Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:18:52 (3391852): wrapper (7.7.26015): starting
13:18:52 (3391852): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 13:18:52] Arguments: --nthreads 8
[2025-06-05 13:18:52] Threads: 8
[2025-06-05 13:18:52] Checking for CVMFS
[2025-06-05 13:18:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 13:18:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 13:18:52] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 13:18:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 13:18:52] 2.12.6.0 5334 1553 174560 146827 1 65 19266005 32935936 22604 16776704 0 6609383 99.477 7702353 20711 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-05 13:18:52] CVMFS is ok
[2025-06-05 13:18:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 13:18:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 13:18:52] Further information can be found at the LHC@home message board.
[2025-06-05 13:18:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 13:18:52] Checking for apptainer binary...
[2025-06-05 13:18:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 13:18:52] Running /usr/bin/apptainer --version
[2025-06-05 13:18:52] apptainer version 1.4.1-1.el9
[2025-06-05 13:18:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 13:18:53] c7-16-9.aglt2.org
[2025-06-05 13:18:53] apptainer works
[2025-06-05 13:18:53] Set ATHENA_PROC_NUMBER=8
[2025-06-05 13:18:53] Set ATHENA_CORE_NUMBER=8
[2025-06-05 13:18:53] Starting ATLAS job with PandaID=6669090333
[2025-06-05 13:18:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 15:27:53]  *** The last 200 lines of the pilot log: ***
[2025-06-05 15:27:53] 2025-06-05 19:27:35,334 | INFO     | executing command: lscpu
[2025-06-05 15:27:53] 2025-06-05 19:27:35,474 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 15:27:53] 2025-06-05 19:27:35,920 | INFO     | monitor loop #526: job 0:6669090333 is in state 'finished'
[2025-06-05 15:27:53] 2025-06-05 19:27:35,921 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 15:27:53] 2025-06-05 19:27:38,428 | INFO     | monitor loop #527: job 0:6669090333 is in state 'finished'
[2025-06-05 15:27:53] 2025-06-05 19:27:38,429 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 15:27:53] 2025-06-05 19:27:40,799 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 15:27:53] 2025-06-05 19:27:40,799 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6669090333/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 15:27:53] 2025-06-05 19:27:40,800 | INFO     | extracted standard info from prmon json
[2025-06-05 15:27:53] 2025-06-05 19:27:40,801 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 15:27:53] 2025-06-05 19:27:40,801 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 15:27:53] 2025-06-05 19:27:40,802 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 15:27:53] 2025-06-05 19:27:40,802 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 15:27:53] 2025-06-05 19:27:40,804 | INFO     | fitting pss+swap vs Time
[2025-06-05 15:27:53] 2025-06-05 19:27:40,805 | INFO     | sum of square deviations: 620244187.5
[2025-06-05 15:27:53] 2025-06-05 19:27:40,805 | INFO     | sum of deviations: 8799752335.0
[2025-06-05 15:27:53] 2025-06-05 19:27:40,805 | INFO     | mean x: 1749147786.5
[2025-06-05 15:27:53] 2025-06-05 19:27:40,805 | INFO     | mean y: 2243337.6666666665
[2025-06-05 15:27:53] 2025-06-05 19:27:40,805 | INFO     | -- intersect: -24813897834.97988
