Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
09:39:50 (2049969): wrapper (7.7.26015): starting
09:39:50 (2049969): wrapper: running run_atlas (--nthreads 12)
[2025-06-06 09:39:50] Arguments: --nthreads 12
[2025-06-06 09:39:50] Threads: 12
[2025-06-06 09:39:50] Checking for CVMFS
[2025-06-06 09:39:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 09:39:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 09:39:50] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 09:39:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 09:39:50] 2.12.7.0 600724 5194 60188 146847 2 55 2392861 4096000 0 130560 0 4025066 99.991 1165706 217 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-06-06 09:39:50] CVMFS is ok
[2025-06-06 09:39:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 09:39:50] Checking for apptainer binary...
[2025-06-06 09:39:50] apptainer is not installed, using version from CVMFS
[2025-06-06 09:39:50] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 09:39:51] lithium
[2025-06-06 09:39:51] apptainer works
[2025-06-06 09:39:51] Set ATHENA_PROC_NUMBER=12
[2025-06-06 09:39:51] Set ATHENA_CORE_NUMBER=12
[2025-06-06 09:39:51] Starting ATLAS job with PandaID=6680880106
[2025-06-06 09:39:51] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 11:12:51]  *** The last 200 lines of the pilot log: ***
[2025-06-06 11:12:51] 2025-06-06 09:11:36,705 | INFO     | monitor loop #417: job 0:6680880106 is in state 'finished'
[2025-06-06 11:12:51] 2025-06-06 09:11:36,706 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 11:12:51] 2025-06-06 09:11:39,209 | INFO     | monitor loop #418: job 0:6680880106 is in state 'finished'
[2025-06-06 11:12:51] 2025-06-06 09:11:39,209 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 11:12:51] 2025-06-06 09:11:41,713 | INFO     | monitor loop #419: job 0:6680880106 is in state 'finished'
[2025-06-06 11:12:51] 2025-06-06 09:11:41,713 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 11:12:51] 2025-06-06 09:11:44,216 | INFO     | monitor loop #420: job 0:6680880106 is in state 'finished'
[2025-06-06 11:12:51] 2025-06-06 09:11:44,216 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 11:12:51] 2025-06-06 09:11:46,721 | INFO     | monitor loop #421: job 0:6680880106 is in state 'finished'
[2025-06-06 11:12:51] 2025-06-06 09:11:46,721 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 11:12:51] 2025-06-06 09:11:47,081 | INFO     | PID=2053696 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-06 11:12:51] 2025-06-06 09:11:49,225 | INFO     | monitor loop #422: job 0:6680880106 is in state 'finished'
[2025-06-06 11:12:51] 2025-06-06 09:11:49,225 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 11:12:51] 2025-06-06 09:11:51,729 | INFO     | monitor loop #423: job 0:6680880106 is in state 'finished'
[2025-06-06 11:12:51] 2025-06-06 09:11:51,729 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 11:12:51] 2025-06-06 09:11:54,231 | INFO     | monitor loop #424: job 0:6680880106 is in state 'finished'
[2025-06-06 11:12:51] 2025-06-06 09:11:54,232 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 11:12:51] 2025-06-06 09:11:56,733 | INFO     | monitor loop #425: job 0:6680880106 is in state 'finished'
[2025-06-06 11:12:51] 2025-06-06 09:11:56,734 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 11:12:51] 2025-06-06 09:11:59,237 | INFO     | monitor loop #426: job 0:6680880106 is in state 'finished'
[2025-06-06 11:12:51] 2025-06-06 09:11:59,238 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 11:12:51] 2025-06-06 09:12:01,741 | INFO     | monitor loop #427: job 0:6680880106 is in state 'finished'
[2025-06-06 11:12:51] 2025-06-06 09:12:01,742 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 11:12:51] 2025-06-06 09:12:04,245 | INFO     | monitor loop #428: job 0:6680880106 is in state 'finished'
[2025-06-06 11:12:51] 2025-06-06 09:12:04,245 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 11:12:51] 2025-06-06 09:12:06,749 | INFO     | monitor loop #429: job 0:6680880106 is in state 'finished'
