Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:20:00 (2618063): wrapper (7.7.26015): starting
13:20:00 (2618063): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 13:20:00] Arguments: --nthreads 8
[2025-06-05 13:20:00] Threads: 8
[2025-06-05 13:20:00] Checking for CVMFS
[2025-06-05 13:20:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 13:20:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 13:20:00] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 13:20:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 13:20:01] 2.12.6.0 216356 996 167156 146827 1 222 39011963 40960001 32886 16776704 0 14014672 99.740 10249866 42598 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-05 13:20:01] CVMFS is ok
[2025-06-05 13:20:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 13:20:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 13:20:01] Further information can be found at the LHC@home message board.
[2025-06-05 13:20:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 13:20:01] Checking for apptainer binary...
[2025-06-05 13:20:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 13:20:01] Running /usr/bin/apptainer --version
[2025-06-05 13:20:01] apptainer version 1.4.1-1.el9
[2025-06-05 13:20:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 13:20:01] c8-16-1.aglt2.org
[2025-06-05 13:20:01] apptainer works
[2025-06-05 13:20:01] Set ATHENA_PROC_NUMBER=8
[2025-06-05 13:20:01] Set ATHENA_CORE_NUMBER=8
[2025-06-05 13:20:01] Starting ATLAS job with PandaID=6669442982
[2025-06-05 13:20:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 14:28:49]  *** The last 200 lines of the pilot log: ***
[2025-06-05 14:28:49]  guid=b5e022f4-4817-4909-8b90-a024abe02ab3
[2025-06-05 14:28:49]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-05 14:28:49]  is_altstaged=None
[2025-06-05 14:28:49]  is_tar=False
[2025-06-05 14:28:49]  lfn=log.44871837._096252.job.log.tgz.1
[2025-06-05 14:28:49]  mtime=0
[2025-06-05 14:28:49]  protocol_id=None
[2025-06-05 14:28:49]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-05 14:28:49]  replicas=None
[2025-06-05 14:28:49]  scope=mc23_13p6TeV
[2025-06-05 14:28:49]  status=None
[2025-06-05 14:28:49]  status_code=0
[2025-06-05 14:28:49]  storage_token=
[2025-06-05 14:28:49]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6669442982/log.44871837._096252.job.log.tgz.1
[2025-06-05 14:28:49]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d4/73/log.44871837._096252.job.log.tgz.1
[2025-06-05 14:28:49]  workdir=None
[2025-06-05 14:28:49] ]
[2025-06-05 14:28:49] 2025-06-05 18:28:22,148 | INFO     | transferring file log.44871837._096252.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6669442982/log.44871837._096252.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-05 14:28:49] 2025-06-05 18:28:22,149 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6669442982/log.44871837._096252.job.log.tgz.1 /tmp/boinchome/slots/1/log.44871837._096252.job
[2025-06-05 14:28:49] 2025-06-05 18:28:22,161 | INFO     | adding to output.list: log.44871837._096252.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d4/73/log.44871837._096252.job.log.tg
[2025-06-05 14:28:49] 2025-06-05 18:28:22,162 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-05 14:28:49] 2025-06-05 18:28:22,162 | INFO     | summary of transferred files:
[2025-06-05 14:28:49] 2025-06-05 18:28:22,162 | INFO     |  -- lfn=log.44871837._096252.job.log.tgz.1, status_code=0, status=transferred
[2025-06-05 14:28:49] 2025-06-05 18:28:22,162 | INFO     | stage-out finished correctly
[2025-06-05 14:28:49] 2025-06-05 18:28:22,212 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-05 14:28:49] 2025-06-05 18:28:24,043 | INFO     | job 6669442982 has state=finished
[2025-06-05 14:28:49] 2025-06-05 18:28:24,043 | INFO     | preparing for final server update for job 6669442982 in state='finished'
