Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:19:59 (6213): wrapper (7.7.26015): starting
13:19:59 (6213): wrapper: running run_atlas (--nthreads 12)
[2025-06-05 13:19:59] Arguments: --nthreads 12
[2025-06-05 13:19:59] Threads: 12
[2025-06-05 13:19:59] Checking for CVMFS
[2025-06-05 13:19:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 13:20:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 13:20:00] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 13:20:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 13:20:00] 2.11.2.0 2981 37367 88796 146827 3 1 19687200 20275200 1 130560 0 17550577 99.983 7026621 8299 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-05 13:20:00] CVMFS is ok
[2025-06-05 13:20:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 13:20:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 13:20:00] Further information can be found at the LHC@home message board.
[2025-06-05 13:20:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 13:20:00] Checking for apptainer binary...
[2025-06-05 13:20:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 13:20:00] Running /usr/bin/apptainer --version
[2025-06-05 13:20:00] apptainer version 1.3.2-1.el7
[2025-06-05 13:20:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 13:20:01] c-205-30.aglt2.org
[2025-06-05 13:20:01] apptainer works
[2025-06-05 13:20:01] Set ATHENA_PROC_NUMBER=12
[2025-06-05 13:20:01] Set ATHENA_CORE_NUMBER=12
[2025-06-05 13:20:01] Starting ATLAS job with PandaID=6668863044
[2025-06-05 13:20:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 14:53:51]  *** The last 200 lines of the pilot log: ***
[2025-06-05 14:53:51]  is_altstaged=None
[2025-06-05 14:53:51]  is_tar=False
[2025-06-05 14:53:51]  lfn=log.44871837._089738.job.log.tgz.1
[2025-06-05 14:53:51]  mtime=0
[2025-06-05 14:53:51]  protocol_id=None
[2025-06-05 14:53:51]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-05 14:53:51]  replicas=None
[2025-06-05 14:53:51]  scope=mc23_13p6TeV
[2025-06-05 14:53:51]  status=None
[2025-06-05 14:53:51]  status_code=0
[2025-06-05 14:53:51]  storage_token=
[2025-06-05 14:53:51]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6668863044/log.44871837._089738.job.log.tgz.1
[2025-06-05 14:53:51]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/88/d0/log.44871837._089738.job.log.tgz.1
[2025-06-05 14:53:51]  workdir=None
[2025-06-05 14:53:51] ]
[2025-06-05 14:53:51] 2025-06-05 18:53:26,249 | INFO     | transferring file log.44871837._089738.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6668863044/log.44871837._089738.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-05 14:53:51] 2025-06-05 18:53:26,249 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6668863044/log.44871837._089738.job.log.tgz.1 /tmp/boinchome/slots/0/log.44871837._089738.job
[2025-06-05 14:53:51] 2025-06-05 18:53:26,270 | INFO     | adding to output.list: log.44871837._089738.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/88/d0/log.44871837._089738.job.log.tg
[2025-06-05 14:53:51] 2025-06-05 18:53:26,271 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-05 14:53:51] 2025-06-05 18:53:26,271 | INFO     | summary of transferred files:
[2025-06-05 14:53:51] 2025-06-05 18:53:26,272 | INFO     |  -- lfn=log.44871837._089738.job.log.tgz.1, status_code=0, status=transferred
[2025-06-05 14:53:51] 2025-06-05 18:53:26,272 | INFO     | stage-out finished correctly
[2025-06-05 14:53:51] 2025-06-05 18:53:27,038 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-05 14:53:51] 2025-06-05 18:53:27,120 | INFO     | job 6668863044 has state=finished
[2025-06-05 14:53:51] 2025-06-05 18:53:27,121 | INFO     | preparing for final server update for job 6668863044 in state='finished'
