Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:56:56 (1202974): wrapper (7.7.26015): starting
11:56:56 (1202974): wrapper: running run_atlas (--nthreads 10)
[2025-06-05 11:56:56] Arguments: --nthreads 10
[2025-06-05 11:56:56] Threads: 10
[2025-06-05 11:56:56] Checking for CVMFS
[2025-06-05 11:56:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 11:56:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 11:56:57] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 11:56:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 11:56:57] 2.12.6.0 709574 222407 339768 146825 1 556 22722104 32935936 19583 130560 1 377643431 99.642 364494803 26897 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-05 11:56:57] CVMFS is ok
[2025-06-05 11:56:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 11:56:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 11:56:57] Further information can be found at the LHC@home message board.
[2025-06-05 11:56:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 11:56:57] Checking for apptainer binary...
[2025-06-05 11:56:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 11:56:57] Running /usr/bin/apptainer --version
[2025-06-05 11:56:57] apptainer version 1.4.1-1.el9
[2025-06-05 11:56:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 11:56:57] c-5-6.aglt2.org
[2025-06-05 11:56:57] apptainer works
[2025-06-05 11:56:57] Set ATHENA_PROC_NUMBER=10
[2025-06-05 11:56:57] Set ATHENA_CORE_NUMBER=10
[2025-06-05 11:56:57] Starting ATLAS job with PandaID=6668326079
[2025-06-05 11:56:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 14:22:38]  *** The last 200 lines of the pilot log: ***
[2025-06-05 14:22:38] 2025-06-05 18:22:22,036 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6668326079/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 14:22:38] 2025-06-05 18:22:22,037 | INFO     | extracted standard info from prmon json
[2025-06-05 14:22:38] 2025-06-05 18:22:22,037 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 14:22:38] 2025-06-05 18:22:22,037 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 14:22:38] 2025-06-05 18:22:22,038 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 14:22:38] 2025-06-05 18:22:22,038 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 14:22:38] 2025-06-05 18:22:22,042 | INFO     | fitting pss+swap vs Time
[2025-06-05 14:22:38] 2025-06-05 18:22:22,042 | INFO     | sum of square deviations: 906733414.6293671
[2025-06-05 14:22:38] 2025-06-05 18:22:22,043 | INFO     | sum of deviations: 3115163306.6293736
[2025-06-05 14:22:38] 2025-06-05 18:22:22,044 | INFO     | mean x: 1749143388.097902
[2025-06-05 14:22:38] 2025-06-05 18:22:22,044 | INFO     | mean y: 2242037.0979020977
[2025-06-05 14:22:38] 2025-06-05 18:22:22,044 | INFO     | -- intersect: -6007095672.005081
[2025-06-05 14:22:38] 2025-06-05 18:22:22,044 | INFO     | intersect: -6007095672.005081
[2025-06-05 14:22:38] 2025-06-05 18:22:22,044 | INFO     | chi2: 2.537300055284291
[2025-06-05 14:22:38] 2025-06-05 18:22:22,045 | INFO     | sum of square deviations: 814912707.0797083
[2025-06-05 14:22:38] 2025-06-05 18:22:22,046 | INFO     | sum of deviations: 12982606370.57247
[2025-06-05 14:22:38] 2025-06-05 18:22:22,046 | INFO     | mean x: 1749143235.6014493
[2025-06-05 14:22:38] 2025-06-05 18:22:22,046 | INFO     | mean y: 2258005.137681159
[2025-06-05 14:22:38] 2025-06-05 18:22:22,046 | INFO     | -- intersect: -27863840923.347866
[2025-06-05 14:22:38] 2025-06-05 18:22:22,046 | INFO     | intersect: -27863840923.347866