[2025-06-05 14:28:49] 2025-06-05 18:28:24,044 | INFO     | this job has now completed (state=finished)
[2025-06-05 14:28:49] 2025-06-05 18:28:24,044 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-05 14:28:49] 2025-06-05 18:28:24,044 | INFO     | log transfer has been attempted: DONE
[2025-06-05 14:28:49] 2025-06-05 18:28:24,044 | INFO     | job 6669442982 has finished - writing final server update
[2025-06-05 14:28:49] 2025-06-05 18:28:24,044 | INFO     | total number of processed events: 400 (read)
[2025-06-05 14:28:49] 2025-06-05 18:28:24,052 | INFO     | executing command: lscpu
[2025-06-05 14:28:49] 2025-06-05 18:28:24,116 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 14:28:49] 2025-06-05 18:28:24,231 | WARNING  | process 2641814 can no longer be monitored (due to stat problems) - aborting
[2025-06-05 14:28:49] 2025-06-05 18:28:24,231 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6669442982/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 14:28:49] 2025-06-05 18:28:24,618 | INFO     | number of running child processes to parent process 2641814: 1
[2025-06-05 14:28:49] 2025-06-05 18:28:24,619 | INFO     | maximum number of monitored processes: 6
[2025-06-05 14:28:49] 2025-06-05 18:28:27,121 | INFO     | monitor loop #293: job 0:6669442982 is in state 'finished'
[2025-06-05 14:28:49] 2025-06-05 18:28:27,121 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 14:28:49] 2025-06-05 18:28:27,988 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-05 14:28:49] 2025-06-05 18:28:27,989 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6669442982/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 14:28:49] 2025-06-05 18:28:27,989 | INFO     | extracted standard info from prmon json
[2025-06-05 14:28:49] 2025-06-05 18:28:27,989 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 14:28:49] 2025-06-05 18:28:27,989 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 14:28:49] 2025-06-05 18:28:27,989 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 14:28:49] 2025-06-05 18:28:27,990 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 14:28:49] 2025-06-05 18:28:27,990 | INFO     | fitting pss+swap vs Time
[2025-06-05 14:28:49] 2025-06-05 18:28:27,991 | INFO     | sum of square deviations: 66959395.0
[2025-06-05 14:28:49] 2025-06-05 18:28:27,991 | INFO     | sum of deviations: 49398105.000000104
[2025-06-05 14:28:49] 2025-06-05 18:28:27,991 | INFO     | mean x: 1749146141.5
[2025-06-05 14:28:49] 2025-06-05 18:28:27,991 | INFO     | mean y: 2226851.6666666665
[2025-06-05 14:28:49] 2025-06-05 18:28:27,991 | INFO     | -- intersect: -1288174663.4330747
[2025-06-05 14:28:49] 2025-06-05 18:28:27,991 | INFO     | intersect: -1288174663.4330747
[2025-06-05 14:28:49] 2025-06-05 18:28:27,991 | INFO     | chi2: 0.03093683513516412
[2025-06-05 14:28:49] 2025-06-05 18:28:27,991 | INFO     | -- intersect: -1288174663.4330747
[2025-06-05 14:28:49] 2025-06-05 18:28:27,991 | INFO     | current memory leak: 0.74 B/s (using 60 data points, chi2=0.03)
[2025-06-05 14:28:49] 2025-06-05 18:28:27,991 | INFO     | ..............................
[2025-06-05 14:28:49] 2025-06-05 18:28:27,991 | INFO     | . Timing measurements:
[2025-06-05 14:28:49] 2025-06-05 18:28:27,991 | INFO     | . get job = 0 s
[2025-06-05 14:28:49] 2025-06-05 18:28:27,991 | INFO     | . initial setup = 2 s
[2025-06-05 14:28:49] 2025-06-05 18:28:27,991 | INFO     | . payload setup = 6 s
[2025-06-05 14:28:49] 2025-06-05 18:28:27,991 | INFO     | . stage-in = 0 s
[2025-06-05 14:28:49] 2025-06-05 18:28:27,991 | INFO     | . payload execution = 4065 s
[2025-06-05 14:28:49] 2025-06-05 18:28:27,992 | INFO     | . stage-out = 0 s
[2025-06-05 14:28:49] 2025-06-05 18:28:27,992 | INFO     | . log creation = 0 s
[2025-06-05 14:28:49] 2025-06-05 18:28:27,992 | INFO     | ..............................