[2025-06-06 11:12:51] 2025-06-06 09:12:06,749 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 11:12:51] 2025-06-06 09:12:09,252 | INFO     | PID=2053696 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-06 11:12:51] 2025-06-06 09:12:09,253 | INFO     | monitor loop #430: job 0:6680880106 is in state 'finished'
[2025-06-06 11:12:51] 2025-06-06 09:12:09,253 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 11:12:51] 2025-06-06 09:12:11,756 | INFO     | monitor loop #431: job 0:6680880106 is in state 'finished'
[2025-06-06 11:12:51] 2025-06-06 09:12:11,757 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 11:12:51] 2025-06-06 09:12:14,257 | INFO     | monitor loop #432: job 0:6680880106 is in state 'finished'
[2025-06-06 11:12:51] 2025-06-06 09:12:14,258 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 11:12:51] 2025-06-06 09:12:16,761 | INFO     | monitor loop #433: job 0:6680880106 is in state 'finished'
[2025-06-06 11:12:51] 2025-06-06 09:12:16,762 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 11:12:51] 2025-06-06 09:12:19,265 | INFO     | monitor loop #434: job 0:6680880106 is in state 'finished'
[2025-06-06 11:12:51] 2025-06-06 09:12:19,265 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 11:12:51] 2025-06-06 09:12:19,340 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-06 11:12:51] 2025-06-06 09:12:19,341 | INFO     | found 8 cores (4 cores per socket, 2 sockets) HT, CPU MHz: 2268.0335
[2025-06-06 11:12:51] 2025-06-06 09:12:19,343 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6680880106/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 11:12:51] 2025-06-06 09:12:19,344 | INFO     | extracted standard info from prmon json
[2025-06-06 11:12:51] 2025-06-06 09:12:19,344 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 11:12:51] 2025-06-06 09:12:19,344 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 11:12:51] 2025-06-06 09:12:19,344 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 11:12:51] 2025-06-06 09:12:19,344 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 11:12:51] 2025-06-06 09:12:19,346 | INFO     | fitting pss+swap vs Time
[2025-06-06 11:12:51] 2025-06-06 09:12:19,346 | INFO     | sum of square deviations: 177275882.0
[2025-06-06 11:12:51] 2025-06-06 09:12:19,347 | INFO     | sum of deviations: 3875855576.0
[2025-06-06 11:12:51] 2025-06-06 09:12:19,347 | INFO     | mean x: 1749198432.0
[2025-06-06 11:12:51] 2025-06-06 09:12:19,347 | INFO     | mean y: 3108786.0
[2025-06-06 11:12:51] 2025-06-06 09:12:19,347 | INFO     | -- intersect: -38240336513.55663
[2025-06-06 11:12:51] 2025-06-06 09:12:19,347 | INFO     | intersect: -38240336513.55663
[2025-06-06 11:12:51] 2025-06-06 09:12:19,347 | INFO     | chi2: 0.02718647887031987
[2025-06-06 11:12:51] 2025-06-06 09:12:19,347 | INFO     | -- intersect: -38240336513.55663
[2025-06-06 11:12:51] 2025-06-06 09:12:19,347 | INFO     | current memory leak: 21.86 B/s (using 83 data points, chi2=0.03)
[2025-06-06 11:12:51] 2025-06-06 09:12:19,348 | INFO     | could have reported an average CPU frequency of 2614 MHz (6 samples)
[2025-06-06 11:12:51] 2025-06-06 09:12:19,348 | INFO     | ..............................
[2025-06-06 11:12:51] 2025-06-06 09:12:19,348 | INFO     | . Timing measurements:
[2025-06-06 11:12:51] 2025-06-06 09:12:19,348 | INFO     | . get job = 0 s
[2025-06-06 11:12:51] 2025-06-06 09:12:19,348 | INFO     | . initial setup = 4 s
[2025-06-06 11:12:51] 2025-06-06 09:12:19,348 | INFO     | . payload setup = 6 s
[2025-06-06 11:12:51] 2025-06-06 09:12:19,348 | INFO     | . stage-in = 0 s
[2025-06-06 11:12:51] 2025-06-06 09:12:19,348 | INFO     | . payload execution = 5433 s
[2025-06-06 11:12:51] 2025-06-06 09:12:19,349 | INFO     | . stage-out = 0 s
[2025-06-06 11:12:51] 2025-06-06 09:12:19,349 | INFO     | . log creation = 0 s
[2025-06-06 11:12:51] 2025-06-06 09:12:19,349 | INFO     | ..............................
