Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:18:54 (18096): wrapper (7.7.26015): starting
13:18:54 (18096): wrapper: running run_atlas (--nthreads 12)
[2025-06-05 13:18:55] Arguments: --nthreads 12
[2025-06-05 13:18:55] Threads: 12
[2025-06-05 13:18:55] Checking for CVMFS
[2025-06-05 13:18:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 13:18:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 13:18:55] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 13:18:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 13:18:55] 2.11.2.0 3081 37365 91592 146827 2 1 19629599 20275200 1 130560 0 16551171 99.983 6698845 7929 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-05 13:18:55] CVMFS is ok
[2025-06-05 13:18:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 13:18:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 13:18:55] Further information can be found at the LHC@home message board.
[2025-06-05 13:18:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 13:18:55] Checking for apptainer binary...
[2025-06-05 13:18:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 13:18:55] Running /usr/bin/apptainer --version
[2025-06-05 13:18:55] apptainer version 1.3.2-1.el7
[2025-06-05 13:18:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 13:18:56] c-205-29.aglt2.org
[2025-06-05 13:18:56] apptainer works
[2025-06-05 13:18:56] Set ATHENA_PROC_NUMBER=12
[2025-06-05 13:18:56] Set ATHENA_CORE_NUMBER=12
[2025-06-05 13:18:56] Starting ATLAS job with PandaID=6669238426
[2025-06-05 13:18:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 14:50:51]  *** The last 200 lines of the pilot log: ***
[2025-06-05 14:50:51]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-05 14:50:51]  replicas=None
[2025-06-05 14:50:51]  scope=mc23_13p6TeV
[2025-06-05 14:50:51]  status=None
[2025-06-05 14:50:51]  status_code=0
[2025-06-05 14:50:51]  storage_token=
[2025-06-05 14:50:51]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6669238426/log.44871837._095192.job.log.tgz.1
[2025-06-05 14:50:51]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ef/d5/log.44871837._095192.job.log.tgz.1
[2025-06-05 14:50:51]  workdir=None
[2025-06-05 14:50:51] ]
[2025-06-05 14:50:51] 2025-06-05 18:50:27,985 | INFO     | transferring file log.44871837._095192.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6669238426/log.44871837._095192.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-05 14:50:51] 2025-06-05 18:50:27,986 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6669238426/log.44871837._095192.job.log.tgz.1 /tmp/boinchome/slots/0/log.44871837._095192.job
[2025-06-05 14:50:51] 2025-06-05 18:50:28,008 | INFO     | adding to output.list: log.44871837._095192.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ef/d5/log.44871837._095192.job.log.tg
[2025-06-05 14:50:51] 2025-06-05 18:50:28,009 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-05 14:50:51] 2025-06-05 18:50:28,009 | INFO     | summary of transferred files:
[2025-06-05 14:50:51] 2025-06-05 18:50:28,009 | INFO     |  -- lfn=log.44871837._095192.job.log.tgz.1, status_code=0, status=transferred
[2025-06-05 14:50:51] 2025-06-05 18:50:28,009 | INFO     | stage-out finished correctly
[2025-06-05 14:50:51] 2025-06-05 18:50:28,093 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-05 14:50:51] 2025-06-05 18:50:28,175 | INFO     | job 6669238426 has state=finished
[2025-06-05 14:50:51] 2025-06-05 18:50:28,175 | INFO     | preparing for final server update for job 6669238426 in state='finished'
[2025-06-05 14:50:51] 2025-06-05 18:50:28,176 | INFO     | this job has now completed (state=finished)
[2025-06-05 14:50:51] 2025-06-05 18:50:28,176 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-05 14:50:51] 2025-06-05 18:50:28,176 | INFO     | log transfer has been attempted: DONE
[2025-06-05 14:50:51] 2025-06-05 18:50:28,177 | INFO     | job 6669238426 has finished - writing final server update
