Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:39:40 (3714775): wrapper (7.7.26015): starting
12:39:40 (3714775): wrapper: running run_atlas (--nthreads 12)
[2025-06-05 12:39:40] Arguments: --nthreads 12
[2025-06-05 12:39:40] Threads: 12
[2025-06-05 12:39:40] Checking for CVMFS
[2025-06-05 12:39:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 12:39:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 12:39:40] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 12:39:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 12:39:41] 2.12.6.0 32194 2507 158440 146826 3 163 28703804 32935936 11314 16776704 0 10644857 99.672 7685379 37543 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-05 12:39:41] CVMFS is ok
[2025-06-05 12:39:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 12:39:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 12:39:41] Further information can be found at the LHC@home message board.
[2025-06-05 12:39:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 12:39:41] Checking for apptainer binary...
[2025-06-05 12:39:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 12:39:41] Running /usr/bin/apptainer --version
[2025-06-05 12:39:41] apptainer version 1.4.1-1.el9
[2025-06-05 12:39:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 12:39:41] c6-1-24-4.aglt2.org
[2025-06-05 12:39:41] apptainer works
[2025-06-05 12:39:41] Set ATHENA_PROC_NUMBER=12
[2025-06-05 12:39:41] Set ATHENA_CORE_NUMBER=12
[2025-06-05 12:39:41] Starting ATLAS job with PandaID=6668993009
[2025-06-05 12:39:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 14:08:08]  *** The last 200 lines of the pilot log: ***
[2025-06-05 14:08:08]  is_tar=False
[2025-06-05 14:08:08]  lfn=log.44871837._092536.job.log.tgz.1
[2025-06-05 14:08:08]  mtime=0
[2025-06-05 14:08:08]  protocol_id=None
[2025-06-05 14:08:08]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-05 14:08:08]  replicas=None
[2025-06-05 14:08:08]  scope=mc23_13p6TeV
[2025-06-05 14:08:08]  status=None
[2025-06-05 14:08:08]  status_code=0
[2025-06-05 14:08:08]  storage_token=
[2025-06-05 14:08:08]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6668993009/log.44871837._092536.job.log.tgz.1
[2025-06-05 14:08:08]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fc/26/log.44871837._092536.job.log.tgz.1
[2025-06-05 14:08:08]  workdir=None
[2025-06-05 14:08:08] ]
[2025-06-05 14:08:08] 2025-06-05 18:07:40,155 | INFO     | transferring file log.44871837._092536.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6668993009/log.44871837._092536.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-05 14:08:08] 2025-06-05 18:07:40,155 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6668993009/log.44871837._092536.job.log.tgz.1 /tmp/boinchome/slots/0/log.44871837._092536.job
[2025-06-05 14:08:08] 2025-06-05 18:07:40,176 | INFO     | adding to output.list: log.44871837._092536.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fc/26/log.44871837._092536.job.log.tg
[2025-06-05 14:08:08] 2025-06-05 18:07:40,177 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-05 14:08:08] 2025-06-05 18:07:40,177 | INFO     | summary of transferred files:
[2025-06-05 14:08:08] 2025-06-05 18:07:40,177 | INFO     |  -- lfn=log.44871837._092536.job.log.tgz.1, status_code=0, status=transferred
[2025-06-05 14:08:08] 2025-06-05 18:07:40,177 | INFO     | stage-out finished correctly
[2025-06-05 14:08:08] 2025-06-05 18:07:41,125 | INFO     | monitor loop #381: job 0:6668993009 is in state 'finished'
[2025-06-05 14:08:08] 2025-06-05 18:07:41,125 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 14:08:08] 2025-06-05 18:07:43,292 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-05 14:08:08] 2025-06-05 18:07:43,379 | INFO     | job 6668993009 has state=finished