[2025-06-05 14:22:38] 2025-06-05 18:22:22,046 | INFO     | chi2: 1.816528235518219
[2025-06-05 14:22:38] 2025-06-05 18:22:22,047 | INFO     | current chi2=1.816528235518219 (change=28.407039138511088 %)
[2025-06-05 14:22:38] 2025-06-05 18:22:22,047 | INFO     | sum of square deviations: 729493764.917293
[2025-06-05 14:22:38] 2025-06-05 18:22:22,048 | INFO     | sum of deviations: 12769602413.135326
[2025-06-05 14:22:38] 2025-06-05 18:22:22,048 | INFO     | mean x: 1749143083.0902255
[2025-06-05 14:22:38] 2025-06-05 18:22:22,048 | INFO     | mean y: 2257631.4887218047
[2025-06-05 14:22:38] 2025-06-05 18:22:22,048 | INFO     | -- intersect: -30616046196.344894
[2025-06-05 14:22:38] 2025-06-05 18:22:22,048 | INFO     | intersect: -30616046196.344894
[2025-06-05 14:22:38] 2025-06-05 18:22:22,049 | INFO     | chi2: 1.8181126657190345
[2025-06-05 14:22:38] 2025-06-05 18:22:22,049 | INFO     | current chi2=1.8181126657190345 (change=-0.08722298777609913 %)
[2025-06-05 14:22:38] 2025-06-05 18:22:22,049 | INFO     | right removable region: 132
[2025-06-05 14:22:38] 2025-06-05 18:22:22,049 | INFO     | sum of square deviations: 814904167.0797083
[2025-06-05 14:22:38] 2025-06-05 18:22:22,050 | INFO     | sum of deviations: -18989819527.036236
[2025-06-05 14:22:38] 2025-06-05 18:22:22,050 | INFO     | mean x: 1749143540.6014493
[2025-06-05 14:22:38] 2025-06-05 18:22:22,050 | INFO     | mean y: 2278320.1811594204
[2025-06-05 14:22:38] 2025-06-05 18:22:22,051 | INFO     | -- intersect: 40762801464.8048
[2025-06-05 14:22:38] 2025-06-05 18:22:22,051 | INFO     | intersect: 40762801464.8048
[2025-06-05 14:22:38] 2025-06-05 18:22:22,051 | INFO     | chi2: 0.9752176456361343
[2025-06-05 14:22:38] 2025-06-05 18:22:22,051 | INFO     | current chi2=0.9752176456361343 (change=61.5647489698704 %)
[2025-06-05 14:22:38] 2025-06-05 18:22:22,052 | INFO     | sum of square deviations: 729493644.5263141
[2025-06-05 14:22:38] 2025-06-05 18:22:22,052 | INFO     | sum of deviations: -16445897000.315788
[2025-06-05 14:22:38] 2025-06-05 18:22:22,052 | INFO     | mean x: 1749143693.1052632
[2025-06-05 14:22:38] 2025-06-05 18:22:22,053 | INFO     | mean y: 2273616.736842105
[2025-06-05 14:22:38] 2025-06-05 18:22:22,053 | INFO     | -- intersect: 39435430069.03199
[2025-06-05 14:22:38] 2025-06-05 18:22:22,053 | INFO     | intersect: 39435430069.03199
[2025-06-05 14:22:38] 2025-06-05 18:22:22,053 | INFO     | chi2: 0.9296027900159848
[2025-06-05 14:22:38] 2025-06-05 18:22:22,053 | INFO     | current chi2=0.9296027900159848 (change=4.677402611023818 %)
[2025-06-05 14:22:38] 2025-06-05 18:22:22,054 | INFO     | left removable region: 20
[2025-06-05 14:22:38] 2025-06-05 18:22:22,054 | INFO     | sum of square deviations: 435624494.91964203
[2025-06-05 14:22:38] 2025-06-05 18:22:22,054 | INFO     | sum of deviations: 2605691388.5178566
[2025-06-05 14:22:38] 2025-06-05 18:22:22,055 | INFO     | mean x: 1749143662.5982144
[2025-06-05 14:22:38] 2025-06-05 18:22:22,055 | INFO     | mean y: 2273400.589285714
[2025-06-05 14:22:38] 2025-06-05 18:22:22,055 | INFO     | -- intersect: -10460243358.835588
[2025-06-05 14:22:38] 2025-06-05 18:22:22,055 | INFO     | intersect: -10460243358.835588
[2025-06-05 14:22:38] 2025-06-05 18:22:22,055 | INFO     | chi2: 0.01633409684903612
[2025-06-05 14:22:38] 2025-06-05 18:22:22,056 | INFO     | -- intersect: -10460243358.835588
[2025-06-05 14:22:38] 2025-06-05 18:22:22,056 | INFO     | current memory leak: 5.98 B/s (using 112 data points, chi2=0.02)
[2025-06-05 14:22:38] 2025-06-05 18:22:22,056 | INFO     | ..............................
