Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:57:13 (3748490): wrapper (7.7.26015): starting
13:57:13 (3748490): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 13:57:13] Arguments: --nthreads 8
[2025-06-05 13:57:13] Threads: 8
[2025-06-05 13:57:13] Checking for CVMFS
[2025-06-05 13:57:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 13:57:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 13:57:13] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 13:57:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 13:57:13] 2.12.6.0 4995 39081 600136 146827 1 934 30810751 32935937 25763 16776704 1 488243554 99.677 404944846 12890 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-05 13:57:13] CVMFS is ok
[2025-06-05 13:57:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 13:57:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 13:57:13] Further information can be found at the LHC@home message board.
[2025-06-05 13:57:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 13:57:13] Checking for apptainer binary...
[2025-06-05 13:57:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 13:57:13] Running /usr/bin/apptainer --version
[2025-06-05 13:57:13] apptainer version 1.4.1-1.el9
[2025-06-05 13:57:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 13:57:13] c7-6-31.aglt2.org
[2025-06-05 13:57:13] apptainer works
[2025-06-05 13:57:13] Set ATHENA_PROC_NUMBER=8
[2025-06-05 13:57:13] Set ATHENA_CORE_NUMBER=8
[2025-06-05 13:57:13] Starting ATLAS job with PandaID=6667732025
[2025-06-05 13:57:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 15:16:51]  *** The last 200 lines of the pilot log: ***
[2025-06-05 15:16:51]  status=None
[2025-06-05 15:16:51]  status_code=0
[2025-06-05 15:16:51]  storage_token=
[2025-06-05 15:16:51]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6667732025/log.44871837._075459.job.log.tgz.1
[2025-06-05 15:16:51]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c9/14/log.44871837._075459.job.log.tgz.1
[2025-06-05 15:16:51]  workdir=None
[2025-06-05 15:16:51] ]
[2025-06-05 15:16:51] 2025-06-05 19:16:32,411 | INFO     | transferring file log.44871837._075459.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6667732025/log.44871837._075459.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-05 15:16:51] 2025-06-05 19:16:32,411 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6667732025/log.44871837._075459.job.log.tgz.1 /tmp/boinchome/slots/0/log.44871837._075459.job
[2025-06-05 15:16:51] 2025-06-05 19:16:32,428 | INFO     | adding to output.list: log.44871837._075459.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c9/14/log.44871837._075459.job.log.tg
[2025-06-05 15:16:51] 2025-06-05 19:16:32,429 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-05 15:16:51] 2025-06-05 19:16:32,429 | INFO     | summary of transferred files:
[2025-06-05 15:16:51] 2025-06-05 19:16:32,429 | INFO     |  -- lfn=log.44871837._075459.job.log.tgz.1, status_code=0, status=transferred
[2025-06-05 15:16:51] 2025-06-05 19:16:32,429 | INFO     | stage-out finished correctly
[2025-06-05 15:16:51] 2025-06-05 19:16:33,952 | WARNING  | process 3758725 can no longer be monitored (due to stat problems) - aborting
[2025-06-05 15:16:51] 2025-06-05 19:16:33,952 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6667732025/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 15:16:51] 2025-06-05 19:16:33,953 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6667732025/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 15:16:51] 2025-06-05 19:16:33,954 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3659922 B
[2025-06-05 15:16:51] 2025-06-05 19:16:33,955 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15783 B
[2025-06-05 15:16:51] 2025-06-05 19:16:33,955 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 15:16:51] 2025-06-05 19:16:33,975 | INFO     | sufficient remaining disk space (76610011136 B)
[2025-06-05 15:16:51] 2025-06-05 19:16:33,975 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-05 15:16:51] 2025-06-05 19:16:33,976 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6667732025: 3960167 B (within 2537553920 B limit)