[2025-06-06 11:12:51] 2025-06-06 09:12:19,431 | INFO     | 
[2025-06-06 11:12:51] 2025-06-06 09:12:19,431 | INFO     | job summary report
[2025-06-06 11:12:51] 2025-06-06 09:12:19,431 | INFO     | --------------------------------------------------
[2025-06-06 11:12:51] 2025-06-06 09:12:19,431 | INFO     | PanDA job id: 6680880106
[2025-06-06 11:12:51] 2025-06-06 09:12:19,431 | INFO     | task id: 45006595
[2025-06-06 11:12:51] 2025-06-06 09:12:19,431 | INFO     | errors: (none)
[2025-06-06 11:12:51] 2025-06-06 09:12:19,432 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 11:12:51] 2025-06-06 09:12:19,432 | INFO     | pilot state: finished 
[2025-06-06 11:12:51] 2025-06-06 09:12:19,432 | INFO     | transexitcode: 0
[2025-06-06 11:12:51] 2025-06-06 09:12:19,432 | INFO     | exeerrorcode: 0
[2025-06-06 11:12:51] 2025-06-06 09:12:19,432 | INFO     | exeerrordiag: 
[2025-06-06 11:12:51] 2025-06-06 09:12:19,432 | INFO     | exitcode: 0
[2025-06-06 11:12:51] 2025-06-06 09:12:19,432 | INFO     | exitmsg: OK
[2025-06-06 11:12:51] 2025-06-06 09:12:19,432 | INFO     | cpuconsumptiontime: 58497 s
[2025-06-06 11:12:51] 2025-06-06 09:12:19,432 | INFO     | nevents: 400
[2025-06-06 11:12:51] 2025-06-06 09:12:19,432 | INFO     | neventsw: 0
[2025-06-06 11:12:51] 2025-06-06 09:12:19,433 | INFO     | pid: 2060361
[2025-06-06 11:12:51] 2025-06-06 09:12:19,433 | INFO     | pgrp: 2060361
[2025-06-06 11:12:51] 2025-06-06 09:12:19,433 | INFO     | corecount: 12
[2025-06-06 11:12:51] 2025-06-06 09:12:19,433 | INFO     | event service: False
[2025-06-06 11:12:51] 2025-06-06 09:12:19,433 | INFO     | sizes: {0: 2397633, 3: 2397895, 11: 2397923, 5443: 2424423, 5444: 2433434, 5523: 2433572}
[2025-06-06 11:12:51] 2025-06-06 09:12:19,433 | INFO     | --------------------------------------------------
[2025-06-06 11:12:51] 2025-06-06 09:12:19,433 | INFO     | 
[2025-06-06 11:12:51] 2025-06-06 09:12:19,433 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-06-06 11:12:51] 2025-06-06 09:12:19,451 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 11:12:51] 2025-06-06 09:12:19,451 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 11:12:51] 2025-06-06 09:12:19,451 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 11:12:51] 2025-06-06 09:12:19,451 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 11:12:51] 2025-06-06 09:12:19,452 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 11:12:51] 2025-06-06 09:12:19,452 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 11:12:51] 2025-06-06 09:12:19,452 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 11:12:51] 2025-06-06 09:12:19,452 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 11:12:51] 2025-06-06 09:12:19,452 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 11:12:51] 2025-06-06 09:12:19,452 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 11:12:51] 2025-06-06 09:12:19,452 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 11:12:51] 2025-06-06 09:12:19,452 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 11:12:51] 2025-06-06 09:12:19,452 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 11:12:51] 2025-06-06 09:12:19,452 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 11:12:51] 2025-06-06 09:12:19,453 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 11:12:51] 2025-06-06 09:12:19,453 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 11:12:51] 2025-06-06 09:12:19,453 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 11:12:51] 2025-06-06 09:12:19,453 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 11:12:51] 2025-06-06 09:12:19,453 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 11:12:51] 2025-06-06 09:12:19,453 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 11:12:51] 2025-06-06 09:12:19,453 | INFO     | job 6680880106 has completed (purged errors)
