Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:20:00 (2366224): wrapper (7.7.26015): starting
13:20:00 (2366224): wrapper: running run_atlas (--nthreads 10)
[2025-06-05 13:20:00] Arguments: --nthreads 10
[2025-06-05 13:20:00] Threads: 10
[2025-06-05 13:20:00] Checking for CVMFS
[2025-06-05 13:20:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 13:20:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 13:20:00] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 13:20:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 13:20:01] 2.12.6.0 11904 135364 309092 146827 3 185 22631367 32935936 15752 130560 2 381777114 99.626 400491891 25245 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-05 13:20:01] CVMFS is ok
[2025-06-05 13:20:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 13:20:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 13:20:01] Further information can be found at the LHC@home message board.
[2025-06-05 13:20:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 13:20:01] Checking for apptainer binary...
[2025-06-05 13:20:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 13:20:01] Running /usr/bin/apptainer --version
[2025-06-05 13:20:01] apptainer version 1.4.1-1.el9
[2025-06-05 13:20:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 13:20:01] c-6-3.aglt2.org
[2025-06-05 13:20:01] apptainer works
[2025-06-05 13:20:01] Set ATHENA_PROC_NUMBER=10
[2025-06-05 13:20:01] Set ATHENA_CORE_NUMBER=10
[2025-06-05 13:20:01] Starting ATLAS job with PandaID=6669650411
[2025-06-05 13:20:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 15:33:09]  *** The last 200 lines of the pilot log: ***
[2025-06-05 15:33:09] 2025-06-05 19:32:52,531 | INFO     | total number of processed events: 400 (read)
[2025-06-05 15:33:09] 2025-06-05 19:32:52,545 | INFO     | executing command: lscpu
[2025-06-05 15:33:09] 2025-06-05 19:32:52,610 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 15:33:09] 2025-06-05 19:32:53,097 | INFO     | monitor loop #552: job 0:6669650411 is in state 'finished'
[2025-06-05 15:33:09] 2025-06-05 19:32:53,098 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 15:33:09] 2025-06-05 19:32:55,600 | INFO     | monitor loop #553: job 0:6669650411 is in state 'finished'
[2025-06-05 15:33:09] 2025-06-05 19:32:55,600 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 15:33:09] 2025-06-05 19:32:56,321 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 15:33:09] 2025-06-05 19:32:56,321 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6669650411/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 15:33:09] 2025-06-05 19:32:56,322 | INFO     | extracted standard info from prmon json
[2025-06-05 15:33:09] 2025-06-05 19:32:56,322 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 15:33:09] 2025-06-05 19:32:56,322 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 15:33:09] 2025-06-05 19:32:56,323 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 15:33:09] 2025-06-05 19:32:56,323 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 15:33:09] 2025-06-05 19:32:56,326 | INFO     | fitting pss+swap vs Time
[2025-06-05 15:33:09] 2025-06-05 19:32:56,327 | INFO     | sum of square deviations: 681201856.4307704
[2025-06-05 15:33:09] 2025-06-05 19:32:56,327 | INFO     | sum of deviations: -16997509247.8
[2025-06-05 15:33:09] 2025-06-05 19:32:56,328 | INFO     | mean x: 1749147972.523077
[2025-06-05 15:33:09] 2025-06-05 19:32:56,328 | INFO     | mean y: 2333703.1
[2025-06-05 15:33:09] 2025-06-05 19:32:56,328 | INFO     | -- intersect: 43647486102.58286