[2025-06-05 14:22:38] 2025-06-05 18:22:22,057 | INFO     | . Timing measurements:
[2025-06-05 14:22:38] 2025-06-05 18:22:22,057 | INFO     | . get job = 0 s
[2025-06-05 14:22:38] 2025-06-05 18:22:22,057 | INFO     | . initial setup = 3 s
[2025-06-05 14:22:38] 2025-06-05 18:22:22,057 | INFO     | . payload setup = 7 s
[2025-06-05 14:22:38] 2025-06-05 18:22:22,057 | INFO     | . stage-in = 0 s
[2025-06-05 14:22:38] 2025-06-05 18:22:22,057 | INFO     | . payload execution = 8676 s
[2025-06-05 14:22:38] 2025-06-05 18:22:22,057 | INFO     | . stage-out = 0 s
[2025-06-05 14:22:38] 2025-06-05 18:22:22,057 | INFO     | . log creation = 0 s
[2025-06-05 14:22:38] 2025-06-05 18:22:22,058 | INFO     | ..............................
[2025-06-05 14:22:38] 2025-06-05 18:22:22,171 | INFO     | 
[2025-06-05 14:22:38] 2025-06-05 18:22:22,171 | INFO     | job summary report
[2025-06-05 14:22:38] 2025-06-05 18:22:22,171 | INFO     | --------------------------------------------------
[2025-06-05 14:22:38] 2025-06-05 18:22:22,171 | INFO     | PanDA job id: 6668326079
[2025-06-05 14:22:38] 2025-06-05 18:22:22,171 | INFO     | task id: 44871837
[2025-06-05 14:22:38] 2025-06-05 18:22:22,171 | INFO     | errors: (none)
[2025-06-05 14:22:38] 2025-06-05 18:22:22,171 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 14:22:38] 2025-06-05 18:22:22,172 | INFO     | pilot state: finished 
[2025-06-05 14:22:38] 2025-06-05 18:22:22,172 | INFO     | transexitcode: 0
[2025-06-05 14:22:38] 2025-06-05 18:22:22,172 | INFO     | exeerrorcode: 0
[2025-06-05 14:22:38] 2025-06-05 18:22:22,172 | INFO     | exeerrordiag: 
[2025-06-05 14:22:38] 2025-06-05 18:22:22,172 | INFO     | exitcode: 0
[2025-06-05 14:22:38] 2025-06-05 18:22:22,172 | INFO     | exitmsg: OK
[2025-06-05 14:22:38] 2025-06-05 18:22:22,172 | INFO     | cpuconsumptiontime: 61084 s
[2025-06-05 14:22:38] 2025-06-05 18:22:22,172 | INFO     | nevents: 400
[2025-06-05 14:22:38] 2025-06-05 18:22:22,173 | INFO     | neventsw: 0
[2025-06-05 14:22:38] 2025-06-05 18:22:22,173 | INFO     | pid: 1213445
[2025-06-05 14:22:38] 2025-06-05 18:22:22,173 | INFO     | pgrp: 1213445
[2025-06-05 14:22:38] 2025-06-05 18:22:22,173 | INFO     | corecount: 10
[2025-06-05 14:22:38] 2025-06-05 18:22:22,173 | INFO     | event service: False
[2025-06-05 14:22:38] 2025-06-05 18:22:22,173 | INFO     | sizes: {0: 2397391, 5: 2397597, 11: 2397653, 8688: 2425655, 8689: 2434596, 8692: 2434652, 8697: 2434950}
[2025-06-05 14:22:38] 2025-06-05 18:22:22,173 | INFO     | --------------------------------------------------
[2025-06-05 14:22:38] 2025-06-05 18:22:22,173 | INFO     | 
[2025-06-05 14:22:38] 2025-06-05 18:22:22,174 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 14:22:38] 2025-06-05 18:22:22,194 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 14:22:38] 2025-06-05 18:22:22,195 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 14:22:38] 2025-06-05 18:22:22,195 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 14:22:38] 2025-06-05 18:22:22,195 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 14:22:38] 2025-06-05 18:22:22,195 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 14:22:38] 2025-06-05 18:22:22,195 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 14:22:38] 