Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:19:15 (2274094): wrapper (7.7.26015): starting
13:19:15 (2274094): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 13:19:15] Arguments: --nthreads 8
[2025-06-05 13:19:15] Threads: 8
[2025-06-05 13:19:15] Checking for CVMFS
[2025-06-05 13:19:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 13:19:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 13:19:15] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 13:19:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 13:19:15] 2.12.6.0 10346 3061 194108 146827 2 252 25215587 32935936 19878 16776704 0 28717131 99.807 10823872 31038 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-05 13:19:15] CVMFS is ok
[2025-06-05 13:19:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 13:19:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 13:19:15] Further information can be found at the LHC@home message board.
[2025-06-05 13:19:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 13:19:15] Checking for apptainer binary...
[2025-06-05 13:19:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 13:19:15] Running /usr/bin/apptainer --version
[2025-06-05 13:19:15] apptainer version 1.4.1-1.el9
[2025-06-05 13:19:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 13:19:15] c6-8-25-4.aglt2.org
[2025-06-05 13:19:15] apptainer works
[2025-06-05 13:19:15] Set ATHENA_PROC_NUMBER=8
[2025-06-05 13:19:15] Set ATHENA_CORE_NUMBER=8
[2025-06-05 13:19:15] Starting ATLAS job with PandaID=6668990367
[2025-06-05 13:19:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 16:51:24]  *** The last 200 lines of the pilot log: ***
[2025-06-05 16:51:24] 2025-06-05 20:51:02,171 | INFO     | number of running child processes to parent process 2305427: 1
[2025-06-05 16:51:24] 2025-06-05 20:51:02,171 | INFO     | maximum number of monitored processes: 6
[2025-06-05 16:51:24] 2025-06-05 20:51:04,675 | INFO     | monitor loop #801: job 0:6668990367 is in state 'finished'
[2025-06-05 16:51:24] 2025-06-05 20:51:04,675 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 16:51:24] 2025-06-05 20:51:07,180 | INFO     | monitor loop #802: job 0:6668990367 is in state 'finished'
[2025-06-05 16:51:24] 2025-06-05 20:51:07,180 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 16:51:24] 2025-06-05 20:51:09,684 | INFO     | monitor loop #803: job 0:6668990367 is in state 'finished'
[2025-06-05 16:51:24] 2025-06-05 20:51:09,684 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 16:51:24] 2025-06-05 20:51:10,334 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-05 16:51:24] 2025-06-05 20:51:10,334 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6668990367/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 16:51:24] 2025-06-05 20:51:10,335 | INFO     | extracted standard info from prmon json
[2025-06-05 16:51:24] 2025-06-05 20:51:10,335 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 16:51:24] 2025-06-05 20:51:10,335 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 16:51:24] 2025-06-05 20:51:10,335 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 16:51:24] 2025-06-05 20:51:10,335 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 16:51:24] 2025-06-05 20:51:10,342 | INFO     | fitting pss+swap vs Time
[2025-06-05 16:51:24] 2025-06-05 20:51:10,342 | INFO     | sum of square deviations: 2790302037.67307
[2025-06-05 16:51:24] 2025-06-05 20:51:10,344 | INFO     | sum of deviations: 23595059445.413456
[2025-06-05 16:51:24] 2025-06-05 20:51:10,344 | INFO     | mean x: 1749150304.6057692
[2025-06-05 16:51:24] 2025-06-05 20:51:10,344 | INFO     | mean y: 2163852.8221153845