[2025-06-05 14:53:51] 2025-06-05 18:53:27,121 | INFO     | this job has now completed (state=finished)
[2025-06-05 14:53:51] 2025-06-05 18:53:27,121 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-05 14:53:51] 2025-06-05 18:53:27,122 | INFO     | log transfer has been attempted: DONE
[2025-06-05 14:53:51] 2025-06-05 18:53:27,122 | INFO     | job 6668863044 has finished - writing final server update
[2025-06-05 14:53:51] 2025-06-05 18:53:27,122 | INFO     | total number of processed events: 400 (read)
[2025-06-05 14:53:51] 2025-06-05 18:53:27,124 | INFO     | executing command: lscpu
[2025-06-05 14:53:51] 2025-06-05 18:53:27,149 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 14:53:51] 2025-06-05 18:53:31,319 | WARNING  | process 17625 can no longer be monitored (due to stat problems) - aborting
[2025-06-05 14:53:51] 2025-06-05 18:53:31,319 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6668863044/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 14:53:51] 2025-06-05 18:53:31,409 | INFO     | number of running child processes to parent process 17625: 1
[2025-06-05 14:53:51] 2025-06-05 18:53:31,409 | INFO     | maximum number of monitored processes: 6
[2025-06-05 14:53:51] 2025-06-05 18:53:31,534 | INFO     | PID=11214 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-05 14:53:51] 2025-06-05 18:53:31,596 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-05 14:53:51] 2025-06-05 18:53:31,596 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6668863044/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 14:53:51] 2025-06-05 18:53:31,597 | INFO     | extracted standard info from prmon json
[2025-06-05 14:53:51] 2025-06-05 18:53:31,597 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 14:53:51] 2025-06-05 18:53:31,597 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 14:53:51] 2025-06-05 18:53:31,598 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 14:53:51] 2025-06-05 18:53:31,598 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 14:53:51] 2025-06-05 18:53:31,600 | INFO     | fitting pss+swap vs Time
[2025-06-05 14:53:51] 2025-06-05 18:53:31,601 | INFO     | sum of square deviations: 190403570.0
[2025-06-05 14:53:51] 2025-06-05 18:53:31,601 | INFO     | sum of deviations: -13674469186.000002
[2025-06-05 14:53:51] 2025-06-05 18:53:31,601 | INFO     | mean x: 1749146915.0
[2025-06-05 14:53:51] 2025-06-05 18:53:31,601 | INFO     | mean y: 2808060.411764706
[2025-06-05 14:53:51] 2025-06-05 18:53:31,601 | INFO     | -- intersect: 125623643798.70418
[2025-06-05 14:53:51] 2025-06-05 18:53:31,601 | INFO     | intersect: 125623643798.70418
[2025-06-05 14:53:51] 2025-06-05 18:53:31,602 | INFO     | chi2: 0.06578020349170696
[2025-06-05 14:53:51] 2025-06-05 18:53:31,602 | INFO     | -- intersect: 125623643798.70418
[2025-06-05 14:53:51] 2025-06-05 18:53:31,602 | INFO     | current memory leak: -71.82 B/s (using 85 data points, chi2=0.07)
[2025-06-05 14:53:51] 2025-06-05 18:53:31,602 | INFO     | ..............................
[2025-06-05 14:53:51] 2025-06-05 18:53:31,602 | INFO     | . Timing measurements:
[2025-06-05 14:53:51] 2025-06-05 18:53:31,602 | INFO     | . get job = 0 s
[2025-06-05 14:53:51] 2025-06-05 18:53:31,603 | INFO     | . initial setup = 2 s
[2025-06-05 14:53:51] 2025-06-05 18:53:31,603 | INFO     | . payload setup = 9 s
[2025-06-05 14:53:51] 2025-06-05 18:53:31,603 | INFO     | . stage-in = 0 s
[2025-06-05 14:53:51] 2025-06-05 18:53:31,603 | INFO     | . payload execution = 5559 s
[2025-06-05 14:53:51] 2025-06-05 18:53:31,603 | INFO     | . stage-out = 0 s
[2025-06-05 14:53:51] 2025-06-05 18:53:31,603 | INFO     | . log creation = 0 s
[2025-06-05 14:53:51] 2025-06-05 18:53:31,603 | INFO     | ..............................