[2025-06-05 15:16:51] 2025-06-05 19:16:33,976 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6667732025/HITS.44871837._075459.pool.root.1 does not exist (skip from workdir size calculation)
[2025-06-05 15:16:51] 2025-06-05 19:16:33,976 | INFO     | total size of present files: 0 B (workdir size: 3960167 B)
[2025-06-05 15:16:51] 2025-06-05 19:16:33,976 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6667732025/HITS.44871837._075459.pool.root.1 since it does not exist
[2025-06-05 15:16:51] 2025-06-05 19:16:34,027 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-05 15:16:51] 2025-06-05 19:16:34,439 | INFO     | number of running child processes to parent process 3758725: 1
[2025-06-05 15:16:51] 2025-06-05 19:16:34,440 | INFO     | maximum number of monitored processes: 6
[2025-06-05 15:16:51] 2025-06-05 19:16:34,711 | INFO     | job 6667732025 has state=finished
[2025-06-05 15:16:51] 2025-06-05 19:16:34,712 | INFO     | preparing for final server update for job 6667732025 in state='finished'
[2025-06-05 15:16:51] 2025-06-05 19:16:34,712 | INFO     | this job has now completed (state=finished)
[2025-06-05 15:16:51] 2025-06-05 19:16:34,712 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-05 15:16:51] 2025-06-05 19:16:34,712 | INFO     | log transfer has been attempted: DONE
[2025-06-05 15:16:51] 2025-06-05 19:16:34,712 | INFO     | job 6667732025 has finished - writing final server update
[2025-06-05 15:16:51] 2025-06-05 19:16:34,713 | INFO     | total number of processed events: 400 (read)
[2025-06-05 15:16:51] 2025-06-05 19:16:34,730 | INFO     | executing command: lscpu
[2025-06-05 15:16:51] 2025-06-05 19:16:34,822 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 15:16:51] 2025-06-05 19:16:36,942 | INFO     | monitor loop #345: job 0:6667732025 is in state 'finished'
[2025-06-05 15:16:51] 2025-06-05 19:16:36,943 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 15:16:51] 2025-06-05 19:16:38,444 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 15:16:51] 2025-06-05 19:16:38,444 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6667732025/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 15:16:51] 2025-06-05 19:16:38,445 | INFO     | extracted standard info from prmon json
[2025-06-05 15:16:51] 2025-06-05 19:16:38,445 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 15:16:51] 2025-06-05 19:16:38,445 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 15:16:51] 2025-06-05 19:16:38,445 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 15:16:51] 2025-06-05 19:16:38,445 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 15:16:51] 2025-06-05 19:16:38,446 | INFO     | fitting pss+swap vs Time
[2025-06-05 15:16:51] 2025-06-05 19:16:38,447 | INFO     | sum of square deviations: 110960220.0
[2025-06-05 15:16:51] 2025-06-05 19:16:38,447 | INFO     | sum of deviations: 1812346294.9999998
[2025-06-05 15:16:51] 2025-06-05 19:16:38,447 | INFO     | mean x: 1749148709.0
[2025-06-05 15:16:51] 2025-06-05 19:16:38,447 | INFO     | mean y: 2229698.8169014086
[2025-06-05 15:16:51] 2025-06-05 19:16:38,447 | INFO     | -- intersect: -28567136711.597412
[2025-06-05 15:16:51] 2025-06-05 19:16:38,447 | INFO     | intersect: -28567136711.597412
[2025-06-05 15:16:51] 2025-06-05 19:16:38,447 | INFO     | chi2: 0.021676061200556585
[2025-06-05 15:16:51] 2025-06-05 19:16:38,447 | INFO     | -- intersect: -28567136711.597412
[2025-06-05 15:16:51] 2025-06-05 19:16:38,448 | INFO     | current memory leak: 16.33 B/s (using 71 data points, chi2=0.02)
[2025-06-05 15:16:51] 2025-06-05 19:16:38,448 | INFO     | ..............................
[2025-06-05 15:16:51] 2025-06-05 19:16:38,448 | INFO     | . Timing measurements:
[2025-06-05 15:16:51] 2025-06-05 19:16:38,448 | INFO     | . get job = 0 s
[2025-06-05 15:16:51] 2025-06-05 19:16:38,448 | INFO     | . initial setup = 2 s
[2025-06-05 15:16:51] 2025-06-05 19:16:38,448 | INFO     | . payload setup = 5 s
[2025-06-05 15:16:51] 2025-06-05 19:16:38,448 | INFO     | . stage-in = 0 s
[2025-06-05 15:16:51] 2025-06-05 19:16:38,448 | INFO     | . payload execution = 4723 s
[2025-06-05 15:16:51] 2025-06-05 19:16:38,448 | INFO     | . stage-out = 0 s
[2025-06-05 15:16:51] 2025-06-05 19:16:38,448 | INFO     | . log creation = 0 s
[2025-06-05 15:16:51] 2025-06-05 19:16:38,448 | INFO     | ..............................