[2025-06-05 15:33:09] 2025-06-05 19:32:56,328 | INFO     | intersect: 43647486102.58286
[2025-06-05 15:33:09] 2025-06-05 19:32:56,328 | INFO     | chi2: 1.9514556195945691
[2025-06-05 15:33:09] 2025-06-05 19:32:56,329 | INFO     | sum of square deviations: 605582748.9280019
[2025-06-05 15:33:09] 2025-06-05 19:32:56,329 | INFO     | sum of deviations: -13029014099.271997
[2025-06-05 15:33:09] 2025-06-05 19:32:56,329 | INFO     | mean x: 1749147820.024
[2025-06-05 15:33:09] 2025-06-05 19:32:56,329 | INFO     | mean y: 2341612.424
[2025-06-05 15:33:09] 2025-06-05 19:32:56,330 | INFO     | -- intersect: 37634971751.155136
[2025-06-05 15:33:09] 2025-06-05 19:32:56,330 | INFO     | intersect: 37634971751.155136
[2025-06-05 15:33:09] 2025-06-05 19:32:56,330 | INFO     | chi2: 1.9353936438015789
[2025-06-05 15:33:09] 2025-06-05 19:32:56,330 | INFO     | current chi2=1.9353936438015789 (change=0.8230766629644028 %)
[2025-06-05 15:33:09] 2025-06-05 19:32:56,330 | INFO     | right removable region: 124
[2025-06-05 15:33:09] 2025-06-05 19:32:56,330 | INFO     | sum of square deviations: 605580918.9280019
[2025-06-05 15:33:09] 2025-06-05 19:32:56,331 | INFO     | sum of deviations: -36248921570.85599
[2025-06-05 15:33:09] 2025-06-05 19:32:56,331 | INFO     | mean x: 1749148125.024
[2025-06-05 15:33:09] 2025-06-05 19:32:56,331 | INFO     | mean y: 2371966.952
[2025-06-05 15:33:09] 2025-06-05 19:32:56,332 | INFO     | -- intersect: 104703050634.37717
[2025-06-05 15:33:09] 2025-06-05 19:32:56,332 | INFO     | intersect: 104703050634.37717
[2025-06-05 15:33:09] 2025-06-05 19:32:56,332 | INFO     | chi2: 0.37187931687726405
[2025-06-05 15:33:09] 2025-06-05 19:32:56,332 | INFO     | current chi2=0.37187931687726405 (change=80.94349094372308 %)
[2025-06-05 15:33:09] 2025-06-05 19:32:56,332 | INFO     | sum of square deviations: 535774043.92500097
[2025-06-05 15:33:09] 2025-06-05 19:32:56,333 | INFO     | sum of deviations: -34752999126.075
[2025-06-05 15:33:09] 2025-06-05 19:32:56,333 | INFO     | mean x: 1749148277.525
[2025-06-05 15:33:09] 2025-06-05 19:32:56,333 | INFO     | mean y: 2368545.525
[2025-06-05 15:33:09] 2025-06-05 19:32:56,333 | INFO     | -- intersect: 113460923041.51546
[2025-06-05 15:33:09] 2025-06-05 19:32:56,333 | INFO     | intersect: 113460923041.51546
[2025-06-05 15:33:09] 2025-06-05 19:32:56,334 | INFO     | chi2: 0.32548969588529303
[2025-06-05 15:33:09] 2025-06-05 19:32:56,334 | INFO     | current chi2=0.32548969588529303 (change=12.474375122960002 %)
[2025-06-05 15:33:09] 2025-06-05 19:32:56,334 | INFO     | left removable region: 20
[2025-06-05 15:33:09] 2025-06-05 19:32:56,334 | INFO     | sum of square deviations: 348755851.9134616
[2025-06-05 15:33:09] 2025-06-05 19:32:56,335 | INFO     | sum of deviations: -20954530019.59616
[2025-06-05 15:33:09] 2025-06-05 19:32:56,335 | INFO     | mean x: 1749148399.5288463
[2025-06-05 15:33:09] 2025-06-05 19:32:56,335 | INFO     | mean y: 2354025.8653846155
[2025-06-05 15:33:09] 2025-06-05 19:32:56,335 | INFO     | -- intersect: 105097601734.4273
[2025-06-05 15:33:09] 2025-06-05 19:32:56,335 | INFO     | intersect: 105097601734.4273
[2025-06-05 15:33:09] 2025-06-05 19:32:56,336 | INFO     | chi2: 0.29578977264385165
[2025-06-05 15:33:09] 2025-06-05 19:32:56,336 | INFO     | -- intersect: 105097601734.4273
[2025-06-05 15:33:09] 2025-06-05 19:32:56,336 | INFO     | current memory leak: -60.08 B/s (using 104 data points, chi2=0.30)
[2025-06-05 15:33:09] 2025-06-05 19:32:56,336 | INFO     | ..............................