[2025-06-05 15:27:53] 2025-06-05 19:27:40,805 | INFO     | intersect: -24813897834.97988
[2025-06-05 15:27:53] 2025-06-05 19:27:40,805 | INFO     | chi2: 1.5298463258263164
[2025-06-05 15:27:53] 2025-06-05 19:27:40,806 | INFO     | sum of square deviations: 549294020.0
[2025-06-05 15:27:53] 2025-06-05 19:27:40,806 | INFO     | sum of deviations: 9250714050.000004
[2025-06-05 15:27:53] 2025-06-05 19:27:40,806 | INFO     | mean x: 1749147634.0
[2025-06-05 15:27:53] 2025-06-05 19:27:40,806 | INFO     | mean y: 2244255.619834711
[2025-06-05 15:27:53] 2025-06-05 19:27:40,806 | INFO     | -- intersect: -29455321281.627525
[2025-06-05 15:27:53] 2025-06-05 19:27:40,806 | INFO     | intersect: -29455321281.627525
[2025-06-05 15:27:53] 2025-06-05 19:27:40,806 | INFO     | chi2: 1.5270702686315005
[2025-06-05 15:27:53] 2025-06-05 19:27:40,806 | INFO     | current chi2=1.5270702686315005 (change=0.18145987266508298 %)
[2025-06-05 15:27:53] 2025-06-05 19:27:40,806 | INFO     | right removable region: 120
[2025-06-05 15:27:53] 2025-06-05 19:27:40,806 | INFO     | sum of square deviations: 549294020.0
[2025-06-05 15:27:53] 2025-06-05 19:27:40,807 | INFO     | sum of deviations: -9107917564.0
[2025-06-05 15:27:53] 2025-06-05 19:27:40,807 | INFO     | mean x: 1749147939.0
[2025-06-05 15:27:53] 2025-06-05 19:27:40,807 | INFO     | mean y: 2281211.140495868
[2025-06-05 15:27:53] 2025-06-05 19:27:40,807 | INFO     | -- intersect: 29005136977.98919
[2025-06-05 15:27:53] 2025-06-05 19:27:40,807 | INFO     | intersect: 29005136977.98919
[2025-06-05 15:27:53] 2025-06-05 19:27:40,807 | INFO     | chi2: 0.04030456750143083
[2025-06-05 15:27:53] 2025-06-05 19:27:40,807 | INFO     | current chi2=0.04030456750143083 (change=97.36544992650414 %)
[2025-06-05 15:27:53] 2025-06-05 19:27:40,807 | INFO     | sum of square deviations: 483971865.0
[2025-06-05 15:27:53] 2025-06-05 19:27:40,808 | INFO     | sum of deviations: -9143728925.499998
[2025-06-05 15:27:53] 2025-06-05 19:27:40,808 | INFO     | mean x: 1749148091.5
[2025-06-05 15:27:53] 2025-06-05 19:27:40,808 | INFO     | mean y: 2281268.2327586208
[2025-06-05 15:27:53] 2025-06-05 19:27:40,808 | INFO     | -- intersect: 33049111375.25079
[2025-06-05 15:27:53] 2025-06-05 19:27:40,808 | INFO     | intersect: 33049111375.25079
[2025-06-05 15:27:53] 2025-06-05 19:27:40,808 | INFO     | chi2: 0.03556212601094647
[2025-06-05 15:27:53] 2025-06-05 19:27:40,808 | INFO     | current chi2=0.03556212601094647 (change=11.766511302511796 %)
[2025-06-05 15:27:53] 2025-06-05 19:27:40,808 | INFO     | left removable region: 20
[2025-06-05 15:27:53] 2025-06-05 19:27:40,808 | INFO     | sum of square deviations: 310052325.0
[2025-06-05 15:27:53] 2025-06-05 19:27:40,808 | INFO     | sum of deviations: -6308986671.0
[2025-06-05 15:27:53] 2025-06-05 19:27:40,808 | INFO     | mean x: 1749148213.5
[2025-06-05 15:27:53] 2025-06-05 19:27:40,808 | INFO     | mean y: 2278932.86
[2025-06-05 15:27:53] 2025-06-05 19:27:40,808 | INFO     | -- intersect: 35594183507.59577
[2025-06-05 15:27:53] 2025-06-05 19:27:40,809 | INFO     | intersect: 35594183507.59577
[2025-06-05 15:27:53] 2025-06-05 19:27:40,809 | INFO     | chi2: 0.029692493024877028
[2025-06-05 15:27:53] 2025-06-05 19:27:40,809 | INFO     | -- intersect: 35594183507.59577
[2025-06-05 15:27:53] 2025-06-05 19:27:40,809 | INFO     | current memory leak: -20.35 B/s (using 100 data points, chi2=0.03)
[2025-06-05 15:27:53] 2025-06-05 19:27:40,809 | INFO     | ..............................
