Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:51:25 (3661489): wrapper (7.7.26015): starting
08:51:25 (3661489): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 08:51:25] Arguments: --nthreads 8
[2025-06-05 08:51:25] Threads: 8
[2025-06-05 08:51:25] Checking for CVMFS
[2025-06-05 08:51:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 08:51:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 08:51:26] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 08:51:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 08:51:27] 2.11.3.0 153215 404233 187952 146825 1 18 42978044 45568000 12471 130560 0 1846736655 99.758 1508244654 20442 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2025-06-05 08:51:27] CVMFS is ok
[2025-06-05 08:51:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 08:51:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 08:51:27] Further information can be found at the LHC@home message board.
[2025-06-05 08:51:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 08:51:27] Checking for apptainer binary...
[2025-06-05 08:51:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 08:51:27] Running /usr/bin/apptainer --version
[2025-06-05 08:51:28] apptainer version 1.3.3-1.el9
[2025-06-05 08:51:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 08:51:30] WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0018.triumf.lcg
[2025-06-05 08:51:30] apptainer works
[2025-06-05 08:51:30] Set ATHENA_PROC_NUMBER=8
[2025-06-05 08:51:30] Set ATHENA_CORE_NUMBER=8
[2025-06-05 08:51:30] Starting ATLAS job with PandaID=6680898485
[2025-06-05 08:51:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 08:59:26]  *** The last 200 lines of the pilot log: ***
[2025-06-05 08:59:26] 2025-06-05 15:58:50,055 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 08:59:26] 2025-06-05 15:58:50,055 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 08:59:26] 2025-06-05 15:58:50,056 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 08:59:26] 2025-06-05 15:58:50,056 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 08:59:26] 2025-06-05 15:58:50,056 | WARNING  | wrong length of table data, x=[1749138895.0, 1749138956.0], y=[1949.0, 461188.0] (must be same and length>=4)
[2025-06-05 08:59:26] 2025-06-05 15:58:50,057 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-06-05 08:59:26] 2025-06-05 15:58:50,057 | INFO     | ..............................
[2025-06-05 08:59:26] 2025-06-05 15:58:50,057 | INFO     | . Timing measurements:
[2025-06-05 08:59:26] 2025-06-05 15:58:50,057 | INFO     | . get job = 0 s
[2025-06-05 08:59:26] 2025-06-05 15:58:50,057 | INFO     | . initial setup = 8 s
[2025-06-05 08:59:26] 2025-06-05 15:58:50,057 | INFO     | . payload setup = 53 s
[2025-06-05 08:59:26] 2025-06-05 15:58:50,057 | INFO     | . stage-in = 0 s
[2025-06-05 08:59:26] 2025-06-05 15:58:50,057 | INFO     | . payload execution = 112 s
[2025-06-05 08:59:26] 2025-06-05 15:58:50,057 | INFO     | . stage-out = 1 s
[2025-06-05 08:59:26] 2025-06-05 15:58:50,057 | INFO     | . log creation = 0 s
[2025-06-05 08:59:26] 2025-06-05 15:58:50,057 | INFO     | ..............................
[2025-06-05 08:59:26] 2025-06-05 15:58:50,057 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-05 08:59:26] 2025-06-05 15:58:50,058 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6680898485/pilotlog.txt
[2025-06-05 08:59:26] 2025-06-05 15:58:50,170 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-06-05 08:59:26] - Log from pilotlog.txt -
[2025-06-05 08:59:26] 2025-06-05 15:58:50,055 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6680898485/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 08:59:26] 2025-06-05 15:58:50,055 | INFO     | extracted standard info from prmon json
[2025-06-05 08:59:26] 2025-06-05 15:58:50,055 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 08:59:26] 2025-06-05 15:58:50,055 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 08:59:26] 2025-06-05 15:58:50,056 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 08:59:26] 2025-06-05 15:58:50,056 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 08:59:26] 2025-06-05 15:58:50,056 | WARNING  | wrong length of table data, x=[1749138895.0, 1749138956.0], y=[1949.0, 461188.0] (must be same and length>=4)
[2025-06-05 08:59:26] 2025-06-05 15:58:50,057 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-06-05 08:59:26] 2025-06-05 15:58:50,057 | INFO     | ..............................