[2025-06-05 14:53:51] 2025-06-05 18:53:31,770 | INFO     | 
[2025-06-05 14:53:51] 2025-06-05 18:53:31,771 | INFO     | job summary report
[2025-06-05 14:53:51] 2025-06-05 18:53:31,771 | INFO     | --------------------------------------------------
[2025-06-05 14:53:51] 2025-06-05 18:53:31,771 | INFO     | PanDA job id: 6668863044
[2025-06-05 14:53:51] 2025-06-05 18:53:31,771 | INFO     | task id: 44871837
[2025-06-05 14:53:51] 2025-06-05 18:53:31,771 | INFO     | errors: (none)
[2025-06-05 14:53:51] 2025-06-05 18:53:31,772 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 14:53:51] 2025-06-05 18:53:31,772 | INFO     | pilot state: finished 
[2025-06-05 14:53:51] 2025-06-05 18:53:31,772 | INFO     | transexitcode: 0
[2025-06-05 14:53:51] 2025-06-05 18:53:31,772 | INFO     | exeerrorcode: 0
[2025-06-05 14:53:51] 2025-06-05 18:53:31,772 | INFO     | exeerrordiag: 
[2025-06-05 14:53:51] 2025-06-05 18:53:31,772 | INFO     | exitcode: 0
[2025-06-05 14:53:51] 2025-06-05 18:53:31,773 | INFO     | exitmsg: OK
[2025-06-05 14:53:51] 2025-06-05 18:53:31,773 | INFO     | cpuconsumptiontime: 60950 s
[2025-06-05 14:53:51] 2025-06-05 18:53:31,773 | INFO     | nevents: 400
[2025-06-05 14:53:51] 2025-06-05 18:53:31,773 | INFO     | neventsw: 0
[2025-06-05 14:53:51] 2025-06-05 18:53:31,773 | INFO     | pid: 17625
[2025-06-05 14:53:51] 2025-06-05 18:53:31,773 | INFO     | pgrp: 17625
[2025-06-05 14:53:51] 2025-06-05 18:53:31,773 | INFO     | corecount: 12
[2025-06-05 14:53:51] 2025-06-05 18:53:31,774 | INFO     | event service: False
[2025-06-05 14:53:51] 2025-06-05 18:53:31,774 | INFO     | sizes: {0: 2397221, 1: 2397420, 5: 2397626, 11: 2397682, 5573: 2433067, 5574: 2433067, 5579: 2433365}
[2025-06-05 14:53:51] 2025-06-05 18:53:31,774 | INFO     | --------------------------------------------------
[2025-06-05 14:53:51] 2025-06-05 18:53:31,774 | INFO     | 
[2025-06-05 14:53:51] 2025-06-05 18:53:31,774 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 14:53:51] 2025-06-05 18:53:31,796 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 14:53:51] 2025-06-05 18:53:31,797 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 14:53:51] 2025-06-05 18:53:31,797 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 14:53:51] 2025-06-05 18:53:31,797 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 14:53:51] 2025-06-05 18:53:31,797 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 14:53:51] 2025-06-05 18:53:31,797 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 14:53:51] 2025-06-05 18:53:31,798 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 14:53:51] 2025-06-05 18:53:31,798 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 14:53:51] 2025-06-05 18:53:31,798 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 14:53:51] 2025-06-05 18:53:31,798 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 14:53:51] 2025-06-05 18:53:31,798 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 14:53:51] 2025-06-05 18:53:31,798 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 14:53:51] 2025-06-05 18:53:31,799 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 14:53:51] 2025-06-05 18:53:31,799 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 14:53:51] 2025-06-05 18:53:31,799 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 14:53:51] 2025-06-05 18:53:31,799 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 14:53:51] 2025-06-05 18:53:31,799 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 14:53:51] 2025-06-05 18:53:31,800 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 14:53:51] 2025-06-05 18:53:31,800 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 14:53:51] 2025-06-05 18:53:31,800 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 14:53:51] 2025-06-05 18:53:31,800 | INFO     | job 6668863044 has completed (purged errors)
[2025-06-05 14:53:51] 2025-06-05 18:53:31,800 | INFO     | overall cleanup function is called