[2025-06-05 15:27:53] 2025-06-05 19:27:40,809 | INFO     | . Timing measurements:
[2025-06-05 15:27:53] 2025-06-05 19:27:40,809 | INFO     | . get job = 0 s
[2025-06-05 15:27:53] 2025-06-05 19:27:40,810 | INFO     | . initial setup = 2 s
[2025-06-05 15:27:53] 2025-06-05 19:27:40,810 | INFO     | . payload setup = 8 s
[2025-06-05 15:27:53] 2025-06-05 19:27:40,810 | INFO     | . stage-in = 0 s
[2025-06-05 15:27:53] 2025-06-05 19:27:40,810 | INFO     | . payload execution = 7675 s
[2025-06-05 15:27:53] 2025-06-05 19:27:40,810 | INFO     | . stage-out = 0 s
[2025-06-05 15:27:53] 2025-06-05 19:27:40,810 | INFO     | . log creation = 0 s
[2025-06-05 15:27:53] 2025-06-05 19:27:40,810 | INFO     | ..............................
[2025-06-05 15:27:53] 2025-06-05 19:27:40,880 | INFO     | 
[2025-06-05 15:27:53] 2025-06-05 19:27:40,880 | INFO     | job summary report
[2025-06-05 15:27:53] 2025-06-05 19:27:40,880 | INFO     | --------------------------------------------------
[2025-06-05 15:27:53] 2025-06-05 19:27:40,880 | INFO     | PanDA job id: 6669090333
[2025-06-05 15:27:53] 2025-06-05 19:27:40,880 | INFO     | task id: 44871837
[2025-06-05 15:27:53] 2025-06-05 19:27:40,880 | INFO     | errors: (none)
[2025-06-05 15:27:53] 2025-06-05 19:27:40,880 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 15:27:53] 2025-06-05 19:27:40,880 | INFO     | pilot state: finished 
[2025-06-05 15:27:53] 2025-06-05 19:27:40,880 | INFO     | transexitcode: 0
[2025-06-05 15:27:53] 2025-06-05 19:27:40,880 | INFO     | exeerrorcode: 0
[2025-06-05 15:27:53] 2025-06-05 19:27:40,881 | INFO     | exeerrordiag: 
[2025-06-05 15:27:53] 2025-06-05 19:27:40,881 | INFO     | exitcode: 0
[2025-06-05 15:27:53] 2025-06-05 19:27:40,881 | INFO     | exitmsg: OK
[2025-06-05 15:27:53] 2025-06-05 19:27:40,881 | INFO     | cpuconsumptiontime: 41391 s
[2025-06-05 15:27:53] 2025-06-05 19:27:40,881 | INFO     | nevents: 400
[2025-06-05 15:27:53] 2025-06-05 19:27:40,881 | INFO     | neventsw: 0
[2025-06-05 15:27:53] 2025-06-05 19:27:40,881 | INFO     | pid: 3412045
[2025-06-05 15:27:53] 2025-06-05 19:27:40,881 | INFO     | pgrp: 3412045
[2025-06-05 15:27:53] 2025-06-05 19:27:40,881 | INFO     | corecount: 8
[2025-06-05 15:27:53] 2025-06-05 19:27:40,881 | INFO     | event service: False
[2025-06-05 15:27:53] 2025-06-05 19:27:40,881 | INFO     | sizes: {0: 2397221, 1: 2397420, 6: 2397626, 11: 2397654, 7687: 2425168, 7689: 2434109, 7692: 2434293, 7701: 2434463}
[2025-06-05 15:27:53] 2025-06-05 19:27:40,881 | INFO     | --------------------------------------------------
[2025-06-05 15:27:53] 2025-06-05 19:27:40,882 | INFO     | 
[2025-06-05 15:27:53] 2025-06-05 19:27:40,882 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 15:27:53] 2025-06-05 19:27:40,908 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 15:27:53] 2025-06-05 19:27:40,908 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 15:27:53] 2025-06-05 19:27:40,908 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 15:27:53] 2025-06-05 19:27:40,908 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 15:27:53] 2025-06-05 19:27:40,908 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 15:27:53] 2025-06-05 19:27:40,908 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 15:27:53] 2025-06-05 