[2025-06-05 14:28:49] 2025-06-05 18:28:28,029 | INFO     | 
[2025-06-05 14:28:49] 2025-06-05 18:28:28,029 | INFO     | job summary report
[2025-06-05 14:28:49] 2025-06-05 18:28:28,029 | INFO     | --------------------------------------------------
[2025-06-05 14:28:49] 2025-06-05 18:28:28,029 | INFO     | PanDA job id: 6669442982
[2025-06-05 14:28:49] 2025-06-05 18:28:28,029 | INFO     | task id: 44871837
[2025-06-05 14:28:49] 2025-06-05 18:28:28,029 | INFO     | errors: (none)
[2025-06-05 14:28:49] 2025-06-05 18:28:28,029 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 14:28:49] 2025-06-05 18:28:28,029 | INFO     | pilot state: finished 
[2025-06-05 14:28:49] 2025-06-05 18:28:28,029 | INFO     | transexitcode: 0
[2025-06-05 14:28:49] 2025-06-05 18:28:28,029 | INFO     | exeerrorcode: 0
[2025-06-05 14:28:49] 2025-06-05 18:28:28,029 | INFO     | exeerrordiag: 
[2025-06-05 14:28:49] 2025-06-05 18:28:28,029 | INFO     | exitcode: 0
[2025-06-05 14:28:49] 2025-06-05 18:28:28,029 | INFO     | exitmsg: OK
[2025-06-05 14:28:49] 2025-06-05 18:28:28,029 | INFO     | cpuconsumptiontime: 28040 s
[2025-06-05 14:28:49] 2025-06-05 18:28:28,029 | INFO     | nevents: 400
[2025-06-05 14:28:49] 2025-06-05 18:28:28,029 | INFO     | neventsw: 0
[2025-06-05 14:28:49] 2025-06-05 18:28:28,029 | INFO     | pid: 2641814
[2025-06-05 14:28:49] 2025-06-05 18:28:28,029 | INFO     | pgrp: 2641814
[2025-06-05 14:28:49] 2025-06-05 18:28:28,029 | INFO     | corecount: 8
[2025-06-05 14:28:49] 2025-06-05 18:28:28,029 | INFO     | event service: False
[2025-06-05 14:28:49] 2025-06-05 18:28:28,029 | INFO     | sizes: {0: 2397392, 4: 2397598, 11: 2397626, 4075: 2432428, 4081: 2432542}
[2025-06-05 14:28:49] 2025-06-05 18:28:28,029 | INFO     | --------------------------------------------------
[2025-06-05 14:28:49] 2025-06-05 18:28:28,029 | INFO     | 
[2025-06-05 14:28:49] 2025-06-05 18:28:28,029 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-05 14:28:49] 2025-06-05 18:28:28,042 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 14:28:49] 2025-06-05 18:28:28,042 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 14:28:49] 2025-06-05 18:28:28,042 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 14:28:49] 2025-06-05 18:28:28,042 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 14:28:49] 2025-06-05 18:28:28,042 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 14:28:49] 2025-06-05 18:28:28,042 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 14:28:49] 2025-06-05 18:28:28,042 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 14:28:49] 2025-06-05 18:28:28,042 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 14:28:49] 2025-06-05 18:28:28,042 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 14:28:49] 2025-06-05 18:28:28,042 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 14:28:49] 2025-06-05 18:28:28,042 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 14:28:49] 2025-06-05 18:28:28,043 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 14:28:49] 2025-06-05 18:28:28,043 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 14:28:49] 2025-06-05 18:28:28,043 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 14:28:49] 2025-06-05 18:28:28,043 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 14:28:49] 2025-06-05 18:28:28,043 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 14:28:49] 2025-06-05 18:28:28,043 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 14:28:49] 2025-06-05 18:28:28,043 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 14:28:49] 2025-06-05 18:28:28,043 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 14:28:49] 2025-06-05 18:28:28,043 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 14:28:49] 2025-06-05 18:28:28,043 | INFO     | job 6669442982 has completed (purged errors)
[2025-06-05 14:28:49] 2025-06-05 18:28:28,043 | INFO     | overall cleanup function is called