[2025-06-05 15:16:51] 2025-06-05 19:16:38,521 | INFO     | 
[2025-06-05 15:16:51] 2025-06-05 19:16:38,521 | INFO     | job summary report
[2025-06-05 15:16:51] 2025-06-05 19:16:38,521 | INFO     | --------------------------------------------------
[2025-06-05 15:16:51] 2025-06-05 19:16:38,521 | INFO     | PanDA job id: 6667732025
[2025-06-05 15:16:51] 2025-06-05 19:16:38,521 | INFO     | task id: 44871837
[2025-06-05 15:16:51] 2025-06-05 19:16:38,521 | INFO     | errors: (none)
[2025-06-05 15:16:51] 2025-06-05 19:16:38,521 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 15:16:51] 2025-06-05 19:16:38,521 | INFO     | pilot state: finished 
[2025-06-05 15:16:51] 2025-06-05 19:16:38,521 | INFO     | transexitcode: 0
[2025-06-05 15:16:51] 2025-06-05 19:16:38,521 | INFO     | exeerrorcode: 0
[2025-06-05 15:16:51] 2025-06-05 19:16:38,521 | INFO     | exeerrordiag: 
[2025-06-05 15:16:51] 2025-06-05 19:16:38,521 | INFO     | exitcode: 0
[2025-06-05 15:16:51] 2025-06-05 19:16:38,521 | INFO     | exitmsg: OK
[2025-06-05 15:16:51] 2025-06-05 19:16:38,522 | INFO     | cpuconsumptiontime: 34831 s
[2025-06-05 15:16:51] 2025-06-05 19:16:38,522 | INFO     | nevents: 400
[2025-06-05 15:16:51] 2025-06-05 19:16:38,522 | INFO     | neventsw: 0
[2025-06-05 15:16:51] 2025-06-05 19:16:38,522 | INFO     | pid: 3758725
[2025-06-05 15:16:51] 2025-06-05 19:16:38,522 | INFO     | pgrp: 3758725
[2025-06-05 15:16:51] 2025-06-05 19:16:38,522 | INFO     | corecount: 8
[2025-06-05 15:16:51] 2025-06-05 19:16:38,522 | INFO     | event service: False
[2025-06-05 15:16:51] 2025-06-05 19:16:38,522 | INFO     | sizes: {0: 2397341, 4: 2397547, 11: 2397575, 4733: 2423650, 4734: 2432646, 4736: 2432674, 4740: 2432972}
[2025-06-05 15:16:51] 2025-06-05 19:16:38,522 | INFO     | --------------------------------------------------
[2025-06-05 15:16:51] 2025-06-05 19:16:38,522 | INFO     | 
[2025-06-05 15:16:51] 2025-06-05 19:16:38,522 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 15:16:51] 2025-06-05 19:16:38,541 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 15:16:51] 2025-06-05 19:16:38,541 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 15:16:51] 2025-06-05 19:16:38,541 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 15:16:51] 2025-06-05 19:16:38,541 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 15:16:51] 2025-06-05 19:16:38,541 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 15:16:51] 2025-06-05 19:16:38,541 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 15:16:51] 2025-06-05 19:16:38,542 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 15:16:51] 2025-06-05 19:16:38,542 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 15:16:51] 2025-06-05 19:16:38,542 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 15:16:51] 2025-06-05 19:16:38,542 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 15:16:51] 2025-06-05 19:16:38,542 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 15:16:51] 2025-06-05 19:16:38,542 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 15:16:51] 2025-06-05 19:16:38,542 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 15:16:51] 2025-06-05 19:16:38,542 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 15:16:51] 2025-06-05 19:16:38,542 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 15:16:51] 2025-06-05 19:16:38,542 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 15:16:51] 2025-06-05 19:16:38,542 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 15:16:51] 2025-06-05 19:16:38,542 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 15:16:51] 2025-06-05 19:16:38,542 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 15:16:51] 2025-06-05 19:16:38,542 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 15:16:51] 2025-06-05 19:16:38,542 | INFO     | job 6667732025 has completed (purged errors)
[2025-06-05 15:16:51] 2025-06-05 19:16:38,543 | INFO     | overall cleanup function is called