[2025-06-05 14:50:51] 2025-06-05 18:50:28,177 | INFO     | total number of processed events: 400 (read)
[2025-06-05 14:50:51] 2025-06-05 18:50:28,179 | INFO     | executing command: lscpu
[2025-06-05 14:50:51] 2025-06-05 18:50:28,207 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 14:50:51] 2025-06-05 18:50:32,788 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-05 14:50:51] 2025-06-05 18:50:32,789 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6669238426/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 14:50:51] 2025-06-05 18:50:32,790 | INFO     | extracted standard info from prmon json
[2025-06-05 14:50:51] 2025-06-05 18:50:32,790 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 14:50:51] 2025-06-05 18:50:32,790 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 14:50:51] 2025-06-05 18:50:32,791 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 14:50:51] 2025-06-05 18:50:32,791 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 14:50:51] 2025-06-05 18:50:32,794 | INFO     | fitting pss+swap vs Time
[2025-06-05 14:50:51] 2025-06-05 18:50:32,794 | INFO     | sum of square deviations: 177275882.0
[2025-06-05 14:50:51] 2025-06-05 18:50:32,795 | INFO     | sum of deviations: -12809715252.0
[2025-06-05 14:50:51] 2025-06-05 18:50:32,795 | INFO     | mean x: 1749146787.0
[2025-06-05 14:50:51] 2025-06-05 18:50:32,795 | INFO     | mean y: 2811553.265060241
[2025-06-05 14:50:51] 2025-06-05 18:50:32,795 | INFO     | -- intersect: 126393790532.6882
[2025-06-05 14:50:51] 2025-06-05 18:50:32,795 | INFO     | intersect: 126393790532.6882
[2025-06-05 14:50:51] 2025-06-05 18:50:32,795 | INFO     | chi2: 0.10344804086314545
[2025-06-05 14:50:51] 2025-06-05 18:50:32,795 | INFO     | -- intersect: 126393790532.6882
[2025-06-05 14:50:51] 2025-06-05 18:50:32,796 | INFO     | current memory leak: -72.26 B/s (using 83 data points, chi2=0.10)
[2025-06-05 14:50:51] 2025-06-05 18:50:32,796 | INFO     | ..............................
[2025-06-05 14:50:51] 2025-06-05 18:50:32,796 | INFO     | . Timing measurements:
[2025-06-05 14:50:51] 2025-06-05 18:50:32,796 | INFO     | . get job = 0 s
[2025-06-05 14:50:51] 2025-06-05 18:50:32,796 | INFO     | . initial setup = 2 s
[2025-06-05 14:50:51] 2025-06-05 18:50:32,796 | INFO     | . payload setup = 9 s
[2025-06-05 14:50:51] 2025-06-05 18:50:32,796 | INFO     | . stage-in = 0 s
[2025-06-05 14:50:51] 2025-06-05 18:50:32,796 | INFO     | . payload execution = 5447 s
[2025-06-05 14:50:51] 2025-06-05 18:50:32,797 | INFO     | . stage-out = 0 s
[2025-06-05 14:50:51] 2025-06-05 18:50:32,797 | INFO     | . log creation = 0 s
[2025-06-05 14:50:51] 2025-06-05 18:50:32,797 | INFO     | ..............................
[2025-06-05 14:50:51] 2025-06-05 18:50:32,879 | INFO     | 
[2025-06-05 14:50:51] 2025-06-05 18:50:32,879 | INFO     | job summary report
[2025-06-05 14:50:51] 2025-06-05 18:50:32,879 | INFO     | --------------------------------------------------
[2025-06-05 14:50:51] 2025-06-05 18:50:32,879 | INFO     | PanDA job id: 6669238426
[2025-06-05 14:50:51] 2025-06-05 18:50:32,879 | INFO     | task id: 44871837
[2025-06-05 14:50:51] 2025-06-05 18:50:32,879 | INFO     | errors: (none)
[2025-06-05 14:50:51] 2025-06-05 18:50:32,879 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 14:50:51] 2025-06-05 18:50:32,880 | INFO     | pilot state: finished 
[2025-06-05 14:50:51] 2025-06-05 18:50:32,880 | INFO     | transexitcode: 0
[2025-06-05 14:50:51] 2025-06-05 18:50:32,880 | INFO     | exeerrorcode: 0
[2025-06-05 14:50:51] 2025-06-05 18:50:32,880 | INFO     | exeerrordiag: 
[2025-06-05 14:50:51] 2025-06-05 18:50:32,880 | INFO     | exitcode: 0
[2025-06-05 14:50:51] 2025-06-05 18:50:32,880 | INFO     | exitmsg: OK
[2025-06-05 14:50:51] 2025-06-05 18:50:32,880 | INFO     | cpuconsumptiontime: 60112 s
[2025-06-05 14:50:51] 2025-06-05 18:50:32,880 | INFO     | nevents: 400
[2025-06-05 14:50:51] 2025-06-05 18:50:32,880 | INFO     | neventsw: 0