[2025-06-05 08:59:26] 2025-06-05 15:58:50,057 | INFO     | . Timing measurements:
[2025-06-05 08:59:26] 2025-06-05 15:58:50,057 | INFO     | . get job = 0 s
[2025-06-05 08:59:26] 2025-06-05 15:58:50,057 | INFO     | . initial setup = 8 s
[2025-06-05 08:59:26] 2025-06-05 15:58:50,057 | INFO     | . payload setup = 53 s
[2025-06-05 08:59:26] 2025-06-05 15:58:50,057 | INFO     | . stage-in = 0 s
[2025-06-05 08:59:26] 2025-06-05 15:58:50,057 | INFO     | . payload execution = 112 s
[2025-06-05 08:59:26] 2025-06-05 15:58:50,057 | INFO     | . stage-out = 1 s
[2025-06-05 08:59:26] 2025-06-05 15:58:50,057 | INFO     | . log creation = 0 s
[2025-06-05 08:59:26] 2025-06-05 15:58:50,057 | INFO     | ..............................
[2025-06-05 08:59:26] 2025-06-05 15:58:50,057 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-05 08:59:26] 2025-06-05 15:58:50,058 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6680898485/pilotlog.txt
[2025-06-05 08:59:26] 2025-06-05 15:58:50,171 | WARNING  | 
[2025-06-05 08:59:26] [begin log extracts]
[2025-06-05 08:59:26] - Log from pilotlog.txt -
[2025-06-05 08:59:26] 2025-06-05 15:58:50,055 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6680898485/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 08:59:26] 2025-06-05 15:58:50,055 | INFO     | extracted standard info from prmon json
[2025-06-05 08:59:26] 2025-06-05 15:58:50,055 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 08:59:26] 2025-06-05 15:58:50,055 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 08:59:26] 2025-06-05 15:58:50,056 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 08:59:26] 2025-06-05 15:58:50,056 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 08:59:26] 2025-06-05 15:58:50,056 | WARNING  | wrong length of table data, x=[1749138895.0, 1749138956.0], y=[1949.0, 461188.0] (must be same and length>=4)
[2025-06-05 08:59:26] 2025-06-05 15:58:50,057 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-06-05 08:59:26] 2025-06-05 15:58:50,057 | INFO     | ..............................
[2025-06-05 08:59:26] 2025-06-05 15:58:50,057 | INFO     | . Timing measurements:
[2025-06-05 08:59:26] 2025-06-05 15:58:50,057 | INFO     | . get job = 0 s
[2025-06-05 08:59:26] 2025-06-05 15:58:50,057 | INFO     | . initial setup = 8 s
[2025-06-05 08:59:26] 2025-06-05 15:58:50,057 | INFO     | . payload setup = 53 s
[2025-06-05 08:59:26] 2025-06-05 15:58:50,057 | INFO     | . stage-in = 0 s
[2025-06-05 08:59:26] 2025-06-05 15:58:50,057 | INFO     | . payload execution = 112 s
[2025-06-05 08:59:26] 2025-06-05 15:58:50,057 | INFO     | . stage-out = 1 s
[2025-06-05 08:59:26] 2025-06-05 15:58:50,057 | INFO     | . log creation = 0 s
[2025-06-05 08:59:26] 2025-06-05 15:58:50,057 | INFO     | ..............................