[2025-06-05 15:33:09] 2025-06-05 19:32:56,337 | INFO     | . Timing measurements:
[2025-06-05 15:33:09] 2025-06-05 19:32:56,337 | INFO     | . get job = 0 s
[2025-06-05 15:33:09] 2025-06-05 19:32:56,337 | INFO     | . initial setup = 3 s
[2025-06-05 15:33:09] 2025-06-05 19:32:56,337 | INFO     | . payload setup = 6 s
[2025-06-05 15:33:09] 2025-06-05 19:32:56,337 | INFO     | . stage-in = 0 s
[2025-06-05 15:33:09] 2025-06-05 19:32:56,337 | INFO     | . payload execution = 7931 s
[2025-06-05 15:33:09] 2025-06-05 19:32:56,337 | INFO     | . stage-out = 0 s
[2025-06-05 15:33:09] 2025-06-05 19:32:56,337 | INFO     | . log creation = 0 s
[2025-06-05 15:33:09] 2025-06-05 19:32:56,337 | INFO     | ..............................
[2025-06-05 15:33:09] 2025-06-05 19:32:56,850 | INFO     | 
[2025-06-05 15:33:09] 2025-06-05 19:32:56,850 | INFO     | job summary report
[2025-06-05 15:33:09] 2025-06-05 19:32:56,850 | INFO     | --------------------------------------------------
[2025-06-05 15:33:09] 2025-06-05 19:32:56,851 | INFO     | PanDA job id: 6669650411
[2025-06-05 15:33:09] 2025-06-05 19:32:56,851 | INFO     | task id: 44871837
[2025-06-05 15:33:09] 2025-06-05 19:32:56,851 | INFO     | errors: (none)
[2025-06-05 15:33:09] 2025-06-05 19:32:56,851 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 15:33:09] 2025-06-05 19:32:56,851 | INFO     | pilot state: finished 
[2025-06-05 15:33:09] 2025-06-05 19:32:56,851 | INFO     | transexitcode: 0
[2025-06-05 15:33:09] 2025-06-05 19:32:56,851 | INFO     | exeerrorcode: 0
[2025-06-05 15:33:09] 2025-06-05 19:32:56,851 | INFO     | exeerrordiag: 
[2025-06-05 15:33:09] 2025-06-05 19:32:56,851 | INFO     | exitcode: 0
[2025-06-05 15:33:09] 2025-06-05 19:32:56,852 | INFO     | exitmsg: OK
[2025-06-05 15:33:09] 2025-06-05 19:32:56,852 | INFO     | cpuconsumptiontime: 61599 s
[2025-06-05 15:33:09] 2025-06-05 19:32:56,852 | INFO     | nevents: 400
[2025-06-05 15:33:09] 2025-06-05 19:32:56,852 | INFO     | neventsw: 0
[2025-06-05 15:33:09] 2025-06-05 19:32:56,852 | INFO     | pid: 2382800
[2025-06-05 15:33:09] 2025-06-05 19:32:56,852 | INFO     | pgrp: 2382800
[2025-06-05 15:33:09] 2025-06-05 19:32:56,852 | INFO     | corecount: 10
[2025-06-05 15:33:09] 2025-06-05 19:32:56,852 | INFO     | event service: False
[2025-06-05 15:33:09] 2025-06-05 19:32:56,852 | INFO     | sizes: {0: 2397340, 4: 2397546, 11: 2397574, 7941: 2425307, 7943: 2434248, 7945: 2434304, 7949: 2434602}
[2025-06-05 15:33:09] 2025-06-05 19:32:56,852 | INFO     | --------------------------------------------------
[2025-06-05 15:33:09] 2025-06-05 19:32:56,853 | INFO     | 
[2025-06-05 15:33:09] 2025-06-05 19:32:56,853 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 15:33:09] 2025-06-05 19:32:56,870 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 15:33:09] 2025-06-05 19:32:56,871 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 15:33:09] 2025-06-05 19:32:56,871 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 15:33:09] 2025-06-05 19:32:56,871 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 15:33:09] 2025-06-05 19:32:56,871 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 15:33:09] 2025-06-05 19:32:56,871 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 15:33:09] 