Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-05 16:45:11 (27036): Detected: vboxwrapper 26206
2025-06-05 16:45:11 (27036): Detected: BOINC client v7.20.2
2025-06-05 16:45:12 (27036): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-06-05 16:45:12 (27036): Successfully copied 'init_data.xml' to the shared directory.
2025-06-05 16:45:12 (27036): Create VM. (boinc_78530f73f72440ad, slot#17)
2025-06-05 16:45:13 (27036): Setting Memory Size for VM. (4100MB)
2025-06-05 16:45:13 (27036): Setting CPU Count for VM. (1)
2025-06-05 16:45:14 (27036): Setting Chipset Options for VM.
2025-06-05 16:45:14 (27036): Setting Graphics Controller Options for VM.
2025-06-05 16:45:14 (27036): Setting Boot Options for VM.
2025-06-05 16:45:14 (27036): Setting Network Configuration for NAT.
2025-06-05 16:45:15 (27036): Enabling VM Network Access.
2025-06-05 16:45:15 (27036): Disabling USB Support for VM.
2025-06-05 16:45:15 (27036): Disabling COM Port Support for VM.
2025-06-05 16:45:15 (27036): Disabling LPT Port Support for VM.
2025-06-05 16:45:16 (27036): Disabling Audio Support for VM.
2025-06-05 16:45:16 (27036): Disabling Clipboard Support for VM.
2025-06-05 16:45:16 (27036): Disabling Drag and Drop Support for VM.
2025-06-05 16:45:16 (27036): Adding storage controller(s) to VM.
2025-06-05 16:45:17 (27036): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-05 16:45:19 (27036): Adding VirtualBox Guest Additions to VM.
2025-06-05 16:45:20 (27036): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-05 16:45:20 (27036): forwarding host port 57895 to guest port 80
2025-06-05 16:45:20 (27036): Enabling remote desktop for VM.
2025-06-05 16:45:20 (27036): Required extension pack not installed, remote desktop not enabled.
2025-06-05 16:45:20 (27036): Enabling shared directory for VM.
2025-06-05 16:45:21 (27036): Starting VM using VBoxManage interface. (boinc_78530f73f72440ad, slot#17)
2025-06-05 16:45:28 (27036): Successfully started VM. (PID = '28056')
2025-06-05 16:45:28 (27036): Reporting VM Process ID to BOINC.
2025-06-05 16:45:28 (27036): Guest Log: BIOS: VirtualBox 7.1.6
2025-06-05 16:45:28 (27036): Guest Log: CPUID EDX: 0x178bfbff
2025-06-05 16:45:28 (27036): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-05 16:45:28 (27036): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-05 16:45:28 (27036): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-05 16:45:28 (27036): Detected: Web Application Enabled (http://localhost:57895)
2025-06-05 16:45:28 (27036): Preference change detected
2025-06-05 16:45:28 (27036): Setting CPU throttle for VM. (100%)
2025-06-05 16:45:29 (27036): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-05 16:45:30 (27036): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-05 16:45:30 (27036): Guest Log: BIOS: Booting from Hard Disk...
2025-06-05 16:45:33 (27036): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-05 16:45:33 (27036): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-05 16:45:33 (27036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-05 16:45:33 (27036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-05 16:45:33 (27036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-05 16:45:33 (27036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-05 16:45:33 (27036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-05 16:45:33 (27036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-05 16:45:33 (27036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-05 16:45:33 (27036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-05 16:45:33 (27036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-05 16:45:33 (27036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-05 16:45:33 (27036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-05 16:45:33 (27036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-05 16:45:33 (27036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-05 16:45:33 (27036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-05 16:45:33 (27036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-05 16:45:33 (27036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-05 16:45:33 (27036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-05 16:45:33 (27036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-05 16:45:33 (27036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-05 16:45:33 (27036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-05 16:45:33 (27036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-05 16:45:33 (27036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-05 16:45:33 (27036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-05 16:45:33 (27036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-05 16:45:33 (27036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-05 16:45:33 (27036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-05 16:45:33 (27036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-05 16:45:33 (27036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-05 16:45:33 (27036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-05 16:45:33 (27036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-05 16:45:38 (27036): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-05 16:45:38 (27036): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-05 16:45:50 (27036): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-05 16:45:50 (27036): Guest Log: 00:00:00.000157 main     Log opened 2025-06-05T16:45:48.028580000Z
2025-06-05 16:45:50 (27036): Guest Log: 00:00:00.000313 main     OS Product: Linux
2025-06-05 16:45:50 (27036): Guest Log: 00:00:00.000374 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-05 16:45:50 (27036): Guest Log: 00:00:00.000423 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-05 16:45:50 (27036): Guest Log: 00:00:00.000468 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-05 16:45:50 (27036): Guest Log: 00:00:00.000470 main     Process ID: 1257
2025-06-05 16:45:50 (27036): Guest Log: 00:00:00.000470 main     Package type: LINUX_64BITS_GENERIC
2025-06-05 16:45:50 (27036): Guest Log: 00:00:00.001900 main     5.2.32 r132073 started. Verbose level = 0
2025-06-05 16:45:50 (27036): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-05 16:45:50 (27036): Guest Log: [INFO] Mounting shared directory
2025-06-05 16:45:50 (27036): Guest Log: [INFO] Checking for init_data.xml
2025-06-05 16:45:57 (27036): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-05 16:45:57 (27036): Guest Log: [INFO] Detected branch: prod
2025-06-05 16:45:58 (27036): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-05 16:45:58 (27036): Guest Log: Copying input files
2025-06-05 16:45:59 (27036): Guest Log: Copied input files into RunAtlas.