[2025-06-05 15:16:51] 2025-06-05 19:16:39,550 | INFO     | --- collectZombieJob: --- 10, [3758725]
[2025-06-05 15:16:51] 2025-06-05 19:16:39,550 | INFO     | zombie collector waiting for pid 3758725
[2025-06-05 15:16:51] 2025-06-05 19:16:39,550 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 15:16:51] 2025-06-05 19:16:39,550 | INFO     | collected zombie processes
[2025-06-05 15:16:51] 2025-06-05 19:16:39,551 | INFO     | will attempt to kill all subprocesses of pid=3758725
[2025-06-05 15:16:51] 2025-06-05 19:16:39,962 | INFO     | process IDs to be killed: [3758725] (in reverse order)
[2025-06-05 15:16:51] 2025-06-05 19:16:40,105 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 15:16:51] 2025-06-05 19:16:40,105 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 15:16:51] 2025-06-05 19:16:40,123 | INFO     | did not find any defunct processes belonging to 3758725
[2025-06-05 15:16:51] 2025-06-05 19:16:40,140 | INFO     | did not find any defunct processes belonging to 3758725
[2025-06-05 15:16:51] 2025-06-05 19:16:40,140 | INFO     | ready for new job
[2025-06-05 15:16:51] 2025-06-05 19:16:40,141 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 15:16:51] 2025-06-05 19:16:40,142 | INFO     | **************************************
[2025-06-05 15:16:51] 2025-06-05 19:16:40,142 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 15:16:51] 2025-06-05 19:16:40,142 | INFO     | **************************************
[2025-06-05 15:16:51] 2025-06-05 19:16:40,142 | INFO     | 
[2025-06-05 15:16:51] 2025-06-05 19:16:40,158 | INFO     | architecture information:
[2025-06-05 15:16:51] 2025-06-05 19:16:40,158 | INFO     | executing command: cat /etc/os-release
[2025-06-05 15:16:51] 2025-06-05 19:16:40,173 | INFO     | cat /etc/os-release:
[2025-06-05 15:16:51] NAME="CentOS Linux"
[2025-06-05 15:16:51] VERSION="7 (Core)"
[2025-06-05 15:16:51] ID="centos"
[2025-06-05 15:16:51] ID_LIKE="rhel fedora"
[2025-06-05 15:16:51] VERSION_ID="7"
[2025-06-05 15:16:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 15:16:51] ANSI_COLOR="0;31"
[2025-06-05 15:16:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 15:16:51] HOME_URL="https://www.centos.org/"
[2025-06-05 15:16:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 15:16:51] 
[2025-06-05 15:16:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 15:16:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 15:16:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 15:16:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 15:16:51] 
[2025-06-05 15:16:51] 2025-06-05 19:16:40,173 | INFO     | **************************************
[2025-06-05 15:16:51] 2025-06-05 19:16:40,675 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 15:16:51] 2025-06-05 19:16:40,693 | INFO     | sufficient remaining disk space (76614205440 B)
[2025-06-05 15:16:51] 2025-06-05 19:16:40,693 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 15:16:51] 2025-06-05 19:16:40,693 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 15:16:51] 2025-06-05 19:16:40,693 | INFO     | update_server=False
[2025-06-05 15:16:51] 2025-06-05 19:16:40,694 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 15:16:51] 2025-06-05 19:16:40,694 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 15:16:51] 2025-06-05 19:16:40,694 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 15:16:51] 2025-06-05 19:16:40,694 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 15:16:51] 2025-06-05 19:16:40,694 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 15:16:51] 2025-06-05 19:16:40,695 | INFO     | aborting loop
[2025-06-05 15:16:51] 2025-06-05 19:16:40,695 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 15:16:51] 2025-06-05 19:16:40,695 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 15:16:51] 2025-06-05 19:16:40,695 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 15:16:51] 2025-06-05 19:16:41,086 | INFO     | all payload control threads have been joined