[2025-06-05 14:08:08] 2025-06-05 18:07:43,379 | INFO     | preparing for final server update for job 6668993009 in state='finished'
[2025-06-05 14:08:08] 2025-06-05 18:07:43,380 | INFO     | this job has now completed (state=finished)
[2025-06-05 14:08:08] 2025-06-05 18:07:43,380 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-05 14:08:08] 2025-06-05 18:07:43,380 | INFO     | log transfer has been attempted: DONE
[2025-06-05 14:08:08] 2025-06-05 18:07:43,380 | INFO     | job 6668993009 has finished - writing final server update
[2025-06-05 14:08:08] 2025-06-05 18:07:43,381 | INFO     | total number of processed events: 400 (read)
[2025-06-05 14:08:08] 2025-06-05 18:07:43,397 | INFO     | executing command: lscpu
[2025-06-05 14:08:08] 2025-06-05 18:07:43,462 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 14:08:08] 2025-06-05 18:07:43,628 | INFO     | monitor loop #382: job 0:6668993009 is in state 'finished'
[2025-06-05 14:08:08] 2025-06-05 18:07:43,629 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 14:08:08] 2025-06-05 18:07:46,131 | INFO     | monitor loop #383: job 0:6668993009 is in state 'finished'
[2025-06-05 14:08:08] 2025-06-05 18:07:46,131 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 14:08:08] 2025-06-05 18:07:47,220 | INFO     | PID=3718401 has CPU usage=9.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-05 14:08:08] 2025-06-05 18:07:47,220 | INFO     | .. there are 13 such processes running
[2025-06-05 14:08:08] 2025-06-05 18:07:47,704 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-05 14:08:08] 2025-06-05 18:07:47,704 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6668993009/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 14:08:08] 2025-06-05 18:07:47,705 | INFO     | extracted standard info from prmon json
[2025-06-05 14:08:08] 2025-06-05 18:07:47,705 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 14:08:08] 2025-06-05 18:07:47,705 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 14:08:08] 2025-06-05 18:07:47,705 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 14:08:08] 2025-06-05 18:07:47,705 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 14:08:08] 2025-06-05 18:07:47,707 | INFO     | fitting pss+swap vs Time
[2025-06-05 14:08:08] 2025-06-05 18:07:47,708 | INFO     | sum of square deviations: 152862463.94936734
[2025-06-05 14:08:08] 2025-06-05 18:07:47,708 | INFO     | sum of deviations: -18856047462.367085
[2025-06-05 14:08:08] 2025-06-05 18:07:47,708 | INFO     | mean x: 1749144303.0253165
[2025-06-05 14:08:08] 2025-06-05 18:07:47,708 | INFO     | mean y: 2547840.6835443038
[2025-06-05 14:08:08] 2025-06-05 18:07:47,708 | INFO     | -- intersect: 215764790213.66385
[2025-06-05 14:08:08] 2025-06-05 18:07:47,708 | INFO     | intersect: 215764790213.66385
[2025-06-05 14:08:08] 2025-06-05 18:07:47,709 | INFO     | chi2: 0.143726361010617
[2025-06-05 14:08:08] 2025-06-05 18:07:47,709 | INFO     | -- intersect: 215764790213.66385
[2025-06-05 14:08:08] 2025-06-05 18:07:47,709 | INFO     | current memory leak: -123.35 B/s (using 79 data points, chi2=0.14)
[2025-06-05 14:08:08] 2025-06-05 18:07:47,709 | INFO     | ..............................
[2025-06-05 14:08:08] 2025-06-05 18:07:47,709 | INFO     | . Timing measurements:
[2025-06-05 14:08:08] 2025-06-05 18:07:47,709 | INFO     | . get job = 0 s
[2025-06-05 14:08:08] 2025-06-05 18:07:47,710 | INFO     | . initial setup = 3 s
[2025-06-05 14:08:08] 2025-06-05 18:07:47,710 | INFO     | . payload setup = 6 s
[2025-06-05 14:08:08] 2025-06-05 18:07:47,710 | INFO     | . stage-in = 0 s
[2025-06-05 14:08:08] 2025-06-05 18:07:47,710 | INFO     | . payload execution = 5240 s
[2025-06-05 14:08:08] 2025-06-05 18:07:47,710 | INFO     | . stage-out = 0 s
[2025-06-05 14:08:08] 2025-06-05 18:07:47,710 | INFO     | . log creation = 0 s
[2025-06-05 14:08:08] 2025-06-05 18:07:47,710 | INFO     | ..............................
