 boincer umatlas      4353 Jun  5 17:14 pilotlog.txt
[2025-06-05 17:14:38] -rw-------. 1 boincer umatlas    923168 Jun  5 17:14 log.44871837._084283.job.log.1
[2025-06-05 17:14:38] -rw-------. 1 boincer umatlas       357 Jun  5 17:14 output.list
[2025-06-05 17:14:38] -rw-r--r--. 1 boincer umatlas       620 Jun  5 17:14 runtime_log
[2025-06-05 17:14:38] -rw-------. 1 boincer umatlas   1372160 Jun  5 17:14 result.tar.gz
[2025-06-05 17:14:38] -rw-r--r--. 1 boincer umatlas      8657 Jun  5 17:14 runtime_log.err
[2025-06-05 17:14:38] -rw-------. 1 boincer umatlas       656 Jun  5 17:14 FxNODmN6Ue7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDma8bKDmKXXSwn.diag
[2025-06-05 17:14:38] -rw-r--r--. 1 boincer umatlas     20893 Jun  5 17:14 stderr.txt
[2025-06-05 17:14:39] HITS file was successfully produced:
[2025-06-05 17:14:39] -rw-------. 1 boincer umatlas 203813210 Jun  5 17:13 shared/HITS.pool.root.1
[2025-06-05 17:14:39]  *** Contents of shared directory: ***
[2025-06-05 17:14:39] total 420724
[2025-06-05 17:14:39] -rw-r--r--. 2 boincer umatlas 225093079 Jun  5 14:19 ATLAS.root_0
[2025-06-05 17:14:39] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 14:19 start_atlas.sh
[2025-06-05 17:14:39] -rw-r--r--. 2 boincer umatlas    508883 Jun  5 14:19 input.tar.gz
[2025-06-05 17:14:39] -rw-------. 1 boincer umatlas 203813210 Jun  5 17:13 HITS.pool.root.1
[2025-06-05 17:14:39] -rw-------. 1 boincer umatlas   1372160 Jun  5 17:14 result.tar.gz
17:14:40 (742045): run_atlas exited; CPU time 69829.111947
17:14:40 (742045): called boinc_finish(0)

</stderr_txt>
]]>

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