[2025-06-05 14:28:49] 2025-06-05 18:28:29,050 | INFO     | --- collectZombieJob: --- 10, [2641814]
[2025-06-05 14:28:49] 2025-06-05 18:28:29,050 | INFO     | zombie collector waiting for pid 2641814
[2025-06-05 14:28:49] 2025-06-05 18:28:29,050 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 14:28:49] 2025-06-05 18:28:29,050 | INFO     | collected zombie processes
[2025-06-05 14:28:49] 2025-06-05 18:28:29,050 | INFO     | will attempt to kill all subprocesses of pid=2641814
[2025-06-05 14:28:49] 2025-06-05 18:28:29,451 | INFO     | process IDs to be killed: [2641814] (in reverse order)
[2025-06-05 14:28:49] 2025-06-05 18:28:29,615 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 14:28:49] 2025-06-05 18:28:29,616 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 14:28:49] 2025-06-05 18:28:29,640 | INFO     | did not find any defunct processes belonging to 2641814
[2025-06-05 14:28:49] 2025-06-05 18:28:29,667 | INFO     | did not find any defunct processes belonging to 2641814
[2025-06-05 14:28:49] 2025-06-05 18:28:29,668 | INFO     | ready for new job
[2025-06-05 14:28:49] 2025-06-05 18:28:29,668 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 14:28:49] 2025-06-05 18:28:29,669 | INFO     | **************************************
[2025-06-05 14:28:49] 2025-06-05 18:28:29,669 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 14:28:49] 2025-06-05 18:28:29,669 | INFO     | **************************************
[2025-06-05 14:28:49] 2025-06-05 18:28:29,669 | INFO     | 
[2025-06-05 14:28:49] 2025-06-05 18:28:29,687 | INFO     | architecture information:
[2025-06-05 14:28:49] 2025-06-05 18:28:29,687 | INFO     | executing command: cat /etc/os-release
[2025-06-05 14:28:49] 2025-06-05 18:28:29,702 | INFO     | cat /etc/os-release:
[2025-06-05 14:28:49] NAME="CentOS Linux"
[2025-06-05 14:28:49] VERSION="7 (Core)"
[2025-06-05 14:28:49] ID="centos"
[2025-06-05 14:28:49] ID_LIKE="rhel fedora"
[2025-06-05 14:28:49] VERSION_ID="7"
[2025-06-05 14:28:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 14:28:49] ANSI_COLOR="0;31"
[2025-06-05 14:28:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 14:28:49] HOME_URL="https://www.centos.org/"
[2025-06-05 14:28:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 14:28:49] 
[2025-06-05 14:28:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 14:28:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 14:28:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 14:28:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 14:28:49] 
[2025-06-05 14:28:49] 2025-06-05 18:28:29,702 | INFO     | **************************************
[2025-06-05 14:28:49] 2025-06-05 18:28:30,205 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-05 14:28:49] 2025-06-05 18:28:30,218 | INFO     | sufficient remaining disk space (173287669760 B)
[2025-06-05 14:28:49] 2025-06-05 18:28:30,218 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 14:28:49] 2025-06-05 18:28:30,218 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 14:28:49] 2025-06-05 18:28:30,218 | INFO     | update_server=False
[2025-06-05 14:28:49] 2025-06-05 18:28:30,218 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 14:28:49] 2025-06-05 18:28:30,223 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 14:28:49] 2025-06-05 18:28:30,443 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 14:28:49] 2025-06-05 18:28:30,443 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 14:28:49] 2025-06-05 18:28:30,443 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 14:28:49] 2025-06-05 18:28:30,627 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 14:28:49] 2025-06-05 18:28:30,627 | INFO     | aborting loop
[2025-06-05 14:28:49] 2025-06-05 18:28:30,688 | INFO     | all job control threads have been joined
[2025-06-05 14:28:49] 2025-06-05 18:28:31,125 | INFO     | all data control threads have been joined