19:27:40,909 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 15:27:53] 2025-06-05 19:27:40,909 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 15:27:53] 2025-06-05 19:27:40,909 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 15:27:53] 2025-06-05 19:27:40,909 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 15:27:53] 2025-06-05 19:27:40,909 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 15:27:53] 2025-06-05 19:27:40,909 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 15:27:53] 2025-06-05 19:27:40,909 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 15:27:53] 2025-06-05 19:27:40,909 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 15:27:53] 2025-06-05 19:27:40,909 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 15:27:53] 2025-06-05 19:27:40,909 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 15:27:53] 2025-06-05 19:27:40,909 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 15:27:53] 2025-06-05 19:27:40,909 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 15:27:53] 2025-06-05 19:27:40,909 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 15:27:53] 2025-06-05 19:27:40,910 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 15:27:53] 2025-06-05 19:27:40,910 | INFO     | job 6669090333 has completed (purged errors)
[2025-06-05 15:27:53] 2025-06-05 19:27:40,910 | INFO     | overall cleanup function is called
[2025-06-05 15:27:53] 2025-06-05 19:27:41,924 | INFO     | --- collectZombieJob: --- 10, [3412045]
[2025-06-05 15:27:53] 2025-06-05 19:27:41,925 | INFO     | zombie collector waiting for pid 3412045
[2025-06-05 15:27:53] 2025-06-05 19:27:41,925 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 15:27:53] 2025-06-05 19:27:41,925 | INFO     | collected zombie processes
[2025-06-05 15:27:53] 2025-06-05 19:27:41,925 | INFO     | will attempt to kill all subprocesses of pid=3412045
[2025-06-05 15:27:53] 2025-06-05 19:27:42,375 | INFO     | process IDs to be killed: [3412045] (in reverse order)
[2025-06-05 15:27:53] 2025-06-05 19:27:42,491 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 15:27:53] 2025-06-05 19:27:42,492 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 15:27:53] 2025-06-05 19:27:42,509 | INFO     | did not find any defunct processes belonging to 3412045
[2025-06-05 15:27:53] 2025-06-05 19:27:42,525 | INFO     | did not find any defunct processes belonging to 3412045
[2025-06-05 15:27:53] 2025-06-05 19:27:42,525 | INFO     | ready for new job
[2025-06-05 15:27:53] 2025-06-05 19:27:42,525 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 15:27:53] 2025-06-05 19:27:42,527 | INFO     | **************************************
[2025-06-05 15:27:53] 2025-06-05 19:27:42,527 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 15:27:53] 2025-06-05 19:27:42,528 | INFO     | **************************************
[2025-06-05 15:27:53] 2025-06-05 19:27:42,528 | INFO     | 
[2025-06-05 15:27:53] 2025-06-05 19:27:42,532 | INFO     | architecture information:
[2025-06-05 15:27:53] 2025-06-05 19:27:42,533 | INFO     | executing command: cat /etc/os-release
[2025-06-05 15:27:53] 2025-06-05 19:27:42,548 | INFO     | cat /etc/os-release:
[2025-06-05 15:27:53] NAME="CentOS Linux"
[2025-06-05 15:27:53] VERSION="7 (Core)"