[2025-06-06 11:12:51] 2025-06-06 09:12:19,453 | INFO     | overall cleanup function is called
[2025-06-06 11:12:51] 2025-06-06 09:12:20,457 | INFO     | --- collectZombieJob: --- 10, [2060361]
[2025-06-06 11:12:51] 2025-06-06 09:12:20,457 | INFO     | zombie collector waiting for pid 2060361
[2025-06-06 11:12:51] 2025-06-06 09:12:20,458 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 11:12:51] 2025-06-06 09:12:20,458 | INFO     | collected zombie processes
[2025-06-06 11:12:51] 2025-06-06 09:12:20,458 | INFO     | will attempt to kill all subprocesses of pid=2060361
[2025-06-06 11:12:51] 2025-06-06 09:12:20,540 | INFO     | process IDs to be killed: [2060361] (in reverse order)
[2025-06-06 11:12:51] 2025-06-06 09:12:20,584 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 11:12:51] 2025-06-06 09:12:20,584 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 11:12:51] 2025-06-06 09:12:20,587 | INFO     | did not find any defunct processes belonging to 2060361
[2025-06-06 11:12:51] 2025-06-06 09:12:20,590 | INFO     | did not find any defunct processes belonging to 2060361
[2025-06-06 11:12:51] 2025-06-06 09:12:20,590 | INFO     | ready for new job
[2025-06-06 11:12:51] 2025-06-06 09:12:20,590 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 11:12:51] 2025-06-06 09:12:20,591 | INFO     | ***************************************
[2025-06-06 11:12:51] 2025-06-06 09:12:20,591 | INFO     | ***  PanDA Pilot version 3.10.3.82  ***
[2025-06-06 11:12:51] 2025-06-06 09:12:20,591 | INFO     | ***************************************
[2025-06-06 11:12:51] 2025-06-06 09:12:20,592 | INFO     | 
[2025-06-06 11:12:51] 2025-06-06 09:12:20,611 | INFO     | architecture information:
[2025-06-06 11:12:51] 2025-06-06 09:12:20,611 | INFO     | executing command: cat /etc/os-release
[2025-06-06 11:12:51] 2025-06-06 09:12:20,623 | INFO     | cat /etc/os-release:
[2025-06-06 11:12:51] NAME="CentOS Linux"
[2025-06-06 11:12:51] VERSION="7 (Core)"
[2025-06-06 11:12:51] ID="centos"
[2025-06-06 11:12:51] ID_LIKE="rhel fedora"
[2025-06-06 11:12:51] VERSION_ID="7"
[2025-06-06 11:12:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 11:12:51] ANSI_COLOR="0;31"
[2025-06-06 11:12:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 11:12:51] HOME_URL="https://www.centos.org/"
[2025-06-06 11:12:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 11:12:51] 
[2025-06-06 11:12:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 11:12:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 11:12:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 11:12:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 11:12:51] 
[2025-06-06 11:12:51] 2025-06-06 09:12:20,623 | INFO     | ***************************************
[2025-06-06 11:12:51] 2025-06-06 09:12:21,126 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-06-06 11:12:51] 2025-06-06 09:12:21,137 | INFO     | sufficient remaining disk space (37415288832 B)
[2025-06-06 11:12:51] 2025-06-06 09:12:21,137 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 11:12:51] 2025-06-06 09:12:21,138 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 11:12:51] 2025-06-06 09:12:21,138 | INFO     | update_server=False
[2025-06-06 11:12:51] 2025-06-06 09:12:21,138 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 11:12:51] 2025-06-06 09:12:21,138 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 11:12:51] 2025-06-06 09:12:21,138 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 11:12:51] 2025-06-06 09:12:21,138 | INFO     | aborting loop