[2025-06-05 15:16:51] 2025-06-05 19:16:41,372 | INFO     | all data control threads have been joined
[2025-06-05 15:16:51] 2025-06-05 19:16:41,698 | INFO     | [job] retrieve thread has finished
[2025-06-05 15:16:51] 2025-06-05 19:16:41,699 | INFO     | [job] job monitor thread has finished
[2025-06-05 15:16:51] 2025-06-05 19:16:41,749 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 15:16:51] 2025-06-05 19:16:41,879 | INFO     | [job] validate thread has finished
[2025-06-05 15:16:51] 2025-06-05 19:16:41,924 | INFO     | [data] copytool_in thread has finished
[2025-06-05 15:16:51] 2025-06-05 19:16:42,091 | INFO     | [payload] control thread has finished
[2025-06-05 15:16:51] 2025-06-05 19:16:42,191 | INFO     | all job control threads have been joined
[2025-06-05 15:16:51] 2025-06-05 19:16:42,271 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 15:16:51] 2025-06-05 19:16:42,303 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 15:16:51] 2025-06-05 19:16:42,350 | INFO     | [payload] validate_post thread has finished
[2025-06-05 15:16:51] 2025-06-05 19:16:42,376 | INFO     | [data] control thread has finished
[2025-06-05 15:16:51] 2025-06-05 19:16:42,699 | INFO     | [data] copytool_out thread has finished
[2025-06-05 15:16:51] 2025-06-05 19:16:42,869 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 15:16:51] 2025-06-05 19:16:43,039 | INFO     | [payload] failed_post thread has finished
[2025-06-05 15:16:51] 2025-06-05 19:16:43,196 | INFO     | [job] control thread has finished
[2025-06-05 15:16:51] 2025-06-05 19:16:43,530 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 15:16:51] 2025-06-05 19:16:44,535 | INFO     | [job] queue monitor thread has finished
[2025-06-05 15:16:51] 2025-06-05 19:16:44,700 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 15:16:51] 2025-06-05 19:16:46,412 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139625767360320)>', '<ExcThread(monitor, started 139625267971840)>']
[2025-06-05 15:16:51] 2025-06-05 19:16:46,725 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 15:16:51] 2025-06-05 19:16:46,725 | INFO     | [monitor] control thread has ended
[2025-06-05 15:16:51] 2025-06-05 19:16:51,437 | INFO     | all workflow threads have been joined
[2025-06-05 15:16:51] 2025-06-05 19:16:51,437 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 15:16:51] 2025-06-05 19:16:51,438 | INFO     | traces error code: 0
[2025-06-05 15:16:51] 2025-06-05 19:16:51,438 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 15:16:51] 2025-06-05 19:16:51,553 [wrapper] ==== pilot stdout END ====
[2025-06-05 15:16:51] 2025-06-05 19:16:51,555 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 15:16:51] 2025-06-05 19:16:51,557 [wrapper] pilotpid: 3752065
[2025-06-05 15:16:51] 2025-06-05 19:16:51,558 [wrapper] Pilot exit status: 0
[2025-06-05 15:16:51] 2025-06-05 19:16:51,566 [wrapper] pandaids: 6667732025
[2025-06-05 15:16:51] 2025-06-05 19:16:51,664 [wrapper] cleanup supervisor_pilot  122412 3752066
[2025-06-05 15:16:51] 2025-06-05 19:16:51,667 [wrapper] Test setup, not cleaning
[2025-06-05 15:16:51] 2025-06-05 19:16:51,669 [wrapper] apfmon messages muted
[2025-06-05 15:16:51] 2025-06-05 19:16:51,671 [wrapper] ==== wrapper stdout END ====
[2025-06-05 15:16:51] 2025-06-05 19:16:51,673 [wrapper] ==== wrapper stderr END ====
[2025-06-05 15:16:51]  *** Error codes and diagnostics ***
[2025-06-05 15:16:51]     "exeErrorCode": 0,
[2025-06-05 15:16:51]     "exeErrorDiag": "",
[2025-06-05 15:16:51]     "pilotErrorCode": 0,
[2025-06-05 15:16:51]     "pilotErrorDiag": "",
[2025-06-05 15:16:51]  *** Listing of results directory ***
[2025-06-05 15:16:51] total 414232
[2025-06-05 15:16:51] -rw-r--r--. 1 boincer umatlas    495897 May 27 19:30 pilot3.tar.gz