[2025-06-05 15:27:53] ID="centos"
[2025-06-05 15:27:53] ID_LIKE="rhel fedora"
[2025-06-05 15:27:53] VERSION_ID="7"
[2025-06-05 15:27:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 15:27:53] ANSI_COLOR="0;31"
[2025-06-05 15:27:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 15:27:53] HOME_URL="https://www.centos.org/"
[2025-06-05 15:27:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 15:27:53] 
[2025-06-05 15:27:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 15:27:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 15:27:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 15:27:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 15:27:53] 
[2025-06-05 15:27:53] 2025-06-05 19:27:42,548 | INFO     | **************************************
[2025-06-05 15:27:53] 2025-06-05 19:27:43,055 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 15:27:53] 2025-06-05 19:27:43,089 | INFO     | sufficient remaining disk space (75316068352 B)
[2025-06-05 15:27:53] 2025-06-05 19:27:43,089 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 15:27:53] 2025-06-05 19:27:43,089 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 15:27:53] 2025-06-05 19:27:43,090 | INFO     | update_server=False
[2025-06-05 15:27:53] 2025-06-05 19:27:43,090 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 15:27:53] 2025-06-05 19:27:43,090 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 15:27:53] 2025-06-05 19:27:43,090 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 15:27:53] 2025-06-05 19:27:43,154 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 15:27:53] 2025-06-05 19:27:43,154 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 15:27:53] 2025-06-05 19:27:43,154 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 15:27:53] 2025-06-05 19:27:43,446 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-05 15:27:53] 2025-06-05 19:27:43,446 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-05 15:27:53] 2025-06-05 19:27:43,446 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 15:27:53] 2025-06-05 19:27:43,446 | INFO     | will abort loop
[2025-06-05 15:27:53] 2025-06-05 19:27:43,650 | INFO     | all job control threads have been joined
[2025-06-05 15:27:53] 2025-06-05 19:27:43,703 | INFO     | all data control threads have been joined
[2025-06-05 15:27:53] 2025-06-05 19:27:44,099 | INFO     | [job] retrieve thread has finished
[2025-06-05 15:27:53] 2025-06-05 19:27:44,263 | INFO     | all payload control threads have been joined
[2025-06-05 15:27:53] 2025-06-05 19:27:44,363 | INFO     | [payload] validate_post thread has finished
[2025-06-05 15:27:53] 2025-06-05 19:27:44,404 | INFO     | [payload] failed_post thread has finished
[2025-06-05 15:27:53] 2025-06-05 19:27:44,452 | INFO     | [job] job monitor thread has finished
[2025-06-05 15:27:53] 2025-06-05 19:27:44,554 | INFO     | [job] validate thread has finished
[2025-06-05 15:27:53] 2025-06-05 19:27:44,662 | INFO     | [job] control thread has finished
[2025-06-05 15:27:53] 2025-06-05 19:27:44,709 | INFO     | [data] control thread has finished
[2025-06-05 15:27:53] 2025-06-05 19:27:44,727 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 15:27:53] 2025-06-05 19:27:45,070 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 15:27:53] 2025-06-05 19:27:45,097 | INFO     | [data] copytool_out thread has finished