[2025-06-05 14:08:08] 2025-06-05 18:07:48,042 | INFO     | 
[2025-06-05 14:08:08] 2025-06-05 18:07:48,042 | INFO     | job summary report
[2025-06-05 14:08:08] 2025-06-05 18:07:48,043 | INFO     | --------------------------------------------------
[2025-06-05 14:08:08] 2025-06-05 18:07:48,043 | INFO     | PanDA job id: 6668993009
[2025-06-05 14:08:08] 2025-06-05 18:07:48,043 | INFO     | task id: 44871837
[2025-06-05 14:08:08] 2025-06-05 18:07:48,043 | INFO     | errors: (none)
[2025-06-05 14:08:08] 2025-06-05 18:07:48,043 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 14:08:08] 2025-06-05 18:07:48,043 | INFO     | pilot state: finished 
[2025-06-05 14:08:08] 2025-06-05 18:07:48,043 | INFO     | transexitcode: 0
[2025-06-05 14:08:08] 2025-06-05 18:07:48,043 | INFO     | exeerrorcode: 0
[2025-06-05 14:08:08] 2025-06-05 18:07:48,043 | INFO     | exeerrordiag: 
[2025-06-05 14:08:08] 2025-06-05 18:07:48,043 | INFO     | exitcode: 0
[2025-06-05 14:08:08] 2025-06-05 18:07:48,044 | INFO     | exitmsg: OK
[2025-06-05 14:08:08] 2025-06-05 18:07:48,044 | INFO     | cpuconsumptiontime: 50167 s
[2025-06-05 14:08:08] 2025-06-05 18:07:48,044 | INFO     | nevents: 400
[2025-06-05 14:08:08] 2025-06-05 18:07:48,044 | INFO     | neventsw: 0
[2025-06-05 14:08:08] 2025-06-05 18:07:48,044 | INFO     | pid: 3725391
[2025-06-05 14:08:08] 2025-06-05 18:07:48,044 | INFO     | pgrp: 3725391
[2025-06-05 14:08:08] 2025-06-05 18:07:48,044 | INFO     | corecount: 12
[2025-06-05 14:08:08] 2025-06-05 18:07:48,044 | INFO     | event service: False
[2025-06-05 14:08:08] 2025-06-05 18:07:48,045 | INFO     | sizes: {0: 2397221, 1: 2397420, 5: 2397626, 11: 2397682, 5251: 2424154, 5252: 2433095, 5255: 2433279, 5260: 2433449}
[2025-06-05 14:08:08] 2025-06-05 18:07:48,045 | INFO     | --------------------------------------------------
[2025-06-05 14:08:08] 2025-06-05 18:07:48,045 | INFO     | 
[2025-06-05 14:08:08] 2025-06-05 18:07:48,045 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 14:08:08] 2025-06-05 18:07:48,069 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 14:08:08] 2025-06-05 18:07:48,069 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 14:08:08] 2025-06-05 18:07:48,069 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 14:08:08] 2025-06-05 18:07:48,069 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 14:08:08] 2025-06-05 18:07:48,069 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 14:08:08] 2025-06-05 18:07:48,069 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 14:08:08] 2025-06-05 18:07:48,069 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 14:08:08] 2025-06-05 18:07:48,070 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 14:08:08] 2025-06-05 18:07:48,070 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 14:08:08] 2025-06-05 18:07:48,070 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 14:08:08] 2025-06-05 18:07:48,070 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 14:08:08] 2025-06-05 18:07:48,070 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 14:08:08] 2025-06-05 18:07:48,070 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 14:08:08] 2025-06-05 18:07:48,070 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 14:08:08] 2025-06-05 18:07:48,070 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 14:08:08] 2025-06-05 18:07:48,070 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 14:08:08] 2025-06-05 18:07:48,070 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 14:08:08] 2025-06-05 18:07:48,070 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 14:08:08] 2025-06-05 18:07:48,070 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 14:08:08] 2025-06-05 18:07:48,070 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 14:08:08] 2025-06-05 18:07:48,070 | INFO     | job 6668993009 has completed (purged errors)
[2025-06-05 14:08:08] 2025-06-05 18:07:48,071 | INFO     | overall cleanup function is called