2025-06-05 16:45:59 (27036): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-05 16:45:59 (27036): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-05 16:45:59 (27036): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-05 16:45:59 (27036): Guest Log: Further information can be found at the LHC@home message board.
2025-06-05 16:46:00 (27036): Guest Log: 00:00:10.022736 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 319 495 000ns (GuestNow=1 749 138 359 731 314 000 ns GuestLast=1 749 141 948 050 809 000 ns fSetTimeLastLoop=true )
2025-06-05 16:46:07 (27036): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-05 16:46:07 (27036): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-05 16:46:07 (27036): Guest Log: 2.6.3.0 1530 0 30088 146825 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-06-05 16:46:08 (27036): Guest Log: copied the webapp to /var/www
2025-06-05 16:46:08 (27036): Guest Log: core_number=1
2025-06-05 16:46:08 (27036): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-05 16:46:09 (27036): Guest Log:  *** Starting ATLAS job. (PandaID=6668325930 taskID=44871837) ***
2025-06-05 18:26:26 (27036): Status Report: Elapsed Time: '6000.358767'
2025-06-05 18:26:26 (27036): Status Report: CPU Time: '5990.531250'
2025-06-05 20:07:23 (27036): Status Report: Elapsed Time: '12000.416782'
2025-06-05 20:07:23 (27036): Status Report: CPU Time: '12012.687500'
2025-06-05 21:47:52 (27036): Status Report: Elapsed Time: '18001.393150'
2025-06-05 21:47:52 (27036): Status Report: CPU Time: '18014.734375'
2025-06-05 23:28:48 (27036): Status Report: Elapsed Time: '24002.212049'
2025-06-05 23:28:48 (27036): Status Report: CPU Time: '24051.156250'
2025-06-06 01:09:36 (27036): Status Report: Elapsed Time: '30002.991240'
2025-06-06 01:09:36 (27036): Status Report: CPU Time: '30071.765625'
2025-06-06 02:56:12 (27036): Status Report: Elapsed Time: '36003.684683'
2025-06-06 02:56:12 (27036): Status Report: CPU Time: '36433.125000'
2025-06-06 04:37:15 (27036): Status Report: Elapsed Time: '42004.459284'
2025-06-06 04:37:15 (27036): Status Report: CPU Time: '42473.484375'
2025-06-06 06:17:50 (27036): Status Report: Elapsed Time: '48004.459284'
2025-06-06 06:17:50 (27036): Status Report: CPU Time: '48481.656250'
2025-06-06 07:58:21 (27036): Status Report: Elapsed Time: '54004.940998'
2025-06-06 07:58:21 (27036): Status Report: CPU Time: '54487.984375'
2025-06-06 09:39:06 (27036): Status Report: Elapsed Time: '60005.048481'
2025-06-06 09:39:06 (27036): Status Report: CPU Time: '60508.343750'
2025-06-06 11:20:01 (27036): Status Report: Elapsed Time: '66005.095778'
2025-06-06 11:20:01 (27036): Status Report: CPU Time: '66535.781250'
2025-06-06 13:06:24 (27036): Status Report: Elapsed Time: '72006.019894'
2025-06-06 13:06:24 (27036): Status Report: CPU Time: '72887.515625'
2025-06-06 15:04:01 (27036): Status Report: Elapsed Time: '78007.013596'
2025-06-06 15:04:01 (27036): Status Report: CPU Time: '79915.453125'
2025-06-06 16:44:52 (27036): Status Report: Elapsed Time: '84007.921780'
2025-06-06 16:44:52 (27036): Status Report: CPU Time: '85944.187500'
2025-06-06 18:11:08 (27036): Guest Log:  *** Job finished ***
2025-06-06 18:11:08 (27036): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-06 18:11:08 (27036): Guest Log: 2025-06-06 17:10:29,937 | INFO     | [data] copytool_out thread has finished