[2025-06-05 15:27:53] 2025-06-05 19:27:45,140 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 15:27:53] 2025-06-05 19:27:45,194 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 15:27:53] 2025-06-05 19:27:45,269 | INFO     | [payload] control thread has finished
[2025-06-05 15:27:53] 2025-06-05 19:27:45,556 | INFO     | [data] copytool_in thread has finished
[2025-06-05 15:27:53] 2025-06-05 19:27:45,892 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 15:27:53] 2025-06-05 19:27:46,898 | INFO     | [job] queue monitor thread has finished
[2025-06-05 15:27:53] 2025-06-05 19:27:47,097 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 15:27:53] 2025-06-05 19:27:47,679 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140257762510656)>', '<ExcThread(monitor, started 140257408292608)>']
[2025-06-05 15:27:53] 2025-06-05 19:27:48,184 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 15:27:53] 2025-06-05 19:27:48,184 | INFO     | [monitor] control thread has ended
[2025-06-05 15:27:53] 2025-06-05 19:27:52,706 | INFO     | all workflow threads have been joined
[2025-06-05 15:27:53] 2025-06-05 19:27:52,707 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 15:27:53] 2025-06-05 19:27:52,707 | INFO     | traces error code: 0
[2025-06-05 15:27:53] 2025-06-05 19:27:52,707 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 15:27:53] 2025-06-05 19:27:53,002 [wrapper] ==== pilot stdout END ====
[2025-06-05 15:27:53] 2025-06-05 19:27:53,007 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 15:27:53] 2025-06-05 19:27:53,011 [wrapper] pilotpid: 3395551
[2025-06-05 15:27:53] 2025-06-05 19:27:53,014 [wrapper] Pilot exit status: 0
[2025-06-05 15:27:53] 2025-06-05 19:27:53,029 [wrapper] pandaids: 6669090333
[2025-06-05 15:27:53] 2025-06-05 19:27:53,131 [wrapper] cleanup supervisor_pilot 3870395 3395552
[2025-06-05 15:27:53] 2025-06-05 19:27:53,135 [wrapper] Test setup, not cleaning
[2025-06-05 15:27:53] 2025-06-05 19:27:53,137 [wrapper] apfmon messages muted
[2025-06-05 15:27:53] 2025-06-05 19:27:53,146 [wrapper] ==== wrapper stdout END ====
[2025-06-05 15:27:53] 2025-06-05 19:27:53,155 [wrapper] ==== wrapper stderr END ====
[2025-06-05 15:27:53]  *** Error codes and diagnostics ***
[2025-06-05 15:27:53]     "exeErrorCode": 0,
[2025-06-05 15:27:53]     "exeErrorDiag": "",
[2025-06-05 15:27:53]     "pilotErrorCode": 0,
[2025-06-05 15:27:53]     "pilotErrorDiag": "",
[2025-06-05 15:27:53]  *** Listing of results directory ***
[2025-06-05 15:27:53] total 419536
[2025-06-05 15:27:53] -rw-r--r--. 1 boincer umatlas    495897 May 28 21:34 pilot3.tar.gz
[2025-06-05 15:27:53] -rwx------. 1 boincer umatlas     37140 May 28 21:39 runpilot2-wrapper.sh
[2025-06-05 15:27:53] -rw-r--r--. 1 boincer umatlas      5111 May 28 21:39 queuedata.json
[2025-06-05 15:27:53] -rw-r--r--. 1 boincer umatlas       100 Jun  5 13:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 15:27:53] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  5 13:18 run_atlas
[2025-06-05 15:27:53] -rw-r--r--. 1 boincer umatlas       105 Jun  5 13:18 job.xml
[2025-06-05 15:27:53] -rw-r--r--. 2 boincer umatlas 225862915 Jun  5 13:18 EVNT.44871834._003627.pool.root.1