2025-06-05 19:32:56,871 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 15:33:09] 2025-06-05 19:32:56,871 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 15:33:09] 2025-06-05 19:32:56,872 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 15:33:09] 2025-06-05 19:32:56,872 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 15:33:09] 2025-06-05 19:32:56,872 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 15:33:09] 2025-06-05 19:32:56,872 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 15:33:09] 2025-06-05 19:32:56,872 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 15:33:09] 2025-06-05 19:32:56,872 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 15:33:09] 2025-06-05 19:32:56,872 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 15:33:09] 2025-06-05 19:32:56,872 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 15:33:09] 2025-06-05 19:32:56,872 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 15:33:09] 2025-06-05 19:32:56,873 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 15:33:09] 2025-06-05 19:32:56,873 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 15:33:09] 2025-06-05 19:32:56,873 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 15:33:09] 2025-06-05 19:32:56,873 | INFO     | job 6669650411 has completed (purged errors)
[2025-06-05 15:33:09] 2025-06-05 19:32:56,873 | INFO     | overall cleanup function is called
[2025-06-05 15:33:09] 2025-06-05 19:32:57,881 | INFO     | --- collectZombieJob: --- 10, [2382800]
[2025-06-05 15:33:09] 2025-06-05 19:32:57,881 | INFO     | zombie collector waiting for pid 2382800
[2025-06-05 15:33:09] 2025-06-05 19:32:57,881 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 15:33:09] 2025-06-05 19:32:57,882 | INFO     | collected zombie processes
[2025-06-05 15:33:09] 2025-06-05 19:32:57,882 | INFO     | will attempt to kill all subprocesses of pid=2382800
[2025-06-05 15:33:09] 2025-06-05 19:32:58,266 | INFO     | process IDs to be killed: [2382800] (in reverse order)
[2025-06-05 15:33:09] 2025-06-05 19:32:58,379 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 15:33:09] 2025-06-05 19:32:58,380 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 15:33:09] 2025-06-05 19:32:58,394 | INFO     | did not find any defunct processes belonging to 2382800
[2025-06-05 15:33:09] 2025-06-05 19:32:58,409 | INFO     | did not find any defunct processes belonging to 2382800
[2025-06-05 15:33:09] 2025-06-05 19:32:58,410 | INFO     | ready for new job
[2025-06-05 15:33:09] 2025-06-05 19:32:58,410 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 15:33:09] 2025-06-05 19:32:58,412 | INFO     | **************************************
[2025-06-05 15:33:09] 2025-06-05 19:32:58,412 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 15:33:09] 2025-06-05 19:32:58,412 | INFO     | **************************************
[2025-06-05 15:33:09] 2025-06-05 19:32:58,412 | INFO     | 
[2025-06-05 15:33:09] 2025-06-05 19:32:58,427 | INFO     | architecture information:
[2025-06-05 15:33:09] 2025-06-05 19:32:58,427 | INFO     | executing command: cat /etc/os-release
[2025-06-05 15:33:09] 2025-06-05 19:32:58,441 | INFO     | cat /etc/os-release:
[2025-06-05 15:33:09] NAME="CentOS Linux"