2025-06-06 18:11:08 (27036): Guest Log: 2025-06-06 17:10:29,982 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-06-06 18:11:08 (27036): Guest Log: 2025-06-06 17:10:33,985 | INFO     | [data] queue_monitor thread has finished
2025-06-06 18:11:08 (27036): Guest Log: 2025-06-06 17:10:35,351 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139708132329280)>', '<ExcThread(monitor, started 139707551831808)>']
2025-06-06 18:11:08 (27036): Guest Log: 2025-06-06 17:10:36,303 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-06 18:11:08 (27036): Guest Log: 2025-06-06 17:10:36,303 | INFO     | [monitor] control thread has ended
2025-06-06 18:11:08 (27036): Guest Log: 2025-06-06 17:10:40,357 | INFO     | all workflow threads have been joined
2025-06-06 18:11:08 (27036): Guest Log: 2025-06-06 17:10:40,357 | INFO     | end of generic workflow (traces error code: 0)
2025-06-06 18:11:08 (27036): Guest Log: 2025-06-06 17:10:40,358 | INFO     | traces error code: 0
2025-06-06 18:11:08 (27036): Guest Log: 2025-06-06 17:10:40,358 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-06 18:11:08 (27036): Guest Log: 2025-06-06 17:10:40,533 [wrapper] ==== pilot stdout END ====
2025-06-06 18:11:08 (27036): Guest Log: 2025-06-06 17:10:40,537 [wrapper] ==== wrapper stdout RESUME ====
2025-06-06 18:11:08 (27036): Guest Log: 2025-06-06 17:10:40,541 [wrapper] pilotpid: 5789
2025-06-06 18:11:08 (27036): Guest Log: 2025-06-06 17:10:40,545 [wrapper] Pilot exit status: 0
2025-06-06 18:11:08 (27036): Guest Log: 2025-06-06 17:10:40,639 [wrapper] pandaids: 6668325930
2025-06-06 18:11:08 (27036): Guest Log: 2025-06-06 17:10:40,665 [wrapper] cleanup supervisor_pilot  4993 5790
2025-06-06 18:11:08 (27036): Guest Log: 2025-06-06 17:10:40,669 [wrapper] Test setup, not cleaning
2025-06-06 18:11:08 (27036): Guest Log: 2025-06-06 17:10:40,674 [wrapper] apfmon messages muted
2025-06-06 18:11:08 (27036): Guest Log: 2025-06-06 17:10:40,678 [wrapper] ==== wrapper stdout END ====
2025-06-06 18:11:08 (27036): Guest Log: 2025-06-06 17:10:40,682 [wrapper] ==== wrapper stderr END ====
2025-06-06 18:11:08 (27036): Guest Log:  *** Error codes and diagnostics ***
2025-06-06 18:11:08 (27036): Guest Log:     "exeErrorCode": 0,
2025-06-06 18:11:08 (27036): Guest Log:     "exeErrorDiag": "",
2025-06-06 18:11:08 (27036): Guest Log:     "pilotErrorCode": 0,
2025-06-06 18:11:08 (27036): Guest Log:     "pilotErrorDiag": "",
2025-06-06 18:11:08 (27036): Guest Log:  *** Listing of results directory ***
2025-06-06 18:11:08 (27036): Guest Log: total 210884
2025-06-06 18:11:08 (27036): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 28 09:38 pilot3.tar.gz
2025-06-06 18:11:08 (27036): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 28 09:45 queuedata.json
2025-06-06 18:11:08 (27036): Guest Log: -rwx------. 1 atlas atlas     37140 May 28 09:47 runpilot2-wrapper.sh
2025-06-06 18:11:08 (27036): Guest Log: -rwxr-xr-x. 1 atlas atlas     10548 Jun  5 15:45 init_data.xml
2025-06-06 18:11:08 (27036): Guest Log: -rwxr-xr-x. 1 atlas atlas    508875 Jun  5 15:45 input.tar.gz
2025-06-06 18:11:08 (27036): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  5 15:45 start_atlas.sh
2025-06-06 18:11:08 (27036): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  5 15:45 EVNT.44871834._003215.pool.root.1 -> /data/./ATLAS.root_0
2025-06-06 18:11:08 (27036): Guest Log: -rw-r--r--. 1 atlas atlas      2559 Jun  5 15:46 pandaJob.out