[2025-06-05 14:50:51] 2025-06-05 18:50:32,880 | INFO     | pid: 28143
[2025-06-05 14:50:51] 2025-06-05 18:50:32,881 | INFO     | pgrp: 28143
[2025-06-05 14:50:51] 2025-06-05 18:50:32,881 | INFO     | corecount: 12
[2025-06-05 14:50:51] 2025-06-05 18:50:32,881 | INFO     | event service: False
[2025-06-05 14:50:51] 2025-06-05 18:50:32,881 | INFO     | sizes: {0: 2397392, 1: 2397392, 5: 2397626, 11: 2397682, 5461: 2433047, 5462: 2433047, 5466: 2433345}
[2025-06-05 14:50:51] 2025-06-05 18:50:32,881 | INFO     | --------------------------------------------------
[2025-06-05 14:50:51] 2025-06-05 18:50:32,881 | INFO     | 
[2025-06-05 14:50:51] 2025-06-05 18:50:32,881 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 14:50:51] 2025-06-05 18:50:32,904 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 14:50:51] 2025-06-05 18:50:32,904 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 14:50:51] 2025-06-05 18:50:32,904 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 14:50:51] 2025-06-05 18:50:32,904 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 14:50:51] 2025-06-05 18:50:32,905 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 14:50:51] 2025-06-05 18:50:32,905 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 14:50:51] 2025-06-05 18:50:32,905 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 14:50:51] 2025-06-05 18:50:32,905 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 14:50:51] 2025-06-05 18:50:32,905 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 14:50:51] 2025-06-05 18:50:32,905 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 14:50:51] 2025-06-05 18:50:32,906 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 14:50:51] 2025-06-05 18:50:32,906 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 14:50:51] 2025-06-05 18:50:32,906 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 14:50:51] 2025-06-05 18:50:32,906 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 14:50:51] 2025-06-05 18:50:32,906 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 14:50:51] 2025-06-05 18:50:32,906 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 14:50:51] 2025-06-05 18:50:32,907 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 14:50:51] 2025-06-05 18:50:32,907 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 14:50:51] 2025-06-05 18:50:32,907 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 14:50:51] 2025-06-05 18:50:32,907 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 14:50:51] 2025-06-05 18:50:32,907 | INFO     | job 6669238426 has completed (purged errors)
[2025-06-05 14:50:51] 2025-06-05 18:50:32,908 | INFO     | overall cleanup function is called
[2025-06-05 14:50:51] 2025-06-05 18:50:33,809 | WARNING  | process 28143 can no longer be monitored (due to stat problems) - aborting
[2025-06-05 14:50:51] 2025-06-05 18:50:33,881 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 14:50:51] 2025-06-05 18:50:33,883 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 14:50:51] 2025-06-05 18:50:33,883 | INFO     | skipping file size check of payload stdout file (/tmp/boinchome/slots/0/PanDA_Pilot-6669238426/payload.stdout) since it has not been created yet
[2025-06-05 14:50:51] 2025-06-05 18:50:33,884 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 14:50:51] 2025-06-05 18:50:33,899 | INFO     | sufficient remaining disk space (29384245248 B)
[2025-06-05 14:50:51] 2025-06-05 18:50:33,900 | WARNING  | skipping size check of workdir since it has not been created yet
[2025-06-05 14:50:51] 2025-06-05 18:50:33,900 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6669238426/HITS.44871837._095192.pool.root.1 since it does not exist
[2025-06-05 14:50:51] 2025-06-05 18:50:33,916 | INFO     | --- collectZombieJob: --- 10, [28143]
[2025-06-05 14:50:51] 2025-06-05 18:50:33,916 | INFO     | zombie collector waiting for pid 28143