[2025-06-06 11:12:51] 2025-06-06 09:12:21,524 | INFO     | all payload control threads have been joined
[2025-06-06 11:12:51] 2025-06-06 09:12:21,573 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 11:12:51] 2025-06-06 09:12:21,889 | INFO     | all data control threads have been joined
[2025-06-06 11:12:51] 2025-06-06 09:12:22,141 | INFO     | [job] retrieve thread has finished
[2025-06-06 11:12:51] 2025-06-06 09:12:22,143 | INFO     | [job] queue monitor thread has finished
[2025-06-06 11:12:51] 2025-06-06 09:12:22,144 | INFO     | [job] job monitor thread has finished
[2025-06-06 11:12:51] 2025-06-06 09:12:22,207 | INFO     | [data] copytool_in thread has finished
[2025-06-06 11:12:51] 2025-06-06 09:12:22,253 | INFO     | all job control threads have been joined
[2025-06-06 11:12:51] 2025-06-06 09:12:22,454 | INFO     | [payload] failed_post thread has finished
[2025-06-06 11:12:51] 2025-06-06 09:12:22,529 | INFO     | [payload] control thread has finished
[2025-06-06 11:12:51] 2025-06-06 09:12:22,531 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 11:12:51] 2025-06-06 09:12:22,594 | INFO     | [payload] validate_post thread has finished
[2025-06-06 11:12:51] 2025-06-06 09:12:22,895 | INFO     | [data] control thread has finished
[2025-06-06 11:12:51] 2025-06-06 09:12:23,067 | INFO     | [job] validate thread has finished
[2025-06-06 11:12:51] 2025-06-06 09:12:23,257 | INFO     | [job] control thread has finished
[2025-06-06 11:12:51] 2025-06-06 09:12:23,305 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 11:12:51] 2025-06-06 09:12:23,378 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 11:12:51] 2025-06-06 09:12:23,579 | INFO     | [data] copytool_out thread has finished
[2025-06-06 11:12:51] 2025-06-06 09:12:23,610 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 11:12:51] 2025-06-06 09:12:23,637 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 11:12:51] 2025-06-06 09:12:27,643 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 11:12:51] 2025-06-06 09:12:28,219 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139631916091200)>', '<ExcThread(monitor, started 139631123228416)>']
[2025-06-06 11:12:51] 2025-06-06 09:12:33,241 | INFO     | all workflow threads have been joined
[2025-06-06 11:12:51] 2025-06-06 09:12:33,242 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 11:12:51] 2025-06-06 09:12:33,243 | INFO     | traces error code: 0
[2025-06-06 11:12:51] 2025-06-06 09:12:33,243 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 11:12:51] 2025-06-06 09:12:51,469 | INFO     | PID=2053696 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-06 11:12:51] 2025-06-06 09:12:51,470 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 11:12:51] 2025-06-06 09:12:51,470 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 11:12:51] 2025-06-06 09:12:51,471 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 11:12:51] 2025-06-06 09:12:51,471 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 11:12:51] 2025-06-06 09:12:51,471 | INFO     | [monitor] control thread has ended
[2025-06-06 11:12:51] 2025-06-06 09:12:51,553 [wrapper] ==== pilot stdout END ====
[2025-06-06 11:12:51] 2025-06-06 09:12:51,556 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 11:12:51] 2025-06-06 09:12:51,558 [wrapper] pilotpid: 2053696
[2025-06-06 11:12:51] 2025-06-06 09:12:51,560 [wrapper] Pilot exit status: 0
[2025-06-06 11:12:51] 2025-06-06 09:12:51,570 [wrapper] pandaids: 6680880106
[2025-06-06 11:12:51] 2025-06-06 09:12:51,595 [wrapper] cleanup supervisor_pilot 2072209 2053697