[2025-06-05 14:53:51] 2025-06-05 18:53:32,534 | INFO     | 5598s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-06-05 14:53:51] 2025-06-05 18:53:32,808 | INFO     | --- collectZombieJob: --- 10, [17625]
[2025-06-05 14:53:51] 2025-06-05 18:53:32,808 | INFO     | zombie collector waiting for pid 17625
[2025-06-05 14:53:51] 2025-06-05 18:53:32,808 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 14:53:51] 2025-06-05 18:53:32,808 | INFO     | collected zombie processes
[2025-06-05 14:53:51] 2025-06-05 18:53:32,808 | INFO     | will attempt to kill all subprocesses of pid=17625
[2025-06-05 14:53:51] 2025-06-05 18:53:32,900 | INFO     | process IDs to be killed: [17625] (in reverse order)
[2025-06-05 14:53:51] 2025-06-05 18:53:32,950 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 14:53:51] 2025-06-05 18:53:32,950 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 14:53:51] 2025-06-05 18:53:32,954 | INFO     | did not find any defunct processes belonging to 17625
[2025-06-05 14:53:51] 2025-06-05 18:53:32,957 | INFO     | did not find any defunct processes belonging to 17625
[2025-06-05 14:53:51] 2025-06-05 18:53:32,958 | INFO     | ready for new job
[2025-06-05 14:53:51] 2025-06-05 18:53:32,958 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 14:53:51] 2025-06-05 18:53:32,959 | INFO     | **************************************
[2025-06-05 14:53:51] 2025-06-05 18:53:32,960 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 14:53:51] 2025-06-05 18:53:32,960 | INFO     | **************************************
[2025-06-05 14:53:51] 2025-06-05 18:53:32,960 | INFO     | 
[2025-06-05 14:53:51] 2025-06-05 18:53:32,960 | INFO     | architecture information:
[2025-06-05 14:53:51] 2025-06-05 18:53:32,961 | INFO     | executing command: cat /etc/os-release
[2025-06-05 14:53:51] 2025-06-05 18:53:32,973 | INFO     | cat /etc/os-release:
[2025-06-05 14:53:51] NAME="CentOS Linux"
[2025-06-05 14:53:51] VERSION="7 (Core)"
[2025-06-05 14:53:51] ID="centos"
[2025-06-05 14:53:51] ID_LIKE="rhel fedora"
[2025-06-05 14:53:51] VERSION_ID="7"
[2025-06-05 14:53:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 14:53:51] ANSI_COLOR="0;31"
[2025-06-05 14:53:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 14:53:51] HOME_URL="https://www.centos.org/"
[2025-06-05 14:53:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 14:53:51] 
[2025-06-05 14:53:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 14:53:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 14:53:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 14:53:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 14:53:51] 
[2025-06-05 14:53:51] 2025-06-05 18:53:32,974 | INFO     | **************************************
[2025-06-05 14:53:51] 2025-06-05 18:53:33,477 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 14:53:51] 2025-06-05 18:53:33,493 | INFO     | sufficient remaining disk space (29376905216 B)
[2025-06-05 14:53:51] 2025-06-05 18:53:33,493 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 14:53:51] 2025-06-05 18:53:33,493 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 14:53:51] 2025-06-05 18:53:33,493 | INFO     | update_server=False
[2025-06-05 14:53:51] 2025-06-05 18:53:33,493 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 14:53:51] 2025-06-05 18:53:33,494 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 14:53:51] 2025-06-05 18:53:33,494 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 14:53:51] 2025-06-05 18:53:33,540 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 14:53:51] 2025-06-05 18:53:33,540 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 14:53:51] 2025-06-05 18:53:33,540 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 14:53:51] 2025-06-05 18:53:33,649 | INFO     | all payload control threads have been joined