[2025-06-05 08:59:26] 2025-06-05 15:58:50,057 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-05 08:59:26] 2025-06-05 15:58:50,058 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6680898485/pilotlog.txt
[2025-06-05 08:59:26] [end log extracts]
[2025-06-05 08:59:26] 2025-06-05 15:58:50,172 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-06-05 08:59:26] 2025-06-05 15:58:50,173 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-06-05 08:59:26] 2025-06-05 15:58:51,076 | INFO     | 
[2025-06-05 08:59:26] 2025-06-05 15:58:51,076 | INFO     | job summary report
[2025-06-05 08:59:26] 2025-06-05 15:58:51,076 | INFO     | --------------------------------------------------
[2025-06-05 08:59:26] 2025-06-05 15:58:51,077 | INFO     | PanDA job id: 6680898485
[2025-06-05 08:59:26] 2025-06-05 15:58:51,077 | INFO     | task id: 44871837
[2025-06-05 08:59:26] 2025-06-05 15:58:51,077 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-06-05 08:56:15,627 CRITICAL Transform executor raised TransformValidationExceptio
[2025-06-05 08:59:26] 2025-06-05 15:58:51,077 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 08:59:26] 2025-06-05 15:58:51,077 | INFO     | pilot state: failed 
[2025-06-05 08:59:26] 2025-06-05 15:58:51,077 | INFO     | transexitcode: 65
[2025-06-05 08:59:26] 2025-06-05 15:58:51,077 | INFO     | exeerrorcode: 65
[2025-06-05 08:59:26] 2025-06-05 15:58:51,077 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-06-05 08:59:26] 2025-06-05 15:58:51,077 | INFO     | exitcode: 65
[2025-06-05 08:59:26] 2025-06-05 15:58:51,078 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-06-05 08:59:26] 2025-06-05 15:58:51,078 | INFO     | cpuconsumptiontime: 20 s
[2025-06-05 08:59:26] 2025-06-05 15:58:51,078 | INFO     | nevents: 0
[2025-06-05 08:59:26] 2025-06-05 15:58:51,078 | INFO     | neventsw: 0
[2025-06-05 08:59:26] 2025-06-05 15:58:51,078 | INFO     | pid: 3673310
[2025-06-05 08:59:26] 2025-06-05 15:58:51,078 | INFO     | pgrp: 3673310
[2025-06-05 08:59:26] 2025-06-05 15:58:51,078 | INFO     | corecount: 8
[2025-06-05 08:59:26] 2025-06-05 15:58:51,078 | INFO     | event service: False
[2025-06-05 08:59:26] 2025-06-05 15:58:51,078 | INFO     | sizes: {0: 2397508, 1: 2397707, 2: 2397707, 12: 2397735, 23: 2397763, 33: 2398053, 34: 2398237, 170: 2421630, 171: 2421606, 173: 2425869, 175: 2425897, 311: 242637
[2025-06-05 08:59:26] 2025-06-05 15:58:51,078 | INFO     | --------------------------------------------------
[2025-06-05 08:59:26] 2025-06-05 15:58:51,078 | INFO     | 
[2025-06-05 08:59:26] 2025-06-05 15:58:51,078 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-06-05 08:59:26] 2025-06-05 15:58:51,318 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 08:59:26] 2025-06-05 15:58:51,318 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 08:59:26] 2025-06-05 15:58:51,318 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 08:59:26] 2025-06-05 15:58:51,318 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 08:59:26] 2025-06-05 15:58:51,318 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 08:59:26] 2025-06-05 15:58:51,318 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 08:59:26] 2025-06-05 15:58:51,318 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 08:59:26] 2025-06-05 15:58:51,318 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 08:59:26] 2025-06-05 15:58:51,318 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 08:59:26] 2025-06-05 15:58:51,318 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 08:59:26] 2025-06-05 15:58:51,319 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 08:59:26] 2025-06-05 15:58:51,319 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 08:59:26] 2025-06-05 15:58:51,319 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 08:59:26] 2025-06-05 15:58:51,319 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 08:59:26] 2025-06-05 15:58:51,319 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 08:59:26] 2025-06-05 15:58:51,319 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 08:59:26] 2025-06-05 15:58:51,319 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 08:59:26] 2025-06-05 15:58:51,319 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 08:59:26] 2025-06-05 15:58:51,319 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 08:59:26] 2025-06-05 15:58:51,319 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 08:59:26] 2025-06-05 15:58:51,319 | INFO     | job 6680898485 has completed (purged errors)