2025-06-05 18:22:22,195 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 14:22:38] 2025-06-05 18:22:22,196 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 14:22:38] 2025-06-05 18:22:22,196 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 14:22:38] 2025-06-05 18:22:22,196 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 14:22:38] 2025-06-05 18:22:22,196 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 14:22:38] 2025-06-05 18:22:22,196 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 14:22:38] 2025-06-05 18:22:22,196 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 14:22:38] 2025-06-05 18:22:22,196 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 14:22:38] 2025-06-05 18:22:22,196 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 14:22:38] 2025-06-05 18:22:22,196 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 14:22:38] 2025-06-05 18:22:22,196 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 14:22:38] 2025-06-05 18:22:22,197 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 14:22:38] 2025-06-05 18:22:22,197 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 14:22:38] 2025-06-05 18:22:22,197 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 14:22:38] 2025-06-05 18:22:22,197 | INFO     | job 6668326079 has completed (purged errors)
[2025-06-05 14:22:38] 2025-06-05 18:22:22,197 | INFO     | overall cleanup function is called
[2025-06-05 14:22:38] 2025-06-05 18:22:23,206 | INFO     | --- collectZombieJob: --- 10, [1213445]
[2025-06-05 14:22:38] 2025-06-05 18:22:23,206 | INFO     | zombie collector waiting for pid 1213445
[2025-06-05 14:22:38] 2025-06-05 18:22:23,206 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 14:22:38] 2025-06-05 18:22:23,206 | INFO     | collected zombie processes
[2025-06-05 14:22:38] 2025-06-05 18:22:23,206 | INFO     | will attempt to kill all subprocesses of pid=1213445
[2025-06-05 14:22:38] 2025-06-05 18:22:23,588 | INFO     | process IDs to be killed: [1213445] (in reverse order)
[2025-06-05 14:22:38] 2025-06-05 18:22:23,706 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 14:22:38] 2025-06-05 18:22:23,706 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 14:22:38] 2025-06-05 18:22:23,722 | INFO     | did not find any defunct processes belonging to 1213445
[2025-06-05 14:22:38] 2025-06-05 18:22:23,738 | INFO     | did not find any defunct processes belonging to 1213445
[2025-06-05 14:22:38] 2025-06-05 18:22:23,739 | INFO     | ready for new job
[2025-06-05 14:22:38] 2025-06-05 18:22:23,739 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 14:22:38] 2025-06-05 18:22:23,741 | INFO     | **************************************
[2025-06-05 14:22:38] 2025-06-05 18:22:23,741 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 14:22:38] 2025-06-05 18:22:23,741 | INFO     | **************************************
[2025-06-05 14:22:38] 2025-06-05 18:22:23,742 | INFO     | 
[2025-06-05 14:22:38] 2025-06-05 18:22:23,744 | INFO     | architecture information:
[2025-06-05 14:22:38] 2025-06-05 18:22:23,744 | INFO     | executing command: cat /etc/os-release
[2025-06-05 14:22:38] 2025-06-05 18:22:23,761 | INFO     | cat /etc/os-release:
[2025-06-05 14:22:38] NAME="CentOS Linux"