[2025-06-05 14:08:08] 2025-06-05 18:07:49,079 | INFO     | --- collectZombieJob: --- 10, [3725391]
[2025-06-05 14:08:08] 2025-06-05 18:07:49,079 | INFO     | zombie collector waiting for pid 3725391
[2025-06-05 14:08:08] 2025-06-05 18:07:49,080 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 14:08:08] 2025-06-05 18:07:49,080 | INFO     | collected zombie processes
[2025-06-05 14:08:08] 2025-06-05 18:07:49,080 | INFO     | will attempt to kill all subprocesses of pid=3725391
[2025-06-05 14:08:08] 2025-06-05 18:07:49,346 | INFO     | process IDs to be killed: [3725391] (in reverse order)
[2025-06-05 14:08:08] 2025-06-05 18:07:49,432 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 14:08:08] 2025-06-05 18:07:49,433 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 14:08:08] 2025-06-05 18:07:49,444 | INFO     | did not find any defunct processes belonging to 3725391
[2025-06-05 14:08:08] 2025-06-05 18:07:49,455 | INFO     | did not find any defunct processes belonging to 3725391
[2025-06-05 14:08:08] 2025-06-05 18:07:49,456 | INFO     | ready for new job
[2025-06-05 14:08:08] 2025-06-05 18:07:49,456 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 14:08:08] 2025-06-05 18:07:49,458 | INFO     | **************************************
[2025-06-05 14:08:08] 2025-06-05 18:07:49,458 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 14:08:08] 2025-06-05 18:07:49,458 | INFO     | **************************************
[2025-06-05 14:08:08] 2025-06-05 18:07:49,458 | INFO     | 
[2025-06-05 14:08:08] 2025-06-05 18:07:49,473 | INFO     | architecture information:
[2025-06-05 14:08:08] 2025-06-05 18:07:49,474 | INFO     | executing command: cat /etc/os-release
[2025-06-05 14:08:08] 2025-06-05 18:07:49,490 | INFO     | cat /etc/os-release:
[2025-06-05 14:08:08] NAME="CentOS Linux"
[2025-06-05 14:08:08] VERSION="7 (Core)"
[2025-06-05 14:08:08] ID="centos"
[2025-06-05 14:08:08] ID_LIKE="rhel fedora"
[2025-06-05 14:08:08] VERSION_ID="7"
[2025-06-05 14:08:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 14:08:08] ANSI_COLOR="0;31"
[2025-06-05 14:08:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 14:08:08] HOME_URL="https://www.centos.org/"
[2025-06-05 14:08:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 14:08:08] 
[2025-06-05 14:08:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 14:08:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 14:08:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 14:08:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 14:08:08] 
[2025-06-05 14:08:08] 2025-06-05 18:07:49,490 | INFO     | **************************************
[2025-06-05 14:08:08] 2025-06-05 18:07:49,993 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 14:08:08] 2025-06-05 18:07:50,011 | INFO     | sufficient remaining disk space (76249300992 B)
[2025-06-05 14:08:08] 2025-06-05 18:07:50,011 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 14:08:08] 2025-06-05 18:07:50,011 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 14:08:08] 2025-06-05 18:07:50,012 | INFO     | update_server=False
[2025-06-05 14:08:08] 2025-06-05 18:07:50,012 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 14:08:08] 2025-06-05 18:07:50,012 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 14:08:08] 2025-06-05 18:07:50,012 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 14:08:08] 2025-06-05 18:07:50,013 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 14:08:08] 2025-06-05 18:07:50,013 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 14:08:08] 2025-06-05 18:07:50,013 | INFO     | aborting loop
[2025-06-05 14:08:08] 2025-06-05 18:07:50,014 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 14:08:08] 2025-06-05 18:07:50,014 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 14:08:08] 2025-06-05 18:07:50,095 | INFO     | all payload control threads have been joined