[2025-06-05 08:59:26] 2025-06-05 15:58:51,320 | INFO     | overall cleanup function is called
[2025-06-05 08:59:26] 2025-06-05 15:58:52,348 | INFO     | --- collectZombieJob: --- 10, [3673310]
[2025-06-05 08:59:26] 2025-06-05 15:58:52,348 | INFO     | zombie collector waiting for pid 3673310
[2025-06-05 08:59:26] 2025-06-05 15:58:52,348 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 08:59:26] 2025-06-05 15:58:52,349 | INFO     | collected zombie processes
[2025-06-05 08:59:26] 2025-06-05 15:58:52,349 | INFO     | will attempt to kill all subprocesses of pid=3673310
[2025-06-05 08:59:26] 2025-06-05 15:58:52,936 | INFO     | process IDs to be killed: [3673310] (in reverse order)
[2025-06-05 08:59:26] 2025-06-05 15:58:53,535 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 08:59:26] 2025-06-05 15:58:53,535 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 08:59:26] 2025-06-05 15:58:53,585 | INFO     | did not find any defunct processes belonging to 3673310
[2025-06-05 08:59:26] 2025-06-05 15:58:53,637 | INFO     | did not find any defunct processes belonging to 3673310
[2025-06-05 08:59:26] 2025-06-05 15:58:53,637 | INFO     | ready for new job
[2025-06-05 08:59:26] 2025-06-05 15:58:53,637 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 08:59:26] 2025-06-05 15:58:53,639 | INFO     | ***************************************
[2025-06-05 08:59:26] 2025-06-05 15:58:53,639 | INFO     | ***  PanDA Pilot version 3.10.3.82  ***
[2025-06-05 08:59:26] 2025-06-05 15:58:53,640 | INFO     | ***************************************
[2025-06-05 08:59:26] 2025-06-05 15:58:53,640 | INFO     | 
[2025-06-05 08:59:26] 2025-06-05 15:58:53,657 | INFO     | architecture information:
[2025-06-05 08:59:26] 2025-06-05 15:58:53,678 | INFO     | executing command: cat /etc/os-release
[2025-06-05 08:59:26] 2025-06-05 15:58:53,771 | INFO     | cat /etc/os-release:
[2025-06-05 08:59:26] NAME="CentOS Linux"
[2025-06-05 08:59:26] VERSION="7 (Core)"
[2025-06-05 08:59:26] ID="centos"
[2025-06-05 08:59:26] ID_LIKE="rhel fedora"
[2025-06-05 08:59:26] VERSION_ID="7"
[2025-06-05 08:59:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 08:59:26] ANSI_COLOR="0;31"
[2025-06-05 08:59:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 08:59:26] HOME_URL="https://www.centos.org/"
[2025-06-05 08:59:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 08:59:26] 
[2025-06-05 08:59:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 08:59:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 08:59:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 08:59:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 08:59:26] 
[2025-06-05 08:59:26] 2025-06-05 15:58:53,772 | INFO     | ***************************************
[2025-06-05 08:59:26] 2025-06-05 15:58:54,275 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-06-05 08:59:26] 2025-06-05 15:58:54,290 | INFO     | sufficient remaining disk space (1096837758976 B)
[2025-06-05 08:59:26] 2025-06-05 15:58:54,290 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 08:59:26] 2025-06-05 15:58:54,291 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 08:59:26] 2025-06-05 15:58:54,291 | INFO     | update_server=False
[2025-06-05 08:59:26] 2025-06-05 15:58:54,291 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 08:59:26] 2025-06-05 15:58:54,291 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 08:59:26] 2025-06-05 15:58:54,296 | INFO     | all job control threads have been joined