[2025-06-05 16:51:24] 2025-06-05 20:51:10,344 | INFO     | -- intersect: -14788817502.928806
[2025-06-05 16:51:24] 2025-06-05 20:51:10,344 | INFO     | intersect: -14788817502.928806
[2025-06-05 16:51:24] 2025-06-05 20:51:10,344 | INFO     | chi2: 1.6999837555072268
[2025-06-05 16:51:24] 2025-06-05 20:51:10,345 | INFO     | sum of square deviations: 2593877157.615759
[2025-06-05 16:51:24] 2025-06-05 20:51:10,346 | INFO     | sum of deviations: 22241788812.49261
[2025-06-05 16:51:24] 2025-06-05 20:51:10,346 | INFO     | mean x: 1749150152.1083744
[2025-06-05 16:51:24] 2025-06-05 20:51:10,346 | INFO     | mean y: 2162801.8866995075
[2025-06-05 16:51:24] 2025-06-05 20:51:10,346 | INFO     | -- intersect: -14996322446.463995
[2025-06-05 16:51:24] 2025-06-05 20:51:10,346 | INFO     | intersect: -14996322446.463995
[2025-06-05 16:51:24] 2025-06-05 20:51:10,355 | INFO     | chi2: 1.7001055413649555
[2025-06-05 16:51:24] 2025-06-05 20:51:10,355 | INFO     | current chi2=1.7001055413649555 (change=-0.007163942439695215 %)
[2025-06-05 16:51:24] 2025-06-05 20:51:10,355 | INFO     | right removable region: 202
[2025-06-05 16:51:24] 2025-06-05 20:51:10,355 | INFO     | sum of square deviations: 2593863737.615759
[2025-06-05 16:51:24] 2025-06-05 20:51:10,356 | INFO     | sum of deviations: -8735496486.162573
[2025-06-05 16:51:24] 2025-06-05 20:51:10,357 | INFO     | mean x: 1749150457.1083744
[2025-06-05 16:51:24] 2025-06-05 20:51:10,357 | INFO     | mean y: 2188749.5073891627
[2025-06-05 16:51:24] 2025-06-05 20:51:10,357 | INFO     | -- intersect: 5892898215.180684
[2025-06-05 16:51:24] 2025-06-05 20:51:10,357 | INFO     | intersect: 5892898215.180684
[2025-06-05 16:51:24] 2025-06-05 20:51:10,357 | INFO     | chi2: 0.07502397649653657
[2025-06-05 16:51:24] 2025-06-05 20:51:10,357 | INFO     | current chi2=0.07502397649653657 (change=95.58678274110028 %)
[2025-06-05 16:51:24] 2025-06-05 20:51:10,358 | INFO     | sum of square deviations: 2406867475.055569
[2025-06-05 16:51:24] 2025-06-05 20:51:10,359 | INFO     | sum of deviations: -7927872884.333333
[2025-06-05 16:51:24] 2025-06-05 20:51:10,359 | INFO     | mean x: 1749150609.6111112
[2025-06-05 16:51:24] 2025-06-05 20:51:10,359 | INFO     | mean y: 2188080.787878788
[2025-06-05 16:51:24] 2025-06-05 20:51:10,359 | INFO     | -- intersect: 5763636865.262765
[2025-06-05 16:51:24] 2025-06-05 20:51:10,359 | INFO     | intersect: 5763636865.262765
[2025-06-05 16:51:24] 2025-06-05 20:51:10,359 | INFO     | chi2: 0.07308710826860898
[2025-06-05 16:51:24] 2025-06-05 20:51:10,360 | INFO     | current chi2=0.07308710826860898 (change=2.5816656466043253 %)
[2025-06-05 16:51:24] 2025-06-05 20:51:10,360 | INFO     | left removable region: 20
[2025-06-05 16:51:24] 2025-06-05 20:51:10,360 | INFO     | sum of square deviations: 1869237142.840651
[2025-06-05 16:51:24] 2025-06-05 20:51:10,370 | INFO     | sum of deviations: -6578186741.450547
[2025-06-05 16:51:24] 2025-06-05 20:51:10,370 | INFO     | mean x: 1749150731.6208792
[2025-06-05 16:51:24] 2025-06-05 20:51:10,371 | INFO     | mean y: 2185454.0659340657
[2025-06-05 16:51:24] 2025-06-05 20:51:10,371 | INFO     | -- intersect: 6157766192.238692
[2025-06-05 16:51:24] 2025-06-05 20:51:10,372 | INFO     | intersect: 6157766192.238692
[2025-06-05 16:51:24] 2025-06-05 20:51:10,372 | INFO     | chi2: 0.06654820756548856
[2025-06-05 16:51:24] 2025-06-05 20:51:10,372 | INFO     | -- intersect: 6157766192.238692
[2025-06-05 16:51:24] 2025-06-05 20:51:10,372 | INFO     | current memory leak: -3.52 B/s (using 182 data points, chi2=0.07)
[2025-06-05 16:51:24] 2025-06-05 20:51:10,373 | INFO     | ..............................