[2025-06-05 14:50:51] 2025-06-05 18:50:33,916 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 14:50:51] 2025-06-05 18:50:33,917 | INFO     | collected zombie processes
[2025-06-05 14:50:51] 2025-06-05 18:50:33,917 | INFO     | will attempt to kill all subprocesses of pid=28143
[2025-06-05 14:50:51] 2025-06-05 18:50:34,077 | INFO     | number of running child processes to parent process 28143: 1
[2025-06-05 14:50:51] 2025-06-05 18:50:34,077 | INFO     | maximum number of monitored processes: 6
[2025-06-05 14:50:51] 2025-06-05 18:50:34,078 | INFO     | aborting job monitoring since job object (job id=6669238426) has expired
[2025-06-05 14:50:51] 2025-06-05 18:50:34,089 | INFO     | process IDs to be killed: [28143] (in reverse order)
[2025-06-05 14:50:51] 2025-06-05 18:50:34,139 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 14:50:51] 2025-06-05 18:50:34,139 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 14:50:51] 2025-06-05 18:50:34,143 | INFO     | did not find any defunct processes belonging to 28143
[2025-06-05 14:50:51] 2025-06-05 18:50:34,145 | INFO     | did not find any defunct processes belonging to 28143
[2025-06-05 14:50:51] 2025-06-05 18:50:34,146 | INFO     | ready for new job
[2025-06-05 14:50:51] 2025-06-05 18:50:34,146 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 14:50:51] 2025-06-05 18:50:34,147 | INFO     | **************************************
[2025-06-05 14:50:51] 2025-06-05 18:50:34,147 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 14:50:51] 2025-06-05 18:50:34,147 | INFO     | **************************************
[2025-06-05 14:50:51] 2025-06-05 18:50:34,147 | INFO     | 
[2025-06-05 14:50:51] 2025-06-05 18:50:34,147 | INFO     | architecture information:
[2025-06-05 14:50:51] 2025-06-05 18:50:34,148 | INFO     | executing command: cat /etc/os-release
[2025-06-05 14:50:51] 2025-06-05 18:50:34,162 | INFO     | cat /etc/os-release:
[2025-06-05 14:50:51] NAME="CentOS Linux"
[2025-06-05 14:50:51] VERSION="7 (Core)"
[2025-06-05 14:50:51] ID="centos"
[2025-06-05 14:50:51] ID_LIKE="rhel fedora"
[2025-06-05 14:50:51] VERSION_ID="7"
[2025-06-05 14:50:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 14:50:51] ANSI_COLOR="0;31"
[2025-06-05 14:50:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 14:50:51] HOME_URL="https://www.centos.org/"
[2025-06-05 14:50:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 14:50:51] 
[2025-06-05 14:50:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 14:50:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 14:50:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 14:50:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 14:50:51] 
[2025-06-05 14:50:51] 2025-06-05 18:50:34,163 | INFO     | **************************************
[2025-06-05 14:50:51] 2025-06-05 18:50:34,562 | INFO     | PID=21737 has CPU usage=8.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-05 14:50:51] 2025-06-05 18:50:34,666 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 14:50:51] 2025-06-05 18:50:34,682 | INFO     | sufficient remaining disk space (29385293824 B)
[2025-06-05 14:50:51] 2025-06-05 18:50:34,682 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 14:50:51] 2025-06-05 18:50:34,682 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 14:50:51] 2025-06-05 18:50:34,682 | INFO     | update_server=False
[2025-06-05 14:50:51] 2025-06-05 18:50:34,683 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 14:50:51] 2025-06-05 18:50:34,683 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 14:50:51] 2025-06-05 18:50:34,683 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 14:50:51] 2025-06-05 18:50:34,683 | INFO     | will abort loop
[2025-06-05 14:50:51] 2025-06-05 18:50:34,684 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 14:50:51] 2025-06-05 18:50:34,684 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 14:50:51] 2025-06-05 18:50:34,684 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 14:50:51] 2025-06-05 18:50:34,685 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 14:50:51] 2025-06-05 18:50:34,685 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 14:50:51] 2025-06-05 18:50:34,883 | INFO     | all payload control threads have been joined