[2025-06-05 14:22:38] VERSION="7 (Core)"
[2025-06-05 14:22:38] ID="centos"
[2025-06-05 14:22:38] ID_LIKE="rhel fedora"
[2025-06-05 14:22:38] VERSION_ID="7"
[2025-06-05 14:22:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 14:22:38] ANSI_COLOR="0;31"
[2025-06-05 14:22:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 14:22:38] HOME_URL="https://www.centos.org/"
[2025-06-05 14:22:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 14:22:38] 
[2025-06-05 14:22:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 14:22:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 14:22:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 14:22:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 14:22:38] 
[2025-06-05 14:22:38] 2025-06-05 18:22:23,761 | INFO     | **************************************
[2025-06-05 14:22:38] 2025-06-05 18:22:24,264 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 14:22:38] 2025-06-05 18:22:24,280 | INFO     | sufficient remaining disk space (76479987712 B)
[2025-06-05 14:22:38] 2025-06-05 18:22:24,280 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 14:22:38] 2025-06-05 18:22:24,280 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 14:22:38] 2025-06-05 18:22:24,281 | INFO     | update_server=False
[2025-06-05 14:22:38] 2025-06-05 18:22:24,281 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 14:22:38] 2025-06-05 18:22:24,281 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 14:22:38] 2025-06-05 18:22:24,281 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 14:22:38] 2025-06-05 18:22:24,281 | INFO     | aborting loop
[2025-06-05 14:22:38] 2025-06-05 18:22:24,282 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 14:22:38] 2025-06-05 18:22:24,282 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 14:22:38] 2025-06-05 18:22:24,282 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 14:22:38] 2025-06-05 18:22:24,389 | INFO     | all job control threads have been joined
[2025-06-05 14:22:38] 2025-06-05 18:22:24,439 | INFO     | all data control threads have been joined
[2025-06-05 14:22:38] 2025-06-05 18:22:24,893 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 14:22:38] 2025-06-05 18:22:25,286 | INFO     | [job] retrieve thread has finished
[2025-06-05 14:22:38] 2025-06-05 18:22:25,287 | INFO     | [job] job monitor thread has finished
[2025-06-05 14:22:38] 2025-06-05 18:22:25,303 | INFO     | all payload control threads have been joined
[2025-06-05 14:22:38] 2025-06-05 18:22:25,315 | INFO     | [job] validate thread has finished
[2025-06-05 14:22:38] 2025-06-05 18:22:25,394 | INFO     | [job] control thread has finished
[2025-06-05 14:22:38] 2025-06-05 18:22:25,443 | INFO     | [data] control thread has finished
[2025-06-05 14:22:38] 2025-06-05 18:22:25,568 | INFO     | [payload] validate_post thread has finished
[2025-06-05 14:22:38] 2025-06-05 18:22:25,746 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 14:22:38] 2025-06-05 18:22:25,958 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 14:22:38] 2025-06-05 18:22:25,970 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 14:22:38] 2025-06-05 18:22:26,025 | INFO     | [payload] failed_post thread has finished
[2025-06-05 14:22:38] 2025-06-05 18:22:26,199 | INFO     | [data] copytool_in thread has finished