[2025-06-05 16:51:24] 2025-06-05 20:51:10,373 | INFO     | . Timing measurements:
[2025-06-05 16:51:24] 2025-06-05 20:51:10,373 | INFO     | . get job = 0 s
[2025-06-05 16:51:24] 2025-06-05 20:51:10,373 | INFO     | . initial setup = 2 s
[2025-06-05 16:51:24] 2025-06-05 20:51:10,373 | INFO     | . payload setup = 5 s
[2025-06-05 16:51:24] 2025-06-05 20:51:10,373 | INFO     | . stage-in = 0 s
[2025-06-05 16:51:24] 2025-06-05 20:51:10,373 | INFO     | . payload execution = 12665 s
[2025-06-05 16:51:24] 2025-06-05 20:51:10,373 | INFO     | . stage-out = 2 s
[2025-06-05 16:51:24] 2025-06-05 20:51:10,373 | INFO     | . log creation = 0 s
[2025-06-05 16:51:24] 2025-06-05 20:51:10,373 | INFO     | ..............................
[2025-06-05 16:51:24] 2025-06-05 20:51:10,525 | INFO     | 
[2025-06-05 16:51:24] 2025-06-05 20:51:10,525 | INFO     | job summary report
[2025-06-05 16:51:24] 2025-06-05 20:51:10,525 | INFO     | --------------------------------------------------
[2025-06-05 16:51:24] 2025-06-05 20:51:10,525 | INFO     | PanDA job id: 6668990367
[2025-06-05 16:51:24] 2025-06-05 20:51:10,525 | INFO     | task id: 44871837
[2025-06-05 16:51:24] 2025-06-05 20:51:10,526 | INFO     | errors: (none)
[2025-06-05 16:51:24] 2025-06-05 20:51:10,526 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 16:51:24] 2025-06-05 20:51:10,526 | INFO     | pilot state: finished 
[2025-06-05 16:51:24] 2025-06-05 20:51:10,526 | INFO     | transexitcode: 0
[2025-06-05 16:51:24] 2025-06-05 20:51:10,526 | INFO     | exeerrorcode: 0
[2025-06-05 16:51:24] 2025-06-05 20:51:10,526 | INFO     | exeerrordiag: 
[2025-06-05 16:51:24] 2025-06-05 20:51:10,526 | INFO     | exitcode: 0
[2025-06-05 16:51:24] 2025-06-05 20:51:10,526 | INFO     | exitmsg: OK
[2025-06-05 16:51:24] 2025-06-05 20:51:10,526 | INFO     | cpuconsumptiontime: 54148 s
[2025-06-05 16:51:24] 2025-06-05 20:51:10,526 | INFO     | nevents: 400
[2025-06-05 16:51:24] 2025-06-05 20:51:10,526 | INFO     | neventsw: 0
[2025-06-05 16:51:24] 2025-06-05 20:51:10,526 | INFO     | pid: 2305427
[2025-06-05 16:51:24] 2025-06-05 20:51:10,526 | INFO     | pgrp: 2305427
[2025-06-05 16:51:24] 2025-06-05 20:51:10,526 | INFO     | corecount: 8
[2025-06-05 16:51:24] 2025-06-05 20:51:10,526 | INFO     | event service: False
[2025-06-05 16:51:24] 2025-06-05 20:51:10,527 | INFO     | sizes: {0: 2397392, 4: 2397598, 11: 2397626, 12674: 2427443, 12675: 2427442, 12678: 2436439, 12679: 2436623, 12690: 2436793}
[2025-06-05 16:51:24] 2025-06-05 20:51:10,527 | INFO     | --------------------------------------------------
[2025-06-05 16:51:24] 2025-06-05 20:51:10,527 | INFO     | 
[2025-06-05 16:51:24] 2025-06-05 20:51:10,527 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-05 16:51:24] 2025-06-05 20:51:10,599 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 16:51:24] 2025-06-05 20:51:10,599 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 16:51:24] 2025-06-05 20:51:10,599 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 16:51:24] 2025-06-05 20:51:10,599 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 16:51:24] 2025-06-05 20:51:10,599 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 16:51:24] 2025-06-05 20:51:10,599 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 