[2025-06-05 14:50:51] 2025-06-05 18:50:35,473 | INFO     | all data control threads have been joined
[2025-06-05 14:50:51] 2025-06-05 18:50:35,687 | INFO     | [job] queue monitor thread has finished
[2025-06-05 14:50:51] 2025-06-05 18:50:35,688 | INFO     | [job] retrieve thread has finished
[2025-06-05 14:50:51] 2025-06-05 18:50:35,689 | INFO     | [job] job monitor thread has finished
[2025-06-05 14:50:51] 2025-06-05 18:50:35,709 | INFO     | [data] copytool_in thread has finished
[2025-06-05 14:50:51] 2025-06-05 18:50:35,724 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 14:50:51] 2025-06-05 18:50:35,888 | INFO     | [payload] control thread has finished
[2025-06-05 14:50:51] 2025-06-05 18:50:35,978 | INFO     | all job control threads have been joined
[2025-06-05 14:50:51] 2025-06-05 18:50:36,104 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 14:50:51] 2025-06-05 18:50:36,271 | INFO     | [payload] validate_post thread has finished
[2025-06-05 14:50:51] 2025-06-05 18:50:36,479 | INFO     | [data] control thread has finished
[2025-06-05 14:50:51] 2025-06-05 18:50:36,594 | INFO     | [job] validate thread has finished
[2025-06-05 14:50:51] 2025-06-05 18:50:36,596 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 14:50:51] 2025-06-05 18:50:36,939 | INFO     | [payload] failed_post thread has finished
[2025-06-05 14:50:51] 2025-06-05 18:50:36,982 | INFO     | [job] control thread has finished
[2025-06-05 14:50:51] 2025-06-05 18:50:37,190 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 14:50:51] 2025-06-05 18:50:38,109 | INFO     | [data] copytool_out thread has finished
[2025-06-05 14:50:51] 2025-06-05 18:50:38,690 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 14:50:51] 2025-06-05 18:50:45,363 | INFO     | job.realtimelogging is not enabled
[2025-06-05 14:50:51] 2025-06-05 18:50:46,369 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 14:50:51] 2025-06-05 18:50:46,411 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140449612252992)>', '<ExcThread(monitor, started 140448509191936)>']
[2025-06-05 14:50:51] 2025-06-05 18:50:46,746 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 14:50:51] 2025-06-05 18:50:46,746 | INFO     | [monitor] control thread has ended
[2025-06-05 14:50:51] 2025-06-05 18:50:51,436 | INFO     | all workflow threads have been joined
[2025-06-05 14:50:51] 2025-06-05 18:50:51,436 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 14:50:51] 2025-06-05 18:50:51,441 | INFO     | traces error code: 0
[2025-06-05 14:50:51] 2025-06-05 18:50:51,442 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 14:50:51] 2025-06-05 18:50:51,522 [wrapper] ==== pilot stdout END ====
[2025-06-05 14:50:51] 2025-06-05 18:50:51,526 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 14:50:51] 2025-06-05 18:50:51,530 [wrapper] pilotpid: 21737
[2025-06-05 14:50:51] 2025-06-05 18:50:51,534 [wrapper] Pilot exit status: 0
[2025-06-05 14:50:51] 2025-06-05 18:50:51,551 [wrapper] pandaids: 6669238426
[2025-06-05 14:50:51] 2025-06-05 18:50:51,588 [wrapper] cleanup supervisor_pilot 21241 21738
[2025-06-05 14:50:51] 2025-06-05 18:50:51,592 [wrapper] Test setup, not cleaning
[2025-06-05 14:50:51] 2025-06-05 18:50:51,596 [wrapper] apfmon messages muted
[2025-06-05 14:50:51] 2025-06-05 18:50:51,601 [wrapper] ==== wrapper stdout END ====
[2025-06-05 14:50:51] 2025-06-05 18:50:51,605 [wrapper] ==== wrapper stderr END ====
[2025-06-05 14:50:51]  *** Error codes and diagnostics ***
[2025-06-05 14:50:51]     "exeErrorCode": 0,
[2025-06-05 14:50:51]     "exeErrorDiag": "",
[2025-06-05 14:50:51]     "pilotErrorCode": 0,
[2025-06-05 14:50:51]     "pilotErrorDiag": "",
[2025-06-05 14:50:51]  *** Listing of results directory ***