[2025-06-05 15:33:09] VERSION="7 (Core)"
[2025-06-05 15:33:09] ID="centos"
[2025-06-05 15:33:09] ID_LIKE="rhel fedora"
[2025-06-05 15:33:09] VERSION_ID="7"
[2025-06-05 15:33:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 15:33:09] ANSI_COLOR="0;31"
[2025-06-05 15:33:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 15:33:09] HOME_URL="https://www.centos.org/"
[2025-06-05 15:33:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 15:33:09] 
[2025-06-05 15:33:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 15:33:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 15:33:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 15:33:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 15:33:09] 
[2025-06-05 15:33:09] 2025-06-05 19:32:58,442 | INFO     | **************************************
[2025-06-05 15:33:09] 2025-06-05 19:32:58,944 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 15:33:09] 2025-06-05 19:32:58,963 | INFO     | sufficient remaining disk space (76562825216 B)
[2025-06-05 15:33:09] 2025-06-05 19:32:58,964 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 15:33:09] 2025-06-05 19:32:58,964 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 15:33:09] 2025-06-05 19:32:58,964 | INFO     | update_server=False
[2025-06-05 15:33:09] 2025-06-05 19:32:58,964 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 15:33:09] 2025-06-05 19:32:58,964 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 15:33:09] 2025-06-05 19:32:58,965 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 15:33:09] 2025-06-05 19:32:58,965 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 15:33:09] 2025-06-05 19:32:58,965 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 15:33:09] 2025-06-05 19:32:58,965 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 15:33:09] 2025-06-05 19:32:59,108 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 15:33:09] 2025-06-05 19:32:59,108 | INFO     | aborting loop
[2025-06-05 15:33:09] 2025-06-05 19:32:59,230 | INFO     | all payload control threads have been joined
[2025-06-05 15:33:09] 2025-06-05 19:32:59,470 | INFO     | all data control threads have been joined
[2025-06-05 15:33:09] 2025-06-05 19:32:59,538 | INFO     | all job control threads have been joined
[2025-06-05 15:33:09] 2025-06-05 19:32:59,970 | INFO     | [job] retrieve thread has finished
[2025-06-05 15:33:09] 2025-06-05 19:33:00,114 | INFO     | [job] job monitor thread has finished
[2025-06-05 15:33:09] 2025-06-05 19:33:00,235 | INFO     | [payload] control thread has finished
[2025-06-05 15:33:09] 2025-06-05 19:33:00,303 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 15:33:09] 2025-06-05 19:33:00,475 | INFO     | [data] control thread has finished
[2025-06-05 15:33:09] 2025-06-05 19:33:00,543 | INFO     | [job] control thread has finished
[2025-06-05 15:33:09] 2025-06-05 19:33:00,584 | INFO     | [data] copytool_in thread has finished
[2025-06-05 15:33:09] 2025-06-05 19:33:00,587 | INFO     | [payload] validate_post thread has finished
[2025-06-05 15:33:09] 2025-06-05 19:33:00,713 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 15:33:09] 2025-06-05 19:33:00,855 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 15:33:09] 2025-06-05 19:33:00,954 | INFO     | [payload] failed_post thread has finished