16:51:24] 2025-06-05 20:51:10,600 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 16:51:24] 2025-06-05 20:51:10,600 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 16:51:24] 2025-06-05 20:51:10,600 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 16:51:24] 2025-06-05 20:51:10,600 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 16:51:24] 2025-06-05 20:51:10,600 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 16:51:24] 2025-06-05 20:51:10,600 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 16:51:24] 2025-06-05 20:51:10,600 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 16:51:24] 2025-06-05 20:51:10,600 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 16:51:24] 2025-06-05 20:51:10,600 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 16:51:24] 2025-06-05 20:51:10,600 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 16:51:24] 2025-06-05 20:51:10,600 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 16:51:24] 2025-06-05 20:51:10,600 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 16:51:24] 2025-06-05 20:51:10,600 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 16:51:24] 2025-06-05 20:51:10,600 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 16:51:24] 2025-06-05 20:51:10,601 | INFO     | job 6668990367 has completed (purged errors)
[2025-06-05 16:51:24] 2025-06-05 20:51:10,601 | INFO     | overall cleanup function is called
[2025-06-05 16:51:24] 2025-06-05 20:51:11,615 | INFO     | --- collectZombieJob: --- 10, [2305427]
[2025-06-05 16:51:24] 2025-06-05 20:51:11,615 | INFO     | zombie collector waiting for pid 2305427
[2025-06-05 16:51:24] 2025-06-05 20:51:11,615 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 16:51:24] 2025-06-05 20:51:11,615 | INFO     | collected zombie processes
[2025-06-05 16:51:24] 2025-06-05 20:51:11,615 | INFO     | will attempt to kill all subprocesses of pid=2305427
[2025-06-05 16:51:24] 2025-06-05 20:51:12,172 | INFO     | process IDs to be killed: [2305427] (in reverse order)
[2025-06-05 16:51:24] 2025-06-05 20:51:12,289 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 16:51:24] 2025-06-05 20:51:12,289 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 16:51:24] 2025-06-05 20:51:12,304 | INFO     | did not find any defunct processes belonging to 2305427
[2025-06-05 16:51:24] 2025-06-05 20:51:12,324 | INFO     | did not find any defunct processes belonging to 2305427
[2025-06-05 16:51:24] 2025-06-05 20:51:12,324 | INFO     | ready for new job
[2025-06-05 16:51:24] 2025-06-05 20:51:12,324 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 16:51:24] 2025-06-05 20:51:12,326 | INFO     | **************************************
[2025-06-05 16:51:24] 2025-06-05 20:51:12,326 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 16:51:24] 2025-06-05 20:51:12,326 | INFO     | **************************************
[2025-06-05 16:51:24] 2025-06-05 20:51:12,326 | INFO     | 
[2025-06-05 16:51:24] 2025-06-05 20:51:12,348 | INFO     | architecture information:
[2025-06-05 16:51:24] 2025-06-05 20:51:12,352 | INFO     | executing command: cat /etc/os-release
[2025-06-05 16:51:24] 2025-06-05 20:51:12,396 | INFO     | cat /etc/os-release:
[2025-06-05 16:51:24] NAME="CentOS Linux"
[2025-06-05 16:51:24] VERSION="7 (Core)"
[2025-06-05 16:51:24] ID="centos"
[2025-06-05 16:51:24] ID_LIKE="rhel fedora"
[2025-06-05 16:51:24] VERSION_ID="7"
[2025-06-05 16:51:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 16:51:24] ANSI_COLOR="0;31"
[2025-06-05 16:51:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 16:51:24] HOME_URL="https://www.centos.org/"
[2025-06-05 16:51:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 16:51:24] 
[2025-06-05 16:51:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 16:51:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 16:51:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 16:51:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 16:51:24] 
[2025-06-05 16:51:24] 2025-06-05 20:51:12,396 | INFO     | **************************************
[2025-06-05 16:51:24] 2025-06-05 20:51:12,900 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-05 16:51:24] 2025-06-05 20:51:12,927 | INFO     | sufficient remaining disk space (76117180416 B)
[2025-06-05 16:51:24] 2025-06-05 20:51:12,927 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 16:51:24] 2025-06-05 20:51:12,927 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 16:51:24] 2025-06-05 20:51:12,928 | INFO     | update_server=False
[2025-06-05 16:51:24] 2025-06-05 20:51:12,928 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 16:51:24] 2025-06-05 20:51:13,047 | INFO     | all data control threads have been joined
[2025-06-05 16:51:24] 2025-06-05 20:51:13,195 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 16:51:24] 2025-06-05 20:51:13,195 | INFO     | aborting loop
[2025-06-05 16:51:24] 2025-06-05 20:51:13,489 | INFO     | all payload control threads have been joined
[2025-06-05 16:51:24] 2025-06-05 20:51:13,489 | INFO     | all job control threads have been joined
[2025-06-05 16:51:24] 2025-06-05 20:51:13,836 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 16:51:24] 2025-06-05 20:51:13,836 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 16:51:24] 2025-06-05 20:51:13,836 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 16:51:24] 2025-06-05 20:51:13,934 | INFO     | [job] retrieve thread has finished
[2025-06-05 16:51:24] 2025-06-05 20:51:13,947 | INFO     | [data] copytool_in thread has finished
[2025-06-05 16:51:24] 2025-06-05 20:51:14,053 | INFO     | [data] control thread has finished
[2025-06-05 16:51:24] 2025-06-05 20:51:14,201 | INFO     | [job] job monitor thread has finished
[2025-06-05 16:51:24] 2025-06-05 20:51:14,216 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 16:51:24] 2025-06-05 20:51:14,252 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 16:51:24] 2025-06-05 20:51:14,442 | INFO     | [payload] validate_post thread has finished
[2025-06-05 16:51:24] 2025-06-05 20:51:14,452 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 16:51:24] 2025-06-05 20:51:14,495 | INFO     | [payload] control thread has finished
[2025-06-05 16:51:24] 2025-06-05 20:51:14,496 | INFO     | [job] control thread has finished
[2025-06-05 16:51:24] 2025-06-05 20:51:14,739 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 16:51:24] 2025-06-05 20:51:14,808 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 16:51:24] 2025-06-05 20:51:14,942 | INFO     | [payload] failed_post thread has finished