[2025-06-05 14:50:51] total 415472
[2025-06-05 14:50:51] -rw-r--r-- 1 boincer umatlas    495897 May 29 00:11 pilot3.tar.gz
[2025-06-05 14:50:51] -rwx------ 1 boincer umatlas     37140 May 29 00:48 runpilot2-wrapper.sh
[2025-06-05 14:50:51] -rw-r--r-- 1 boincer umatlas      5111 May 29 00:48 queuedata.json
[2025-06-05 14:50:51] -rw-r--r-- 1 boincer umatlas       100 Jun  5 13:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 14:50:51] -rwxr-xr-x 1 boincer umatlas      7986 Jun  5 13:18 run_atlas
[2025-06-05 14:50:51] -rw-r--r-- 1 boincer umatlas       105 Jun  5 13:18 job.xml
[2025-06-05 14:50:51] -rw-r--r-- 2 boincer umatlas 222712458 Jun  5 13:18 EVNT.44871834._003738.pool.root.1
[2025-06-05 14:50:51] -rw-r--r-- 2 boincer umatlas     15093 Jun  5 13:18 start_atlas.sh
[2025-06-05 14:50:51] drwxrwx--x 2 boincer umatlas      4096 Jun  5 13:18 shared
[2025-06-05 14:50:51] -rw-r--r-- 2 boincer umatlas    508876 Jun  5 13:18 input.tar.gz
[2025-06-05 14:50:51] -rw-r--r-- 1 boincer umatlas         0 Jun  5 13:18 boinc_lockfile
[2025-06-05 14:50:51] -rw-r--r-- 1 boincer umatlas      2559 Jun  5 13:18 pandaJob.out
[2025-06-05 14:50:51] -rw------- 1 boincer umatlas    983229 Jun  5 13:19 agis_schedconf.cvmfs.json
[2025-06-05 14:50:51] -rw------- 1 boincer umatlas   1598969 Jun  5 13:19 agis_ddmendpoints.agis.ALL.json
[2025-06-05 14:50:51] drwx------ 4 boincer umatlas      4096 Jun  5 13:19 pilot3
[2025-06-05 14:50:51] -rw-r--r-- 1 boincer umatlas      5868 Jun  5 14:45 init_data.xml
[2025-06-05 14:50:51] -rw------- 1 boincer umatlas 197112970 Jun  5 14:49 HITS.44871837._095192.pool.root.1
[2025-06-05 14:50:51] -rw-r--r-- 1 boincer umatlas       529 Jun  5 14:50 boinc_task_state.xml
[2025-06-05 14:50:51] -rw------- 1 boincer umatlas        95 Jun  5 14:50 pilot_heartbeat.json
[2025-06-05 14:50:51] -rw------- 1 boincer umatlas      1045 Jun  5 14:50 memory_monitor_summary.json
[2025-06-05 14:50:51] -rw------- 1 boincer umatlas    377400 Jun  5 14:50 log.44871837._095192.job.log.tgz.1
[2025-06-05 14:50:51] -rw------- 1 boincer umatlas      7750 Jun  5 14:50 heartbeat.json
[2025-06-05 14:50:51] -rw-r--r-- 1 boincer umatlas      8192 Jun  5 14:50 boinc_mmap_file
[2025-06-05 14:50:51] -rw-r--r-- 1 boincer umatlas        27 Jun  5 14:50 wrapper_checkpoint.txt
[2025-06-05 14:50:51] -rw------- 1 boincer umatlas      4867 Jun  5 14:50 pilotlog.txt
[2025-06-05 14:50:51] -rw------- 1 boincer umatlas    513274 Jun  5 14:50 log.44871837._095192.job.log.1
[2025-06-05 14:50:51] -rw------- 1 boincer umatlas       357 Jun  5 14:50 output.list
[2025-06-05 14:50:51] -rw-r--r-- 1 boincer umatlas       620 Jun  5 14:50 runtime_log
[2025-06-05 14:50:51] -rw------- 1 boincer umatlas    911360 Jun  5 14:50 result.tar.gz
[2025-06-05 14:50:51] -rw-r--r-- 1 boincer umatlas      8661 Jun  5 14:50 runtime_log.err
[2025-06-05 14:50:51] -rw------- 1 boincer umatlas       659 Jun  5 14:50 rJtKDmRNke7n9Rq4apOajLDm4fhM0noT9bVof3QYDmqfUKDmtfPdGo.diag
[2025-06-05 14:50:51] -rw-r--r-- 1 boincer umatlas     22007 Jun  5 14:50 stderr.txt
[2025-06-05 14:50:51] HITS file was successfully produced:
[2025-06-05 14:50:51] -rw------- 1 boincer umatlas 197112970 Jun  5 14:49 shared/HITS.pool.root.1
[2025-06-05 14:50:51]  *** Contents of shared directory: ***
[2025-06-05 14:50:51] total 411404
[2025-06-05 14:50:51] -rw-r--r-- 2 boincer umatlas 222712458 Jun  5 13:18 ATLAS.root_0
[2025-06-05 14:50:51] -rw-r--r-- 2 boincer umatlas     15093 Jun  5 13:18 start_atlas.sh
[2025-06-05 14:50:51] -rw-r--r-- 2 boincer umatlas    508876 Jun  5 13:18 input.tar.gz
[2025-06-05 14:50:51] -rw------- 1 boincer umatlas 197112970 Jun  5 14:49 HITS.pool.root.1
[2025-06-05 14:50:51] -rw------- 1 boincer umatlas    911360 Jun  5 14:50 result.tar.gz
14:50:53 (18096): run_atlas exited; CPU time 60091.994918
14:50:53 (18096): called boinc_finish(0)

</stderr_txt>
]]>

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