[2025-06-05 15:33:09] 2025-06-05 19:33:01,208 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 15:33:09] 2025-06-05 19:33:01,269 | INFO     | [job] validate thread has finished
[2025-06-05 15:33:09] 2025-06-05 19:33:01,430 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 15:33:09] 2025-06-05 19:33:01,456 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 15:33:09] 2025-06-05 19:33:02,308 | INFO     | [data] copytool_out thread has finished
[2025-06-05 15:33:09] 2025-06-05 19:33:02,462 | INFO     | [job] queue monitor thread has finished
[2025-06-05 15:33:09] 2025-06-05 19:33:02,971 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 15:33:09] 2025-06-05 19:33:04,313 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140656669185856)>', '<ExcThread(monitor, started 140655816865536)>']
[2025-06-05 15:33:09] 2025-06-05 19:33:04,996 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 15:33:09] 2025-06-05 19:33:04,996 | INFO     | [monitor] control thread has ended
[2025-06-05 15:33:09] 2025-06-05 19:33:09,338 | INFO     | all workflow threads have been joined
[2025-06-05 15:33:09] 2025-06-05 19:33:09,338 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 15:33:09] 2025-06-05 19:33:09,339 | INFO     | traces error code: 0
[2025-06-05 15:33:09] 2025-06-05 19:33:09,339 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 15:33:09] 2025-06-05 19:33:09,484 [wrapper] ==== pilot stdout END ====
[2025-06-05 15:33:09] 2025-06-05 19:33:09,487 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 15:33:09] 2025-06-05 19:33:09,489 [wrapper] pilotpid: 2371831
[2025-06-05 15:33:09] 2025-06-05 19:33:09,491 [wrapper] Pilot exit status: 0
[2025-06-05 15:33:09] 2025-06-05 19:33:09,500 [wrapper] pandaids: 6669650411
[2025-06-05 15:33:09] 2025-06-05 19:33:09,558 [wrapper] cleanup supervisor_pilot 2971418 2371832
[2025-06-05 15:33:09] 2025-06-05 19:33:09,560 [wrapper] Test setup, not cleaning
[2025-06-05 15:33:09] 2025-06-05 19:33:09,562 [wrapper] apfmon messages muted
[2025-06-05 15:33:09] 2025-06-05 19:33:09,564 [wrapper] ==== wrapper stdout END ====
[2025-06-05 15:33:09] 2025-06-05 19:33:09,566 [wrapper] ==== wrapper stderr END ====
[2025-06-05 15:33:09]  *** Error codes and diagnostics ***
[2025-06-05 15:33:09]     "exeErrorCode": 0,
[2025-06-05 15:33:09]     "exeErrorDiag": "",
[2025-06-05 15:33:09]     "pilotErrorCode": 0,
[2025-06-05 15:33:09]     "pilotErrorDiag": "",
[2025-06-05 15:33:09]  *** Listing of results directory ***
[2025-06-05 15:33:09] total 418848
[2025-06-05 15:33:09] -rw-r--r--. 1 boincer umatlas    495897 May 29 05:21 pilot3.tar.gz
[2025-06-05 15:33:09] -rwx------. 1 boincer umatlas     37140 May 29 05:21 runpilot2-wrapper.sh
[2025-06-05 15:33:09] -rw-r--r--. 1 boincer umatlas      5111 May 29 05:21 queuedata.json
[2025-06-05 15:33:09] -rw-r--r--. 1 boincer umatlas       100 Jun  5 13:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 15:33:09] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  5 13:20 run_atlas
[2025-06-05 15:33:09] -rw-r--r--. 1 boincer umatlas       105 Jun  5 13:20 job.xml
[2025-06-05 15:33:09] -rw-r--r--. 2 boincer umatlas 224150626 Jun  5 13:20 EVNT.44871834._002247.pool.root.1