[2025-06-05 14:22:38] 2025-06-05 18:22:26,308 | INFO     | [payload] control thread has finished
[2025-06-05 14:22:38] 2025-06-05 18:22:26,338 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 14:22:38] 2025-06-05 18:22:26,898 | INFO     | [data] copytool_out thread has finished
[2025-06-05 14:22:38] 2025-06-05 18:22:27,184 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 14:22:38] 2025-06-05 18:22:27,545 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 14:22:38] 2025-06-05 18:22:28,189 | INFO     | [job] queue monitor thread has finished
[2025-06-05 14:22:38] 2025-06-05 18:22:31,553 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 14:22:38] 2025-06-05 18:22:32,861 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140535765022528)>', '<ExcThread(monitor, started 140535129949952)>']
[2025-06-05 14:22:38] 2025-06-05 18:22:33,324 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 14:22:38] 2025-06-05 18:22:33,324 | INFO     | [monitor] control thread has ended
[2025-06-05 14:22:38] 2025-06-05 18:22:37,886 | INFO     | all workflow threads have been joined
[2025-06-05 14:22:38] 2025-06-05 18:22:37,886 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 14:22:38] 2025-06-05 18:22:37,886 | INFO     | traces error code: 0
[2025-06-05 14:22:38] 2025-06-05 18:22:37,886 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 14:22:38] 2025-06-05 18:22:37,999 [wrapper] ==== pilot stdout END ====
[2025-06-05 14:22:38] 2025-06-05 18:22:38,002 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 14:22:38] 2025-06-05 18:22:38,004 [wrapper] pilotpid: 1206603
[2025-06-05 14:22:38] 2025-06-05 18:22:38,006 [wrapper] Pilot exit status: 0
[2025-06-05 14:22:38] 2025-06-05 18:22:38,014 [wrapper] pandaids: 6668326079
[2025-06-05 14:22:38] 2025-06-05 18:22:38,063 [wrapper] cleanup supervisor_pilot 1674964 1206604
[2025-06-05 14:22:38] 2025-06-05 18:22:38,066 [wrapper] Test setup, not cleaning
[2025-06-05 14:22:38] 2025-06-05 18:22:38,067 [wrapper] apfmon messages muted
[2025-06-05 14:22:38] 2025-06-05 18:22:38,069 [wrapper] ==== wrapper stdout END ====
[2025-06-05 14:22:38] 2025-06-05 18:22:38,071 [wrapper] ==== wrapper stderr END ====
[2025-06-05 14:22:38]  *** Error codes and diagnostics ***
[2025-06-05 14:22:38]     "exeErrorCode": 0,
[2025-06-05 14:22:38]     "exeErrorDiag": "",
[2025-06-05 14:22:38]     "pilotErrorCode": 0,
[2025-06-05 14:22:38]     "pilotErrorDiag": "",
[2025-06-05 14:22:38]  *** Listing of results directory ***
[2025-06-05 14:22:38] total 417816
[2025-06-05 14:22:38] -rw-r--r--. 1 boincer umatlas    495897 May 28 05:57 pilot3.tar.gz
[2025-06-05 14:22:38] -rwx------. 1 boincer umatlas     37140 May 28 06:01 runpilot2-wrapper.sh
[2025-06-05 14:22:38] -rw-r--r--. 1 boincer umatlas      5111 May 28 06:01 queuedata.json
[2025-06-05 14:22:38] -rw-r--r--. 1 boincer umatlas       100 Jun  5 11:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 14:22:38] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  5 11:56 run_atlas
[2025-06-05 14:22:38] -rw-r--r--. 1 boincer umatlas       105 Jun  5 11:56 job.xml
[2025-06-05 14:22:38] -rw-r--r--. 2 boincer umatlas 226743792 Jun  5 11:56 EVNT.44871834._003221.pool.root.1