[2025-06-05 15:16:51] -rw-r--r--. 1 boincer umatlas      5111 May 27 20:01 queuedata.json
[2025-06-05 15:16:51] -rwx------. 1 boincer umatlas     37140 May 27 20:02 runpilot2-wrapper.sh
[2025-06-05 15:16:51] -rw-r--r--. 1 boincer umatlas       100 Jun  5 13:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 15:16:51] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  5 13:57 run_atlas
[2025-06-05 15:16:51] -rw-r--r--. 1 boincer umatlas       105 Jun  5 13:57 job.xml
[2025-06-05 15:16:51] -rw-r--r--. 2 boincer umatlas 224015241 Jun  5 13:57 EVNT.44871834._002956.pool.root.1
[2025-06-05 15:16:51] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 13:57 start_atlas.sh
[2025-06-05 15:16:51] drwxrwx--x. 2 boincer umatlas      4096 Jun  5 13:57 shared
[2025-06-05 15:16:51] -rw-r--r--. 2 boincer umatlas    508879 Jun  5 13:57 input.tar.gz
[2025-06-05 15:16:51] -rw-r--r--. 1 boincer umatlas         0 Jun  5 13:57 boinc_lockfile
[2025-06-05 15:16:51] -rw-r--r--. 1 boincer umatlas      2558 Jun  5 13:57 pandaJob.out
[2025-06-05 15:16:51] -rw-------. 1 boincer umatlas    983229 Jun  5 13:57 agis_schedconf.cvmfs.json
[2025-06-05 15:16:51] -rw-------. 1 boincer umatlas   1598969 Jun  5 13:57 agis_ddmendpoints.agis.ALL.json
[2025-06-05 15:16:51] drwx------. 4 boincer umatlas      4096 Jun  5 13:57 pilot3
[2025-06-05 15:16:51] -rw-r--r--. 1 boincer umatlas      6932 Jun  5 15:11 init_data.xml
[2025-06-05 15:16:51] -rw-------. 1 boincer umatlas        95 Jun  5 15:15 pilot_heartbeat.json
[2025-06-05 15:16:51] -rw-------. 1 boincer umatlas 194757258 Jun  5 15:16 HITS.44871837._075459.pool.root.1
[2025-06-05 15:16:51] -rw-r--r--. 1 boincer umatlas       529 Jun  5 15:16 boinc_task_state.xml
[2025-06-05 15:16:51] -rw-------. 1 boincer umatlas      1032 Jun  5 15:16 memory_monitor_summary.json
[2025-06-05 15:16:51] -rw-------. 1 boincer umatlas    319376 Jun  5 15:16 log.44871837._075459.job.log.tgz.1
[2025-06-05 15:16:51] -rw-------. 1 boincer umatlas      7687 Jun  5 15:16 heartbeat.json
[2025-06-05 15:16:51] -rw-r--r--. 1 boincer umatlas      8192 Jun  5 15:16 boinc_mmap_file
[2025-06-05 15:16:51] -rw-r--r--. 1 boincer umatlas        27 Jun  5 15:16 wrapper_checkpoint.txt
[2025-06-05 15:16:51] -rw-------. 1 boincer umatlas      4476 Jun  5 15:16 pilotlog.txt
[2025-06-05 15:16:51] -rw-------. 1 boincer umatlas    466902 Jun  5 15:16 log.44871837._075459.job.log.1
[2025-06-05 15:16:51] -rw-------. 1 boincer umatlas       357 Jun  5 15:16 output.list
[2025-06-05 15:16:51] -rw-r--r--. 1 boincer umatlas       620 Jun  5 15:16 runtime_log
[2025-06-05 15:16:51] -rw-------. 1 boincer umatlas    808960 Jun  5 15:16 result.tar.gz
[2025-06-05 15:16:51] -rw-r--r--. 1 boincer umatlas      8654 Jun  5 15:16 runtime_log.err
[2025-06-05 15:16:51] -rw-------. 1 boincer umatlas       652 Jun  5 15:16 hv5KDmVQJe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmQjaKDm4mJ2Un.diag
[2025-06-05 15:16:51] -rw-r--r--. 1 boincer umatlas     22260 Jun  5 15:16 stderr.txt
[2025-06-05 15:16:51] HITS file was successfully produced:
[2025-06-05 15:16:51] -rw-------. 1 boincer umatlas 194757258 Jun  5 15:16 shared/HITS.pool.root.1
[2025-06-05 15:16:51]  *** Contents of shared directory: ***
[2025-06-05 15:16:51] total 410272
[2025-06-05 15:16:51] -rw-r--r--. 2 boincer umatlas 224015241 Jun  5 13:57 ATLAS.root_0
[2025-06-05 15:16:51] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 13:57 start_atlas.sh
[2025-06-05 15:16:51] -rw-r--r--. 2 boincer umatlas    508879 Jun  5 13:57 input.tar.gz
[2025-06-05 15:16:51] -rw-------. 1 boincer umatlas 194757258 Jun  5 15:16 HITS.pool.root.1
[2025-06-05 15:16:51] -rw-------. 1 boincer umatlas    808960 Jun  5 15:16 result.tar.gz
15:16:53 (3748490): run_atlas exited; CPU time 34990.860844
15:16:53 (3748490): called boinc_finish(0)

</stderr_txt>
]]>

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