[2025-06-05 16:51:24] 2025-06-05 20:51:15,068 | INFO     | [job] validate thread has finished
[2025-06-05 16:51:24] 2025-06-05 20:51:15,173 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 16:51:24] 2025-06-05 20:51:15,542 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 16:51:24] 2025-06-05 20:51:16,259 | INFO     | [data] copytool_out thread has finished
[2025-06-05 16:51:24] 2025-06-05 20:51:16,548 | INFO     | [job] queue monitor thread has finished
[2025-06-05 16:51:24] 2025-06-05 20:51:18,816 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 16:51:24] 2025-06-05 20:51:18,838 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139766241359680)>', '<ExcThread(monitor, started 139765600999168)>']
[2025-06-05 16:51:24] 2025-06-05 20:51:18,864 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 16:51:24] 2025-06-05 20:51:18,865 | INFO     | [monitor] control thread has ended
[2025-06-05 16:51:24] 2025-06-05 20:51:23,868 | INFO     | all workflow threads have been joined
[2025-06-05 16:51:24] 2025-06-05 20:51:23,868 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 16:51:24] 2025-06-05 20:51:23,868 | INFO     | traces error code: 0
[2025-06-05 16:51:24] 2025-06-05 20:51:23,869 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 16:51:24] 2025-06-05 20:51:24,028 [wrapper] ==== pilot stdout END ====
[2025-06-05 16:51:24] 2025-06-05 20:51:24,031 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 16:51:24] 2025-06-05 20:51:24,034 [wrapper] pilotpid: 2282683
[2025-06-05 16:51:24] 2025-06-05 20:51:24,037 [wrapper] Pilot exit status: 0
[2025-06-05 16:51:24] 2025-06-05 20:51:24,063 [wrapper] pandaids: 6668990367
[2025-06-05 16:51:24] 2025-06-05 20:51:24,151 [wrapper] cleanup supervisor_pilot 2986235 2282684
[2025-06-05 16:51:24] 2025-06-05 20:51:24,158 [wrapper] Test setup, not cleaning
[2025-06-05 16:51:24] 2025-06-05 20:51:24,171 [wrapper] apfmon messages muted
[2025-06-05 16:51:24] 2025-06-05 20:51:24,176 [wrapper] ==== wrapper stdout END ====
[2025-06-05 16:51:24] 2025-06-05 20:51:24,186 [wrapper] ==== wrapper stderr END ====
[2025-06-05 16:51:24]  *** Error codes and diagnostics ***
[2025-06-05 16:51:24]     "exeErrorCode": 0,
[2025-06-05 16:51:24]     "exeErrorDiag": "",
[2025-06-05 16:51:24]     "pilotErrorCode": 0,
[2025-06-05 16:51:24]     "pilotErrorDiag": "",
[2025-06-05 16:51:24]  *** Listing of results directory ***
[2025-06-05 16:51:24] total 426844
[2025-06-05 16:51:24] -rw-r--r--. 1 boincer umatlas    495897 May 28 19:19 pilot3.tar.gz
[2025-06-05 16:51:24] -rwx------. 1 boincer umatlas     37140 May 28 19:33 runpilot2-wrapper.sh
[2025-06-05 16:51:24] -rw-r--r--. 1 boincer umatlas      5111 May 28 19:33 queuedata.json
[2025-06-05 16:51:24] -rw-r--r--. 1 boincer umatlas       100 Jun  5 13:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 16:51:24] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  5 13:19 run_atlas
[2025-06-05 16:51:24] -rw-r--r--. 1 boincer umatlas       105 Jun  5 13:19 job.xml
[2025-06-05 16:51:24] -rw-r--r--. 2 boincer umatlas 227751724 Jun  5 13:19 EVNT.44871834._003576.pool.root.1
[2025-06-05 16:51:24] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 13:19 start_atlas.sh