[2025-06-05 14:28:49] 2025-06-05 18:28:31,187 | INFO     | all payload control threads have been joined
[2025-06-05 14:28:49] 2025-06-05 18:28:31,224 | INFO     | [job] retrieve thread has finished
[2025-06-05 14:28:49] 2025-06-05 18:28:31,297 | INFO     | [data] copytool_in thread has finished
[2025-06-05 14:28:49] 2025-06-05 18:28:31,503 | INFO     | [payload] failed_post thread has finished
[2025-06-05 14:28:49] 2025-06-05 18:28:31,632 | INFO     | [job] job monitor thread has finished
[2025-06-05 14:28:49] 2025-06-05 18:28:31,642 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 14:28:49] 2025-06-05 18:28:31,693 | INFO     | [job] control thread has finished
[2025-06-05 14:28:49] 2025-06-05 18:28:31,898 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 14:28:49] 2025-06-05 18:28:32,130 | INFO     | [data] control thread has finished
[2025-06-05 14:28:49] 2025-06-05 18:28:32,192 | INFO     | [payload] control thread has finished
[2025-06-05 14:28:49] 2025-06-05 18:28:32,228 | INFO     | [data] copytool_out thread has finished
[2025-06-05 14:28:49] 2025-06-05 18:28:32,284 | INFO     | [job] validate thread has finished
[2025-06-05 14:28:49] 2025-06-05 18:28:32,289 | INFO     | [payload] validate_post thread has finished
[2025-06-05 14:28:49] 2025-06-05 18:28:32,697 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 14:28:49] 2025-06-05 18:28:32,762 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 14:28:49] 2025-06-05 18:28:33,038 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 14:28:49] 2025-06-05 18:28:34,043 | INFO     | [job] queue monitor thread has finished
[2025-06-05 14:28:49] 2025-06-05 18:28:36,767 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 14:28:49] 2025-06-05 18:28:41,188 | INFO     | job.realtimelogging is not enabled
[2025-06-05 14:28:49] 2025-06-05 18:28:42,193 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 14:28:49] 2025-06-05 18:28:43,988 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139837007193920)>', '<ExcThread(monitor, started 139836660893440)>']
[2025-06-05 14:28:49] 2025-06-05 18:28:44,515 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 14:28:49] 2025-06-05 18:28:44,515 | INFO     | [monitor] control thread has ended
[2025-06-05 14:28:49] 2025-06-05 18:28:49,013 | INFO     | all workflow threads have been joined
[2025-06-05 14:28:49] 2025-06-05 18:28:49,013 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 14:28:49] 2025-06-05 18:28:49,013 | INFO     | traces error code: 0
[2025-06-05 14:28:49] 2025-06-05 18:28:49,013 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 14:28:49] 2025-06-05 18:28:49,115 [wrapper] ==== pilot stdout END ====
[2025-06-05 14:28:49] 2025-06-05 18:28:49,118 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 14:28:49] 2025-06-05 18:28:49,120 [wrapper] pilotpid: 2624260
[2025-06-05 14:28:49] 2025-06-05 18:28:49,123 [wrapper] Pilot exit status: 0
[2025-06-05 14:28:49] 2025-06-05 18:28:49,132 [wrapper] pandaids: 6669442982
[2025-06-05 14:28:49] 2025-06-05 18:28:49,229 [wrapper] cleanup supervisor_pilot   45269 2624261
[2025-06-05 14:28:49] 2025-06-05 18:28:49,231 [wrapper] Test setup, not cleaning
[2025-06-05 14:28:49] 2025-06-05 18:28:49,234 [wrapper] apfmon messages muted
[2025-06-05 14:28:49] 2025-06-05 18:28:49,236 [wrapper] ==== wrapper stdout END ====
[2025-06-05 14:28:49] 2025-06-05 18:28:49,238 [wrapper] ==== wrapper stderr END ====
[2025-06-05 14:28:49]  *** Error codes and diagnostics ***
[2025-06-05 14:28:49]     "exeErrorCode": 0,
[2025-06-05 14:28:49]     "exeErrorDiag": "",
[2025-06-05 14:28:49]     "pilotErrorCode": 0,
[2025-06-05 14:28:49]     "pilotErrorDiag": "",
[2025-06-05 14:28:49]  *** Listing of results directory ***
[2025-06-05 14:28:49] total 428652
[2025-06-05 14:28:49] -rw-r--r--. 1 boincer umatlas    495897 May 29 02:19 pilot3.tar.gz