[2025-06-05 14:22:38] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 11:56 start_atlas.sh
[2025-06-05 14:22:38] drwxrwx--x. 2 boincer umatlas      4096 Jun  5 11:56 shared
[2025-06-05 14:22:38] -rw-r--r--. 2 boincer umatlas    508873 Jun  5 11:56 input.tar.gz
[2025-06-05 14:22:38] -rw-r--r--. 1 boincer umatlas         0 Jun  5 11:56 boinc_lockfile
[2025-06-05 14:22:38] -rw-r--r--. 1 boincer umatlas      2558 Jun  5 11:56 pandaJob.out
[2025-06-05 14:22:38] -rw-------. 1 boincer umatlas    983229 Jun  5 11:57 agis_schedconf.cvmfs.json
[2025-06-05 14:22:38] -rw-------. 1 boincer umatlas   1598969 Jun  5 11:57 agis_ddmendpoints.agis.ALL.json
[2025-06-05 14:22:38] drwx------. 4 boincer umatlas      4096 Jun  5 11:57 pilot3
[2025-06-05 14:22:38] -rw-r--r--. 1 boincer umatlas      6671 Jun  5 14:18 init_data.xml
[2025-06-05 14:22:38] -rw-------. 1 boincer umatlas 194951006 Jun  5 14:21 HITS.44871837._082545.pool.root.1
[2025-06-05 14:22:38] -rw-r--r--. 1 boincer umatlas       529 Jun  5 14:21 boinc_task_state.xml
[2025-06-05 14:22:38] -rw-------. 1 boincer umatlas        95 Jun  5 14:21 pilot_heartbeat.json
[2025-06-05 14:22:38] -rw-------. 1 boincer umatlas      1043 Jun  5 14:22 memory_monitor_summary.json
[2025-06-05 14:22:38] -rw-------. 1 boincer umatlas    383040 Jun  5 14:22 log.44871837._082545.job.log.tgz.1
[2025-06-05 14:22:38] -rw-------. 1 boincer umatlas      7716 Jun  5 14:22 heartbeat.json
[2025-06-05 14:22:38] -rw-r--r--. 1 boincer umatlas      8192 Jun  5 14:22 boinc_mmap_file
[2025-06-05 14:22:38] -rw-r--r--. 1 boincer umatlas        27 Jun  5 14:22 wrapper_checkpoint.txt
[2025-06-05 14:22:38] -rw-------. 1 boincer umatlas      4476 Jun  5 14:22 pilotlog.txt
[2025-06-05 14:22:38] -rw-------. 1 boincer umatlas    776612 Jun  5 14:22 log.44871837._082545.job.log.1
[2025-06-05 14:22:38] -rw-------. 1 boincer umatlas       357 Jun  5 14:22 output.list
[2025-06-05 14:22:38] -rw-r--r--. 1 boincer umatlas       620 Jun  5 14:22 runtime_log
[2025-06-05 14:22:38] -rw-------. 1 boincer umatlas   1177600 Jun  5 14:22 result.tar.gz
[2025-06-05 14:22:38] -rw-r--r--. 1 boincer umatlas      8646 Jun  5 14:22 runtime_log.err
[2025-06-05 14:22:38] -rw-------. 1 boincer umatlas       650 Jun  5 14:22 6imMDmGmSe7n9Rq4apOajLDm4fhM0noT9bVof3QYDmcITKDmmZ0aJo.diag
[2025-06-05 14:22:38] -rw-r--r--. 1 boincer umatlas     20939 Jun  5 14:22 stderr.txt
[2025-06-05 14:22:38] HITS file was successfully produced:
[2025-06-05 14:22:38] -rw-------. 1 boincer umatlas 194951006 Jun  5 14:21 shared/HITS.pool.root.1
[2025-06-05 14:22:38]  *** Contents of shared directory: ***
[2025-06-05 14:22:38] total 413488
[2025-06-05 14:22:38] -rw-r--r--. 2 boincer umatlas 226743792 Jun  5 11:56 ATLAS.root_0
[2025-06-05 14:22:38] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 11:56 start_atlas.sh
[2025-06-05 14:22:38] -rw-r--r--. 2 boincer umatlas    508873 Jun  5 11:56 input.tar.gz
[2025-06-05 14:22:38] -rw-------. 1 boincer umatlas 194951006 Jun  5 14:21 HITS.pool.root.1
[2025-06-05 14:22:38] -rw-------. 1 boincer umatlas   1177600 Jun  5 14:22 result.tar.gz
14:22:39 (1202974): run_atlas exited; CPU time 61377.273941
14:22:39 (1202974): called boinc_finish(0)

</stderr_txt>
]]>

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