[2025-06-05 14:53:51] 2025-06-05 18:53:33,912 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-05 14:53:51] 2025-06-05 18:53:33,912 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-05 14:53:51] 2025-06-05 18:53:33,912 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 14:53:51] 2025-06-05 18:53:33,912 | INFO     | will abort loop
[2025-06-05 14:53:51] 2025-06-05 18:53:34,136 | INFO     | all job control threads have been joined
[2025-06-05 14:53:51] 2025-06-05 18:53:34,368 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 14:53:51] 2025-06-05 18:53:34,499 | INFO     | [job] retrieve thread has finished
[2025-06-05 14:53:51] 2025-06-05 18:53:34,500 | INFO     | [job] queue monitor thread has finished
[2025-06-05 14:53:51] 2025-06-05 18:53:34,527 | INFO     | [payload] validate_post thread has finished
[2025-06-05 14:53:51] 2025-06-05 18:53:34,561 | INFO     | all data control threads have been joined
[2025-06-05 14:53:51] 2025-06-05 18:53:34,655 | INFO     | [payload] control thread has finished
[2025-06-05 14:53:51] 2025-06-05 18:53:34,755 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 14:53:51] 2025-06-05 18:53:34,918 | INFO     | [job] job monitor thread has finished
[2025-06-05 14:53:51] 2025-06-05 18:53:35,141 | INFO     | [job] control thread has finished
[2025-06-05 14:53:51] 2025-06-05 18:53:35,201 | INFO     | [data] copytool_in thread has finished
[2025-06-05 14:53:51] 2025-06-05 18:53:35,378 | INFO     | [payload] failed_post thread has finished
[2025-06-05 14:53:51] 2025-06-05 18:53:35,437 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 14:53:51] 2025-06-05 18:53:35,567 | INFO     | [data] control thread has finished
[2025-06-05 14:53:51] 2025-06-05 18:53:35,782 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 14:53:51] 2025-06-05 18:53:35,809 | INFO     | [job] validate thread has finished
[2025-06-05 14:53:51] 2025-06-05 18:53:36,374 | INFO     | [data] copytool_out thread has finished
[2025-06-05 14:53:51] 2025-06-05 18:53:37,500 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 14:53:51] 2025-06-05 18:53:43,731 | INFO     | job.realtimelogging is not enabled
[2025-06-05 14:53:51] 2025-06-05 18:53:44,736 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 14:53:51] 2025-06-05 18:53:46,287 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140336380659520)>', '<ExcThread(monitor, started 140335959234304)>']
[2025-06-05 14:53:51] 2025-06-05 18:53:46,606 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 14:53:51] 2025-06-05 18:53:46,606 | INFO     | [monitor] control thread has ended
[2025-06-05 14:53:51] 2025-06-05 18:53:51,312 | INFO     | all workflow threads have been joined
[2025-06-05 14:53:51] 2025-06-05 18:53:51,312 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 14:53:51] 2025-06-05 18:53:51,312 | INFO     | traces error code: 0
[2025-06-05 14:53:51] 2025-06-05 18:53:51,312 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 14:53:51] 2025-06-05 18:53:51,415 [wrapper] ==== pilot stdout END ====
[2025-06-05 14:53:51] 2025-06-05 18:53:51,419 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 14:53:51] 2025-06-05 18:53:51,423 [wrapper] pilotpid: 11214
[2025-06-05 14:53:51] 2025-06-05 18:53:51,426 [wrapper] Pilot exit status: 0
[2025-06-05 14:53:51] 2025-06-05 18:53:51,442 [wrapper] pandaids: 6668863044
[2025-06-05 14:53:51] 2025-06-05 18:53:51,477 [wrapper] cleanup supervisor_pilot  2307 11215
[2025-06-05 14:53:51] 2025-06-05 18:53:51,481 [wrapper] Test setup, not cleaning
[2025-06-05 14:53:51] 2025-06-05 18:53:51,485 [wrapper] apfmon messages muted
[2025-06-05 14:53:51] 2025-06-05 18:53:51,488 [wrapper] ==== wrapper stdout END ====
[2025-06-05 14:53:51] 2025-06-05 18:53:51,492 [wrapper] ==== wrapper stderr END ====
[2025-06-05 14:53:51]  *** Error codes and diagnostics ***
[2025-06-05 14:53:51]     "exeErrorCode": 0,
[2025-06-05 14:53:51]     "exeErrorDiag": "",
[2025-06-05 14:53:51]     "pilotErrorCode": 0,
[2025-06-05 14:53:51]     "pilotErrorDiag": "",
[2025-06-05 14:53:51]  *** Listing of results directory ***