[2025-06-05 08:59:26] 2025-06-05 15:58:54,499 | INFO     | all data control threads have been joined
[2025-06-05 08:59:26] 2025-06-05 15:58:55,198 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 08:59:26] 2025-06-05 15:58:55,198 | INFO     | aborting loop
[2025-06-05 08:59:26] 2025-06-05 15:58:55,296 | INFO     | [job] retrieve thread has finished
[2025-06-05 08:59:26] 2025-06-05 15:58:55,303 | INFO     | [job] control thread has finished
[2025-06-05 08:59:26] 2025-06-05 15:58:55,314 | INFO     | all payload control threads have been joined
[2025-06-05 08:59:26] 2025-06-05 15:58:55,504 | INFO     | [data] control thread has finished
[2025-06-05 08:59:26] 2025-06-05 15:58:55,590 | INFO     | [payload] validate_post thread has finished
[2025-06-05 08:59:26] 2025-06-05 15:58:55,850 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 08:59:26] 2025-06-05 15:58:55,965 | INFO     | [job] validate thread has finished
[2025-06-05 08:59:26] 2025-06-05 15:58:56,023 | INFO     | [payload] failed_post thread has finished
[2025-06-05 08:59:26] 2025-06-05 15:58:56,091 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 08:59:26] 2025-06-05 15:58:56,123 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 08:59:26] 2025-06-05 15:58:56,204 | INFO     | [job] job monitor thread has finished
[2025-06-05 08:59:26] 2025-06-05 15:58:56,299 | INFO     | [data] copytool_out thread has finished
[2025-06-05 08:59:26] 2025-06-05 15:58:56,320 | INFO     | [payload] control thread has finished
[2025-06-05 08:59:26] 2025-06-05 15:58:56,345 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 08:59:26] 2025-06-05 15:58:56,472 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 08:59:26] 2025-06-05 15:58:56,597 | INFO     | [data] copytool_in thread has finished
[2025-06-05 08:59:26] 2025-06-05 15:58:56,640 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 08:59:26] 2025-06-05 15:58:57,097 | INFO     | [job] queue monitor thread has finished
[2025-06-05 08:59:26] 2025-06-05 15:59:00,358 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 08:59:26] 2025-06-05 15:59:01,389 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139916661315392)>', '<ExcThread(monitor, started 139916134573824)>']
[2025-06-05 08:59:26] 2025-06-05 15:59:06,416 | INFO     | all workflow threads have been joined
[2025-06-05 08:59:26] 2025-06-05 15:59:06,416 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 08:59:26] 2025-06-05 15:59:06,417 | INFO     | traces error code: 0
[2025-06-05 08:59:26] 2025-06-05 15:59:06,417 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 08:59:26] 2025-06-05 15:59:24,937 | INFO     | PID=3665075 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-05 08:59:26] 2025-06-05 15:59:24,949 | INFO     | .. there are 19 such processes running
[2025-06-05 08:59:26] 2025-06-05 15:59:24,949 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 08:59:26] 2025-06-05 15:59:24,949 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 08:59:26] 2025-06-05 15:59:24,949 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 08:59:26] 2025-06-05 15:59:24,949 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 08:59:26] 2025-06-05 15:59:24,949 | INFO     | [monitor] control thread has ended
[2025-06-05 08:59:26] 2025-06-05 15:59:25,221 [wrapper] ==== pilot stdout END ====
[2025-06-05 08:59:26] 2025-06-05 15:59:25,248 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 08:59:26] 2025-06-05 15:59:25,290 [wrapper] pilotpid: 3665075
[2025-06-05 08:59:26] 2025-06-05 15:59:25,292 [wrapper] Pilot exit status: 0
[2025-06-05 08:59:26] 2025-06-05 15:59:25,321 [wrapper] pandaids: 6680898485
[2025-06-05 08:59:26] 2025-06-05 15:59:25,373 [wrapper] cleanup supervisor_pilot 3665081 3665076
[2025-06-05 08:59:26] 2025-06-05 15:59:25,428 [wrapper] Test setup, not cleaning
[2025-06-05 08:59:26] 2025-06-05 15:59:25,462 [wrapper] apfmon messages muted
[2025-06-05 08:59:26] 2025-06-05 15:59:25,466 [wrapper] ==== wrapper stdout END ====