[2025-06-05 14:08:08] 2025-06-05 18:07:50,200 | INFO     | all data control threads have been joined
[2025-06-05 14:08:08] 2025-06-05 18:07:50,788 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 14:08:08] 2025-06-05 18:07:51,016 | INFO     | [job] retrieve thread has finished
[2025-06-05 14:08:08] 2025-06-05 18:07:51,019 | INFO     | [job] job monitor thread has finished
[2025-06-05 14:08:08] 2025-06-05 18:07:51,100 | INFO     | [payload] control thread has finished
[2025-06-05 14:08:08] 2025-06-05 18:07:51,206 | INFO     | [data] control thread has finished
[2025-06-05 14:08:08] 2025-06-05 18:07:51,340 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 14:08:08] 2025-06-05 18:07:51,346 | INFO     | [payload] validate_post thread has finished
[2025-06-05 14:08:08] 2025-06-05 18:07:51,395 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 14:08:08] 2025-06-05 18:07:51,692 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 14:08:08] 2025-06-05 18:07:51,708 | INFO     | all job control threads have been joined
[2025-06-05 14:08:08] 2025-06-05 18:07:51,753 | INFO     | [payload] failed_post thread has finished
[2025-06-05 14:08:08] 2025-06-05 18:07:51,889 | INFO     | [job] validate thread has finished
[2025-06-05 14:08:08] 2025-06-05 18:07:52,072 | INFO     | [data] copytool_in thread has finished
[2025-06-05 14:08:08] 2025-06-05 18:07:52,713 | INFO     | [job] control thread has finished
[2025-06-05 14:08:08] 2025-06-05 18:07:52,794 | INFO     | [data] copytool_out thread has finished
[2025-06-05 14:08:08] 2025-06-05 18:07:52,814 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 14:08:08] 2025-06-05 18:07:53,819 | INFO     | [job] queue monitor thread has finished
[2025-06-05 14:08:08] 2025-06-05 18:07:54,019 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 14:08:08] 2025-06-05 18:08:00,432 | INFO     | job.realtimelogging is not enabled
[2025-06-05 14:08:08] 2025-06-05 18:08:01,438 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 14:08:08] 2025-06-05 18:08:02,746 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140126150162240)>', '<ExcThread(monitor, started 140125388404480)>']
[2025-06-05 14:08:08] 2025-06-05 18:08:03,082 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 14:08:08] 2025-06-05 18:08:03,082 | INFO     | [monitor] control thread has ended
[2025-06-05 14:08:08] 2025-06-05 18:08:07,772 | INFO     | all workflow threads have been joined
[2025-06-05 14:08:08] 2025-06-05 18:08:07,772 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 14:08:08] 2025-06-05 18:08:07,773 | INFO     | traces error code: 0
[2025-06-05 14:08:08] 2025-06-05 18:08:07,773 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 14:08:08] 2025-06-05 18:08:07,991 [wrapper] ==== pilot stdout END ====
[2025-06-05 14:08:08] 2025-06-05 18:08:07,994 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 14:08:08] 2025-06-05 18:08:07,998 [wrapper] pilotpid: 3718401
[2025-06-05 14:08:08] 2025-06-05 18:08:08,000 [wrapper] Pilot exit status: 0
[2025-06-05 14:08:08] 2025-06-05 18:08:08,009 [wrapper] pandaids: 6668993009
[2025-06-05 14:08:08] 2025-06-05 18:08:08,067 [wrapper] cleanup supervisor_pilot 3910772 3718402
[2025-06-05 14:08:08] 2025-06-05 18:08:08,070 [wrapper] Test setup, not cleaning
[2025-06-05 14:08:08] 2025-06-05 18:08:08,072 [wrapper] apfmon messages muted
[2025-06-05 14:08:08] 2025-06-05 18:08:08,075 [wrapper] ==== wrapper stdout END ====
[2025-06-05 14:08:08] 2025-06-05 18:08:08,077 [wrapper] ==== wrapper stderr END ====
[2025-06-05 14:08:08]  *** Error codes and diagnostics ***
[2025-06-05 14:08:08]     "exeErrorCode": 0,
[2025-06-05 14:08:08]     "exeErrorDiag": "",
[2025-06-05 14:08:08]     "pilotErrorCode": 0,
[2025-06-05 14:08:08]     "pilotErrorDiag": "",
[2025-06-05 14:08:08]  *** Listing of results directory ***
[2025-06-05 14:08:08] total 418212