2025-06-06 18:11:08 (27036): Guest Log: -rw-------. 1 atlas atlas    983229 Jun  5 15:46 agis_schedconf.cvmfs.json
2025-06-06 18:11:08 (27036): Guest Log: drwx------. 4 atlas atlas      4096 Jun  5 15:46 pilot3
2025-06-06 18:11:08 (27036): Guest Log: -rw-------. 1 atlas atlas 194704315 Jun  6 17:09 HITS.44871837._082396.pool.root.1
2025-06-06 18:11:08 (27036): Guest Log: -rw-------. 1 atlas atlas        95 Jun  6 17:09 pilot_heartbeat.json
2025-06-06 18:11:08 (27036): Guest Log: -rw-------. 1 atlas atlas      1024 Jun  6 17:10 memory_monitor_summary.json
2025-06-06 18:11:08 (27036): Guest Log: -rw-------. 1 atlas atlas   1598969 Jun  6 17:10 agis_ddmendpoints.agis.ALL.json
2025-06-06 18:11:08 (27036): Guest Log: -rw-------. 1 atlas atlas    940275 Jun  6 17:10 log.44871837._082396.job.log.tgz.1
2025-06-06 18:11:08 (27036): Guest Log: -rw-------. 1 atlas atlas      7685 Jun  6 17:10 heartbeat.json
2025-06-06 18:11:08 (27036): Guest Log: -rw-------. 1 atlas atlas      4536 Jun  6 17:10 pilotlog.txt
2025-06-06 18:11:08 (27036): Guest Log: -rw-------. 1 atlas atlas   7795532 Jun  6 17:10 log.44871837._082396.job.log.1
2025-06-06 18:11:08 (27036): Guest Log: -rw-------. 1 atlas atlas       357 Jun  6 17:10 output.list
2025-06-06 18:11:08 (27036): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  6 17:10 runtime_log
2025-06-06 18:11:08 (27036): Guest Log: -rw-------. 1 atlas atlas   8755200 Jun  6 17:10 result.tar.gz
2025-06-06 18:11:08 (27036): Guest Log: -rw-------. 1 atlas atlas       658 Jun  6 17:10 SpPLDmRYSe7n9Rq4apOajLDm4fhM0noT9bVof3QYDm1HTKDmEyqDfm.diag
2025-06-06 18:11:08 (27036): Guest Log: -rw-r--r--. 1 atlas atlas      8465 Jun  6 17:10 runtime_log.err
2025-06-06 18:11:08 (27036): Guest Log: Looking for outputfile HITS.44871837._082396.pool.root.1
2025-06-06 18:11:08 (27036): Guest Log: HITS file was successfully produced
2025-06-06 18:11:08 (27036): Guest Log: -rw-------. 1 atlas atlas 194704315 Jun  6 17:09 /home/atlas/RunAtlas/HITS.44871837._082396.pool.root.1
2025-06-06 18:11:09 (27036): Guest Log: Successfully finished the ATLAS job!
2025-06-06 18:11:09 (27036): Guest Log: Copying the results back to the shared directory!
2025-06-06 18:11:09 (27036): Guest Log:  *** Contents of shared directory: ***
2025-06-06 18:11:09 (27036): Guest Log: total 416928
2025-06-06 18:11:09 (27036): Guest Log: -rwxrwxrwx. 1 root root 222928397 Jun  5 15:45 ATLAS.root_0
2025-06-06 18:11:09 (27036): Guest Log: -rwxrwxrwx. 1 root root 194704315 Jun  6  2025 HITS.pool.root.1
2025-06-06 18:11:09 (27036): Guest Log: -rwxrwxrwx. 1 root root     10548 Jun  5 15:45 init_data.xml
2025-06-06 18:11:09 (27036): Guest Log: -rwxrwxrwx. 1 root root    508875 Jun  5 15:44 input.tar.gz
2025-06-06 18:11:09 (27036): Guest Log: -rwxrwxrwx. 1 root root   8755200 Jun  6  2025 result.tar.gz
2025-06-06 18:11:09 (27036): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  5 15:44 start_atlas.sh
2025-06-06 18:11:09 (27036): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-06 18:11:10 (27036): VM Completion File Detected.
2025-06-06 18:11:10 (27036): Powering off VM.
2025-06-06 18:11:11 (27036): Successfully stopped VM.
2025-06-06 18:11:11 (27036): Deregistering VM. (boinc_78530f73f72440ad, slot#17)
2025-06-06 18:11:11 (27036): Removing network bandwidth throttle group from VM.
2025-06-06 18:11:11 (27036): Removing VM from VirtualBox.
18:11:16 (27036): called boinc_finish(0)

</stderr_txt>
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