[2025-06-05 14:28:49] -rwx------. 1 boincer umatlas     37140 May 29 02:25 runpilot2-wrapper.sh
[2025-06-05 14:28:49] -rw-r--r--. 1 boincer umatlas      5111 May 29 02:25 queuedata.json
[2025-06-05 14:28:49] -rw-r--r--. 1 boincer umatlas       100 Jun  5 13:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 14:28:49] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  5 13:19 run_atlas
[2025-06-05 14:28:49] -rw-r--r--. 1 boincer umatlas       105 Jun  5 13:19 job.xml
[2025-06-05 14:28:49] -rw-r--r--. 2 boincer umatlas 227193556 Jun  5 13:20 EVNT.44871834._003793.pool.root.1
[2025-06-05 14:28:49] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 13:20 start_atlas.sh
[2025-06-05 14:28:49] drwxrwx--x. 2 boincer umatlas      4096 Jun  5 13:20 shared
[2025-06-05 14:28:49] -rw-r--r--. 2 boincer umatlas    508873 Jun  5 13:20 input.tar.gz
[2025-06-05 14:28:49] -rw-r--r--. 1 boincer umatlas         0 Jun  5 13:20 boinc_lockfile
[2025-06-05 14:28:49] -rw-r--r--. 1 boincer umatlas      2559 Jun  5 13:20 pandaJob.out
[2025-06-05 14:28:49] -rw-------. 1 boincer umatlas    983229 Jun  5 13:20 agis_schedconf.cvmfs.json
[2025-06-05 14:28:49] -rw-------. 1 boincer umatlas   1598969 Jun  5 13:20 agis_ddmendpoints.agis.ALL.json
[2025-06-05 14:28:49] drwx------. 4 boincer umatlas      4096 Jun  5 13:20 pilot3
[2025-06-05 14:28:49] -rw-r--r--. 1 boincer umatlas      7158 Jun  5 14:27 init_data.xml
[2025-06-05 14:28:49] -rw-------. 1 boincer umatlas 206498337 Jun  5 14:27 HITS.44871837._096252.pool.root.1
[2025-06-05 14:28:49] -rw-r--r--. 1 boincer umatlas       530 Jun  5 14:27 boinc_task_state.xml
[2025-06-05 14:28:49] -rw-------. 1 boincer umatlas      1049 Jun  5 14:28 memory_monitor_summary.json
[2025-06-05 14:28:49] -rw-------. 1 boincer umatlas    306297 Jun  5 14:28 log.44871837._096252.job.log.tgz.1
[2025-06-05 14:28:49] -rw-------. 1 boincer umatlas      7688 Jun  5 14:28 heartbeat.json
[2025-06-05 14:28:49] -rw-------. 1 boincer umatlas        95 Jun  5 14:28 pilot_heartbeat.json
[2025-06-05 14:28:49] -rw-r--r--. 1 boincer umatlas      8192 Jun  5 14:28 boinc_mmap_file
[2025-06-05 14:28:49] -rw-r--r--. 1 boincer umatlas        27 Jun  5 14:28 wrapper_checkpoint.txt
[2025-06-05 14:28:49] -rw-------. 1 boincer umatlas      4426 Jun  5 14:28 pilotlog.txt
[2025-06-05 14:28:49] -rw-------. 1 boincer umatlas    405183 Jun  5 14:28 log.44871837._096252.job.log.1
[2025-06-05 14:28:49] -rw-------. 1 boincer umatlas       357 Jun  5 14:28 output.list
[2025-06-05 14:28:49] -rw-r--r--. 1 boincer umatlas       620 Jun  5 14:28 runtime_log
[2025-06-05 14:28:49] -rw-------. 1 boincer umatlas    727040 Jun  5 14:28 result.tar.gz
[2025-06-05 14:28:49] -rw-r--r--. 1 boincer umatlas      8654 Jun  5 14:28 runtime_log.err
[2025-06-05 14:28:49] -rw-------. 1 boincer umatlas       651 Jun  5 14:28 0kAODmqsle7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmfzdKDmvN6Gvm.diag
[2025-06-05 14:28:49] -rw-r--r--. 1 boincer umatlas     21262 Jun  5 14:28 stderr.txt
[2025-06-05 14:28:49] HITS file was successfully produced:
[2025-06-05 14:28:49] -rw-------. 1 boincer umatlas 206498337 Jun  5 14:27 shared/HITS.pool.root.1
[2025-06-05 14:28:49]  *** Contents of shared directory: ***
[2025-06-05 14:28:49] total 424764
[2025-06-05 14:28:49] -rw-r--r--. 2 boincer umatlas 227193556 Jun  5 13:20 ATLAS.root_0
[2025-06-05 14:28:49] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 13:20 start_atlas.sh
[2025-06-05 14:28:49] -rw-r--r--. 2 boincer umatlas    508873 Jun  5 13:20 input.tar.gz
[2025-06-05 14:28:49] -rw-------. 1 boincer umatlas 206498337 Jun  5 14:27 HITS.pool.root.1
[2025-06-05 14:28:49] -rw-------. 1 boincer umatlas    727040 Jun  5 14:28 result.tar.gz
14:28:50 (2618063): run_atlas exited; CPU time 28134.388315
14:28:50 (2618063): called boinc_finish(0)

</stderr_txt>
]]>

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