[2025-06-05 14:08:08] -rw-r--r--. 1 boincer umatlas    495897 May 28 20:49 pilot3.tar.gz
[2025-06-05 14:08:08] -rw-r--r--. 1 boincer umatlas      5111 May 28 20:51 queuedata.json
[2025-06-05 14:08:08] -rwx------. 1 boincer umatlas     37140 May 28 20:53 runpilot2-wrapper.sh
[2025-06-05 14:08:08] -rw-r--r--. 1 boincer umatlas       100 Jun  5 12:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 14:08:08] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  5 12:39 run_atlas
[2025-06-05 14:08:08] -rw-r--r--. 1 boincer umatlas       105 Jun  5 12:39 job.xml
[2025-06-05 14:08:08] -rw-r--r--. 2 boincer umatlas 225880636 Jun  5 12:39 EVNT.44871834._003599.pool.root.1
[2025-06-05 14:08:08] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 12:39 start_atlas.sh
[2025-06-05 14:08:08] drwxrwx--x. 2 boincer umatlas      4096 Jun  5 12:39 shared
[2025-06-05 14:08:08] -rw-r--r--. 2 boincer umatlas    508883 Jun  5 12:39 input.tar.gz
[2025-06-05 14:08:08] -rw-r--r--. 1 boincer umatlas         0 Jun  5 12:39 boinc_lockfile
[2025-06-05 14:08:08] -rw-r--r--. 1 boincer umatlas      2559 Jun  5 12:39 pandaJob.out
[2025-06-05 14:08:08] -rw-------. 1 boincer umatlas    983229 Jun  5 12:39 agis_schedconf.cvmfs.json
[2025-06-05 14:08:08] -rw-------. 1 boincer umatlas   1598969 Jun  5 12:39 agis_ddmendpoints.agis.ALL.json
[2025-06-05 14:08:08] drwx------. 4 boincer umatlas      4096 Jun  5 12:39 pilot3
[2025-06-05 14:08:08] -rw-r--r--. 1 boincer umatlas      6839 Jun  5 14:02 init_data.xml
[2025-06-05 14:08:08] -rw-------. 1 boincer umatlas 196750629 Jun  5 14:07 HITS.44871837._092536.pool.root.1
[2025-06-05 14:08:08] -rw-r--r--. 1 boincer umatlas       529 Jun  5 14:07 boinc_task_state.xml
[2025-06-05 14:08:08] -rw-------. 1 boincer umatlas        95 Jun  5 14:07 pilot_heartbeat.json
[2025-06-05 14:08:08] -rw-------. 1 boincer umatlas      1037 Jun  5 14:07 memory_monitor_summary.json
[2025-06-05 14:08:08] -rw-------. 1 boincer umatlas    382435 Jun  5 14:07 log.44871837._092536.job.log.tgz.1
[2025-06-05 14:08:08] -rw-------. 1 boincer umatlas      7724 Jun  5 14:07 heartbeat.json
[2025-06-05 14:08:08] -rw-r--r--. 1 boincer umatlas      8192 Jun  5 14:08 boinc_mmap_file
[2025-06-05 14:08:08] -rw-r--r--. 1 boincer umatlas        27 Jun  5 14:08 wrapper_checkpoint.txt
[2025-06-05 14:08:08] -rw-------. 1 boincer umatlas      4548 Jun  5 14:08 pilotlog.txt
[2025-06-05 14:08:08] -rw-------. 1 boincer umatlas    510371 Jun  5 14:08 log.44871837._092536.job.log.1
[2025-06-05 14:08:08] -rw-------. 1 boincer umatlas       357 Jun  5 14:08 output.list
[2025-06-05 14:08:08] -rw-r--r--. 1 boincer umatlas       620 Jun  5 14:08 runtime_log
[2025-06-05 14:08:08] -rw-------. 1 boincer umatlas    911360 Jun  5 14:08 result.tar.gz
[2025-06-05 14:08:08] -rw-r--r--. 1 boincer umatlas      8666 Jun  5 14:08 runtime_log.err
[2025-06-05 14:08:08] -rw-------. 1 boincer umatlas       654 Jun  5 14:08 oNvKDmPhge7n9Rq4apOajLDm4fhM0noT9bVof3QYDmUMUKDmAHFvRm.diag
[2025-06-05 14:08:08] -rw-r--r--. 1 boincer umatlas     21601 Jun  5 14:08 stderr.txt
[2025-06-05 14:08:08] HITS file was successfully produced:
[2025-06-05 14:08:08] -rw-------. 1 boincer umatlas 196750629 Jun  5 14:07 shared/HITS.pool.root.1
[2025-06-05 14:08:08]  *** Contents of shared directory: ***
[2025-06-05 14:08:08] total 414144
[2025-06-05 14:08:08] -rw-r--r--. 2 boincer umatlas 225880636 Jun  5 12:39 ATLAS.root_0
[2025-06-05 14:08:08] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 12:39 start_atlas.sh
[2025-06-05 14:08:08] -rw-r--r--. 2 boincer umatlas    508883 Jun  5 12:39 input.tar.gz
[2025-06-05 14:08:08] -rw-------. 1 boincer umatlas 196750629 Jun  5 14:07 HITS.pool.root.1
[2025-06-05 14:08:08] -rw-------. 1 boincer umatlas    911360 Jun  5 14:08 result.tar.gz
14:08:09 (3714775): run_atlas exited; CPU time 50250.677739
14:08:09 (3714775): called boinc_finish(0)

</stderr_txt>
]]>

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