[2025-06-05 15:33:09] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 13:20 start_atlas.sh
[2025-06-05 15:33:09] drwxrwx--x. 2 boincer umatlas      4096 Jun  5 13:20 shared
[2025-06-05 15:33:09] -rw-r--r--. 2 boincer umatlas    508873 Jun  5 13:20 input.tar.gz
[2025-06-05 15:33:09] -rw-r--r--. 1 boincer umatlas         0 Jun  5 13:20 boinc_lockfile
[2025-06-05 15:33:09] -rw-r--r--. 1 boincer umatlas      2558 Jun  5 13:20 pandaJob.out
[2025-06-05 15:33:09] -rw-------. 1 boincer umatlas    983229 Jun  5 13:20 agis_schedconf.cvmfs.json
[2025-06-05 15:33:09] -rw-------. 1 boincer umatlas   1598969 Jun  5 13:20 agis_ddmendpoints.agis.ALL.json
[2025-06-05 15:33:09] drwx------. 4 boincer umatlas      4096 Jun  5 13:20 pilot3
[2025-06-05 15:33:09] -rw-r--r--. 1 boincer umatlas      6657 Jun  5 15:29 init_data.xml
[2025-06-05 15:33:09] -rw-------. 1 boincer umatlas 198743593 Jun  5 15:32 HITS.44871837._098139.pool.root.1
[2025-06-05 15:33:09] -rw-------. 1 boincer umatlas        95 Jun  5 15:32 pilot_heartbeat.json
[2025-06-05 15:33:09] -rw-r--r--. 1 boincer umatlas       530 Jun  5 15:32 boinc_task_state.xml
[2025-06-05 15:33:09] -rw-------. 1 boincer umatlas      1041 Jun  5 15:32 memory_monitor_summary.json
[2025-06-05 15:33:09] -rw-------. 1 boincer umatlas    355708 Jun  5 15:32 log.44871837._098139.job.log.tgz.1
[2025-06-05 15:33:09] -rw-r--r--. 1 boincer umatlas      8192 Jun  5 15:32 boinc_mmap_file
[2025-06-05 15:33:09] -rw-r--r--. 1 boincer umatlas        27 Jun  5 15:32 wrapper_checkpoint.txt
[2025-06-05 15:33:09] -rw-------. 1 boincer umatlas      7720 Jun  5 15:32 heartbeat.json
[2025-06-05 15:33:09] -rw-------. 1 boincer umatlas      4476 Jun  5 15:33 pilotlog.txt
[2025-06-05 15:33:09] -rw-------. 1 boincer umatlas    734287 Jun  5 15:33 log.44871837._098139.job.log.1
[2025-06-05 15:33:09] -rw-------. 1 boincer umatlas       357 Jun  5 15:33 output.list
[2025-06-05 15:33:09] -rw-r--r--. 1 boincer umatlas       620 Jun  5 15:33 runtime_log
[2025-06-05 15:33:09] -rw-------. 1 boincer umatlas   1105920 Jun  5 15:33 result.tar.gz
[2025-06-05 15:33:09] -rw-------. 1 boincer umatlas       650 Jun  5 15:33 WBMKDmjdoe7n9Rq4apOajLDm4fhM0noT9bVof3QYDmZzUKDm0rXV2n.diag
[2025-06-05 15:33:09] -rw-r--r--. 1 boincer umatlas      8646 Jun  5 15:33 runtime_log.err
[2025-06-05 15:33:09] -rw-r--r--. 1 boincer umatlas     21159 Jun  5 15:33 stderr.txt
[2025-06-05 15:33:09] HITS file was successfully produced:
[2025-06-05 15:33:09] -rw-------. 1 boincer umatlas 198743593 Jun  5 15:32 shared/HITS.pool.root.1
[2025-06-05 15:33:09]  *** Contents of shared directory: ***
[2025-06-05 15:33:09] total 414588
[2025-06-05 15:33:09] -rw-r--r--. 2 boincer umatlas 224150626 Jun  5 13:20 ATLAS.root_0
[2025-06-05 15:33:09] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 13:20 start_atlas.sh
[2025-06-05 15:33:09] -rw-r--r--. 2 boincer umatlas    508873 Jun  5 13:20 input.tar.gz
[2025-06-05 15:33:09] -rw-------. 1 boincer umatlas 198743593 Jun  5 15:32 HITS.pool.root.1
[2025-06-05 15:33:09] -rw-------. 1 boincer umatlas   1105920 Jun  5 15:33 result.tar.gz
15:33:10 (2366224): run_atlas exited; CPU time 61870.342743
15:33:10 (2366224): called boinc_finish(0)

</stderr_txt>
]]>

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