[2025-06-05 15:27:53] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 13:18 start_atlas.sh
[2025-06-05 15:27:53] drwxrwx--x. 2 boincer umatlas      4096 Jun  5 13:18 shared
[2025-06-05 15:27:53] -rw-r--r--. 2 boincer umatlas    508877 Jun  5 13:18 input.tar.gz
[2025-06-05 15:27:53] -rw-r--r--. 1 boincer umatlas         0 Jun  5 13:18 boinc_lockfile
[2025-06-05 15:27:53] -rw-r--r--. 1 boincer umatlas      2559 Jun  5 13:18 pandaJob.out
[2025-06-05 15:27:53] -rw-------. 1 boincer umatlas    983229 Jun  5 13:19 agis_schedconf.cvmfs.json
[2025-06-05 15:27:53] -rw-------. 1 boincer umatlas   1598969 Jun  5 13:19 agis_ddmendpoints.agis.ALL.json
[2025-06-05 15:27:53] drwx------. 4 boincer umatlas      4096 Jun  5 13:19 pilot3
[2025-06-05 15:27:53] -rw-------. 1 boincer umatlas 197853862 Jun  5 15:26 HITS.44871837._093277.pool.root.1
[2025-06-05 15:27:53] -rw-r--r--. 1 boincer umatlas       529 Jun  5 15:26 boinc_task_state.xml
[2025-06-05 15:27:53] -rw-r--r--. 1 boincer umatlas      6930 Jun  5 15:27 init_data.xml
[2025-06-05 15:27:53] -rw-------. 1 boincer umatlas        95 Jun  5 15:27 pilot_heartbeat.json
[2025-06-05 15:27:53] -rw-------. 1 boincer umatlas      1036 Jun  5 15:27 memory_monitor_summary.json
[2025-06-05 15:27:53] -rw-------. 1 boincer umatlas    329070 Jun  5 15:27 log.44871837._093277.job.log.tgz.1
[2025-06-05 15:27:53] -rw-------. 1 boincer umatlas      7692 Jun  5 15:27 heartbeat.json
[2025-06-05 15:27:53] -rw-------. 1 boincer umatlas      4539 Jun  5 15:27 pilotlog.txt
[2025-06-05 15:27:53] -rw-r--r--. 1 boincer umatlas        27 Jun  5 15:27 wrapper_checkpoint.txt
[2025-06-05 15:27:53] -rw-------. 1 boincer umatlas    704787 Jun  5 15:27 log.44871837._093277.job.log.1
[2025-06-05 15:27:53] -rw-r--r--. 1 boincer umatlas      8192 Jun  5 15:27 boinc_mmap_file
[2025-06-05 15:27:53] -rw-------. 1 boincer umatlas       357 Jun  5 15:27 output.list
[2025-06-05 15:27:53] -rw-r--r--. 1 boincer umatlas       620 Jun  5 15:27 runtime_log
[2025-06-05 15:27:53] -rw-------. 1 boincer umatlas   1054720 Jun  5 15:27 result.tar.gz
[2025-06-05 15:27:53] -rw-r--r--. 1 boincer umatlas      8654 Jun  5 15:27 runtime_log.err
[2025-06-05 15:27:53] -rw-------. 1 boincer umatlas       653 Jun  5 15:27 3fDODmPQhe7n9Rq4apOajLDm4fhM0noT9bVof3QYDmtPUKDmLk6XMm.diag
[2025-06-05 15:27:53] -rw-r--r--. 1 boincer umatlas      2136 Jun  5 15:27 stderr.txt
[2025-06-05 15:27:53] HITS file was successfully produced:
[2025-06-05 15:27:53] -rw-------. 1 boincer umatlas 197853862 Jun  5 15:26 shared/HITS.pool.root.1
[2025-06-05 15:27:53]  *** Contents of shared directory: ***
[2025-06-05 15:27:53] total 415348
[2025-06-05 15:27:53] -rw-r--r--. 2 boincer umatlas 225862915 Jun  5 13:18 ATLAS.root_0
[2025-06-05 15:27:53] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 13:18 start_atlas.sh
[2025-06-05 15:27:53] -rw-r--r--. 2 boincer umatlas    508877 Jun  5 13:18 input.tar.gz
[2025-06-05 15:27:53] -rw-------. 1 boincer umatlas 197853862 Jun  5 15:26 HITS.pool.root.1
[2025-06-05 15:27:53] -rw-------. 1 boincer umatlas   1054720 Jun  5 15:27 result.tar.gz
15:27:55 (3391852): run_atlas exited; CPU time 41485.352098
15:27:55 (3391852): called boinc_finish(0)

</stderr_txt>
]]>

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