[2025-06-05 14:53:51] total 417276
[2025-06-05 14:53:51] -rw-r--r-- 1 boincer umatlas    495897 May 28 15:50 pilot3.tar.gz
[2025-06-05 14:53:51] -rw-r--r-- 1 boincer umatlas      5111 May 28 16:00 queuedata.json
[2025-06-05 14:53:51] -rwx------ 1 boincer umatlas     37140 May 28 16:00 runpilot2-wrapper.sh
[2025-06-05 14:53:51] -rw-r--r-- 1 boincer umatlas       100 Jun  5 13:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 14:53:51] -rwxr-xr-x 1 boincer umatlas      7986 Jun  5 13:19 run_atlas
[2025-06-05 14:53:51] -rw-r--r-- 1 boincer umatlas       105 Jun  5 13:19 job.xml
[2025-06-05 14:53:51] -rw-r--r-- 2 boincer umatlas 226014230 Jun  5 13:19 EVNT.44871834._003491.pool.root.1
[2025-06-05 14:53:51] -rw-r--r-- 2 boincer umatlas     15093 Jun  5 13:19 start_atlas.sh
[2025-06-05 14:53:51] drwxrwx--x 2 boincer umatlas      4096 Jun  5 13:19 shared
[2025-06-05 14:53:51] -rw-r--r-- 2 boincer umatlas    508880 Jun  5 13:19 input.tar.gz
[2025-06-05 14:53:51] -rw-r--r-- 1 boincer umatlas         0 Jun  5 13:19 boinc_lockfile
[2025-06-05 14:53:51] -rw-r--r-- 1 boincer umatlas      2559 Jun  5 13:20 pandaJob.out
[2025-06-05 14:53:51] -rw------- 1 boincer umatlas    983229 Jun  5 13:20 agis_schedconf.cvmfs.json
[2025-06-05 14:53:51] -rw------- 1 boincer umatlas   1598969 Jun  5 13:20 agis_ddmendpoints.agis.ALL.json
[2025-06-05 14:53:51] drwx------ 4 boincer umatlas      4096 Jun  5 13:20 pilot3
[2025-06-05 14:53:51] -rw-r--r-- 1 boincer umatlas      5868 Jun  5 14:48 init_data.xml
[2025-06-05 14:53:51] -rw------- 1 boincer umatlas 195614100 Jun  5 14:52 HITS.44871837._089738.pool.root.1
[2025-06-05 14:53:51] -rw-r--r-- 1 boincer umatlas       530 Jun  5 14:53 boinc_task_state.xml
[2025-06-05 14:53:51] -rw------- 1 boincer umatlas      1044 Jun  5 14:53 memory_monitor_summary.json
[2025-06-05 14:53:51] -rw------- 1 boincer umatlas    389668 Jun  5 14:53 log.44871837._089738.job.log.tgz.1
[2025-06-05 14:53:51] -rw------- 1 boincer umatlas        95 Jun  5 14:53 pilot_heartbeat.json
[2025-06-05 14:53:51] -rw------- 1 boincer umatlas      7750 Jun  5 14:53 heartbeat.json
[2025-06-05 14:53:51] -rw-r--r-- 1 boincer umatlas        27 Jun  5 14:53 wrapper_checkpoint.txt
[2025-06-05 14:53:51] -rw-r--r-- 1 boincer umatlas      8192 Jun  5 14:53 boinc_mmap_file
[2025-06-05 14:53:51] -rw------- 1 boincer umatlas      4611 Jun  5 14:53 pilotlog.txt
[2025-06-05 14:53:51] -rw------- 1 boincer umatlas    525287 Jun  5 14:53 log.44871837._089738.job.log.1
[2025-06-05 14:53:51] -rw------- 1 boincer umatlas       357 Jun  5 14:53 output.list
[2025-06-05 14:53:51] -rw-r--r-- 1 boincer umatlas       620 Jun  5 14:53 runtime_log
[2025-06-05 14:53:51] -rw------- 1 boincer umatlas    931840 Jun  5 14:53 result.tar.gz
[2025-06-05 14:53:51] -rw-r--r-- 1 boincer umatlas      8661 Jun  5 14:53 runtime_log.err
[2025-06-05 14:53:51] -rw------- 1 boincer umatlas       659 Jun  5 14:53 9nhKDmg7be7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmuzcKDmHLYxvn.diag
[2025-06-05 14:53:51] -rw-r--r-- 1 boincer umatlas     21444 Jun  5 14:53 stderr.txt
[2025-06-05 14:53:51] HITS file was successfully produced:
[2025-06-05 14:53:51] -rw------- 1 boincer umatlas 195614100 Jun  5 14:52 shared/HITS.pool.root.1
[2025-06-05 14:53:51]  *** Contents of shared directory: ***
[2025-06-05 14:53:51] total 413184
[2025-06-05 14:53:51] -rw-r--r-- 2 boincer umatlas 226014230 Jun  5 13:19 ATLAS.root_0
[2025-06-05 14:53:51] -rw-r--r-- 2 boincer umatlas     15093 Jun  5 13:19 start_atlas.sh
[2025-06-05 14:53:51] -rw-r--r-- 2 boincer umatlas    508880 Jun  5 13:19 input.tar.gz
[2025-06-05 14:53:51] -rw------- 1 boincer umatlas 195614100 Jun  5 14:52 HITS.pool.root.1
[2025-06-05 14:53:51] -rw------- 1 boincer umatlas    931840 Jun  5 14:53 result.tar.gz
14:53:52 (6213): run_atlas exited; CPU time 60933.103685
14:53:52 (6213): called boinc_finish(0)

</stderr_txt>
]]>

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