[2025-06-05 08:59:26] 2025-06-05 15:59:25,510 [wrapper] ==== wrapper stderr END ====
[2025-06-05 08:59:26]  *** Error codes and diagnostics ***
[2025-06-05 08:59:26]     "exeErrorCode": 65,
[2025-06-05 08:59:26]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-06-05 08:59:26]     "pilotErrorCode": 1305,
[2025-06-05 08:59:26]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-06-05 08:59:26]  *** Listing of results directory ***
[2025-06-05 08:59:26] total 223800
[2025-06-05 08:59:26] -rw-r--r--. 1 boinc boinc    529402 Jun  5 08:36 pilot3.tar.gz
[2025-06-05 08:59:26] -rwx------. 1 boinc boinc     37140 Jun  5 08:50 runpilot2-wrapper.sh
[2025-06-05 08:59:26] -rw-r--r--. 1 boinc boinc      5112 Jun  5 08:50 queuedata.json
[2025-06-05 08:59:26] -rw-r--r--. 1 boinc boinc       100 Jun  5 08:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 08:59:26] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 08:51 run_atlas
[2025-06-05 08:59:26] -rw-r--r--. 1 boinc boinc       105 Jun  5 08:51 job.xml
[2025-06-05 08:59:26] -rw-r--r--. 2 boinc boinc 225056457 Jun  5 08:51 EVNT.44871834._003378.pool.root.1
[2025-06-05 08:59:26] -rw-r--r--. 1 boinc boinc      6453 Jun  5 08:51 init_data.xml
[2025-06-05 08:59:26] -rw-r--r--. 2 boinc boinc     15095 Jun  5 08:51 start_atlas.sh
[2025-06-05 08:59:26] drwxrwx--x. 2 boinc boinc      4096 Jun  5 08:51 shared
[2025-06-05 08:59:26] -rw-r--r--. 2 boinc boinc    541915 Jun  5 08:51 input.tar.gz
[2025-06-05 08:59:26] -rw-r--r--. 1 boinc boinc         0 Jun  5 08:51 boinc_lockfile
[2025-06-05 08:59:26] -rw-r--r--. 1 boinc boinc      2558 Jun  5 08:51 pandaJob.out
[2025-06-05 08:59:26] -rw-------. 1 boinc boinc    983229 Jun  5 08:52 agis_schedconf.cvmfs.json
[2025-06-05 08:59:26] -rw-------. 1 boinc boinc   1598969 Jun  5 08:52 agis_ddmendpoints.agis.ALL.json
[2025-06-05 08:59:26] drwx------. 4 boinc boinc      4096 Jun  5 08:52 pilot3
[2025-06-05 08:59:26] -rw-r--r--. 1 boinc boinc       525 Jun  5 08:56 boinc_task_state.xml
[2025-06-05 08:59:26] -rw-------. 1 boinc boinc       997 Jun  5 08:56 memory_monitor_summary.json
[2025-06-05 08:59:26] -rw-------. 1 boinc boinc     22618 Jun  5 08:56 log.44871837._102308.job.log.tgz.1
[2025-06-05 08:59:26] -rw-------. 1 boinc boinc        95 Jun  5 08:58 pilot_heartbeat.json
[2025-06-05 08:59:26] -rw-------. 1 boinc boinc      8381 Jun  5 08:58 heartbeat.json
[2025-06-05 08:59:26] -rw-r--r--. 1 boinc boinc        23 Jun  5 08:59 wrapper_checkpoint.txt
[2025-06-05 08:59:26] -rw-r--r--. 1 boinc boinc      8192 Jun  5 08:59 boinc_mmap_file
[2025-06-05 08:59:26] -rw-------. 1 boinc boinc       823 Jun  5 08:59 pilotlog.txt
[2025-06-05 08:59:26] -rw-------. 1 boinc boinc     87786 Jun  5 08:59 log.44871837._102308.job.log.1
[2025-06-05 08:59:26] -rw-------. 1 boinc boinc       188 Jun  5 08:59 output.list
[2025-06-05 08:59:26] -rw-r--r--. 1 boinc boinc       620 Jun  5 08:59 runtime_log
[2025-06-05 08:59:26] -rw-------. 1 boinc boinc    133120 Jun  5 08:59 result.tar.gz
[2025-06-05 08:59:26] -rw-------. 1 boinc boinc       647 Jun  5 08:59 Wa0MDmp2Rh7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmv5nKDmelENln.diag
[2025-06-05 08:59:26] -rw-r--r--. 1 boinc boinc      8648 Jun  5 08:59 runtime_log.err
[2025-06-05 08:59:26] -rw-r--r--. 1 boinc boinc     22095 Jun  5 08:59 stderr.txt
[2025-06-05 08:59:26] No HITS result produced
[2025-06-05 08:59:26]  *** Contents of shared directory: ***
[2025-06-05 08:59:26] total 220464
[2025-06-05 08:59:26] -rw-r--r--. 2 boinc boinc 225056457 Jun  5 08:51 ATLAS.root_0
[2025-06-05 08:59:26] -rw-r--r--. 2 boinc boinc     15095 Jun  5 08:51 start_atlas.sh
[2025-06-05 08:59:26] -rw-r--r--. 2 boinc boinc    541915 Jun  5 08:51 input.tar.gz
[2025-06-05 08:59:26] -rw-------. 1 boinc boinc    133120 Jun  5 08:59 result.tar.gz
08:59:28 (3661489): run_atlas exited; CPU time 33.396386
08:59:28 (3661489): called boinc_finish(0)

</stderr_txt>
]]>

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