[2025-06-05 16:51:24] drwxrwx--x. 2 boincer umatlas      4096 Jun  5 13:19 shared
[2025-06-05 16:51:24] -rw-r--r--. 2 boincer umatlas    508876 Jun  5 13:19 input.tar.gz
[2025-06-05 16:51:24] -rw-r--r--. 1 boincer umatlas         0 Jun  5 13:19 boinc_lockfile
[2025-06-05 16:51:24] -rw-r--r--. 1 boincer umatlas      2559 Jun  5 13:19 pandaJob.out
[2025-06-05 16:51:24] -rw-------. 1 boincer umatlas    983229 Jun  5 13:19 agis_schedconf.cvmfs.json
[2025-06-05 16:51:24] drwx------. 4 boincer umatlas      4096 Jun  5 13:19 pilot3
[2025-06-05 16:51:24] -rw-r--r--. 1 boincer umatlas      6858 Jun  5 16:47 init_data.xml
[2025-06-05 16:51:24] -rw-------. 1 boincer umatlas 202575149 Jun  5 16:50 HITS.44871837._091960.pool.root.1
[2025-06-05 16:51:24] -rw-r--r--. 1 boincer umatlas       530 Jun  5 16:50 boinc_task_state.xml
[2025-06-05 16:51:24] -rw-------. 1 boincer umatlas      1043 Jun  5 16:50 memory_monitor_summary.json
[2025-06-05 16:51:24] -rw-------. 1 boincer umatlas   1598969 Jun  5 16:50 agis_ddmendpoints.agis.ALL.json
[2025-06-05 16:51:24] -rw-------. 1 boincer umatlas    388930 Jun  5 16:50 log.44871837._091960.job.log.tgz.1
[2025-06-05 16:51:24] -rw-r--r--. 1 boincer umatlas      8192 Jun  5 16:51 boinc_mmap_file
[2025-06-05 16:51:24] -rw-r--r--. 1 boincer umatlas        28 Jun  5 16:51 wrapper_checkpoint.txt
[2025-06-05 16:51:24] -rw-------. 1 boincer umatlas        95 Jun  5 16:51 pilot_heartbeat.json
[2025-06-05 16:51:24] -rw-------. 1 boincer umatlas      7729 Jun  5 16:51 heartbeat.json
[2025-06-05 16:51:24] -rw-------. 1 boincer umatlas      4353 Jun  5 16:51 pilotlog.txt
[2025-06-05 16:51:24] -rw-------. 1 boincer umatlas   1073492 Jun  5 16:51 log.44871837._091960.job.log.1
[2025-06-05 16:51:24] -rw-------. 1 boincer umatlas       357 Jun  5 16:51 output.list
[2025-06-05 16:51:24] -rw-r--r--. 1 boincer umatlas       620 Jun  5 16:51 runtime_log
[2025-06-05 16:51:24] -rw-------. 1 boincer umatlas   1484800 Jun  5 16:51 result.tar.gz
[2025-06-05 16:51:24] -rw-r--r--. 1 boincer umatlas      8665 Jun  5 16:51 runtime_log.err
[2025-06-05 16:51:24] -rw-------. 1 boincer umatlas       657 Jun  5 16:51 0JTLDmOSfe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlJdKDmqACYKm.diag
[2025-06-05 16:51:24] -rw-r--r--. 1 boincer umatlas     21147 Jun  5 16:51 stderr.txt
[2025-06-05 16:51:24] HITS file was successfully produced:
[2025-06-05 16:51:24] -rw-------. 1 boincer umatlas 202575149 Jun  5 16:50 shared/HITS.pool.root.1
[2025-06-05 16:51:24]  *** Contents of shared directory: ***
[2025-06-05 16:51:24] total 422220
[2025-06-05 16:51:24] -rw-r--r--. 2 boincer umatlas 227751724 Jun  5 13:19 ATLAS.root_0
[2025-06-05 16:51:24] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 13:19 start_atlas.sh
[2025-06-05 16:51:24] -rw-r--r--. 2 boincer umatlas    508876 Jun  5 13:19 input.tar.gz
[2025-06-05 16:51:24] -rw-------. 1 boincer umatlas 202575149 Jun  5 16:50 HITS.pool.root.1
[2025-06-05 16:51:24] -rw-------. 1 boincer umatlas   1484800 Jun  5 16:51 result.tar.gz
16:51:25 (2274094): run_atlas exited; CPU time 54657.369639
16:51:25 (2274094): called boinc_finish(0)

</stderr_txt>
]]>

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