[2025-06-06 11:12:51] 2025-06-06 09:12:51,598 [wrapper] Test setup, not cleaning
[2025-06-06 11:12:51] 2025-06-06 09:12:51,600 [wrapper] apfmon messages muted
[2025-06-06 11:12:51] 2025-06-06 09:12:51,603 [wrapper] ==== wrapper stdout END ====
[2025-06-06 11:12:51] 2025-06-06 09:12:51,605 [wrapper] ==== wrapper stderr END ====
[2025-06-06 11:12:51]  *** Error codes and diagnostics ***
[2025-06-06 11:12:51]     "exeErrorCode": 0,
[2025-06-06 11:12:51]     "exeErrorDiag": "",
[2025-06-06 11:12:51]     "pilotErrorCode": 0,
[2025-06-06 11:12:51]     "pilotErrorDiag": "",
[2025-06-06 11:12:51]  *** Listing of results directory ***
[2025-06-06 11:12:51] total 384224
[2025-06-06 11:12:51] -rwx------ 1 boinc boinc     37140 Jun  5 17:26 runpilot2-wrapper.sh
[2025-06-06 11:12:51] -rw-r--r-- 1 boinc boinc      5112 Jun  5 17:26 queuedata.json
[2025-06-06 11:12:51] -rw-r--r-- 1 boinc boinc    529402 Jun  5 17:26 pilot3.tar.gz
[2025-06-06 11:12:51] -rw-r--r-- 1 boinc boinc       100 Jun  6 09:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 11:12:51] -rwxr-xr-x 1 boinc boinc      7986 Jun  6 09:39 run_atlas
[2025-06-06 11:12:51] -rw-r--r-- 1 boinc boinc       105 Jun  6 09:39 job.xml
[2025-06-06 11:12:51] -rw-r--r-- 2 boinc boinc     15095 Jun  6 09:39 start_atlas.sh
[2025-06-06 11:12:51] drwxrwx--x 2 boinc boinc      4096 Jun  6 09:39 shared
[2025-06-06 11:12:51] -rw-r--r-- 2 boinc boinc    541901 Jun  6 09:39 input.tar.gz
[2025-06-06 11:12:51] -rw-r--r-- 1 boinc boinc      6048 Jun  6 09:39 init_data.xml
[2025-06-06 11:12:51] -rw-r--r-- 2 boinc boinc 212673336 Jun  6 09:39 EVNT.45006593._000351.pool.root.1
[2025-06-06 11:12:51] -rw-r--r-- 1 boinc boinc         0 Jun  6 09:39 boinc_lockfile
[2025-06-06 11:12:51] -rw-r--r-- 1 boinc boinc      2521 Jun  6 09:39 pandaJob.out
[2025-06-06 11:12:51] -rw------- 1 boinc boinc    987967 Jun  6 09:40 agis_schedconf.cvmfs.json
[2025-06-06 11:12:51] -rw------- 1 boinc boinc   1598969 Jun  6 09:40 agis_ddmendpoints.agis.ALL.json
[2025-06-06 11:12:51] drwx------ 4 boinc boinc      4096 Jun  6 09:40 pilot3
[2025-06-06 11:12:51] -rw------- 1 boinc boinc 175085329 Jun  6 11:10 HITS.45006595._057100.pool.root.1
[2025-06-06 11:12:51] -rw-r--r-- 1 boinc boinc       529 Jun  6 11:10 boinc_task_state.xml
[2025-06-06 11:12:51] -rw------- 1 boinc boinc      1066 Jun  6 11:10 memory_monitor_summary.json
[2025-06-06 11:12:51] -rw------- 1 boinc boinc    371280 Jun  6 11:11 log.45006595._057100.job.log.tgz.1
[2025-06-06 11:12:51] -rw------- 1 boinc boinc      7767 Jun  6 11:12 heartbeat.json
[2025-06-06 11:12:51] -rw-r--r-- 1 boinc boinc      8192 Jun  6 11:12 boinc_mmap_file
[2025-06-06 11:12:51] -rw-r--r-- 1 boinc boinc        27 Jun  6 11:12 wrapper_checkpoint.txt
[2025-06-06 11:12:51] -rw------- 1 boinc boinc       747 Jun  6 11:12 pilotlog.txt
[2025-06-06 11:12:51] -rw------- 1 boinc boinc        95 Jun  6 11:12 pilot_heartbeat.json
[2025-06-06 11:12:51] -rw------- 1 boinc boinc    520855 Jun  6 11:12 log.45006595._057100.job.log.1
[2025-06-06 11:12:51] -rw------- 1 boinc boinc       357 Jun  6 11:12 output.list
[2025-06-06 11:12:51] -rw-r--r-- 1 boinc boinc       620 Jun  6 11:12 runtime_log
[2025-06-06 11:12:51] -rw------- 1 boinc boinc    911360 Jun  6 11:12 result.tar.gz
[2025-06-06 11:12:51] -rw-r--r-- 1 boinc boinc      8717 Jun  6 11:12 runtime_log.err
[2025-06-06 11:12:51] -rw------- 1 boinc boinc       654 Jun  6 11:12 IMDODmueRh7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmq5nKDmvccEmn.diag
[2025-06-06 11:12:51] -rw-r--r-- 1 boinc boinc     22288 Jun  6 11:12 stderr.txt
[2025-06-06 11:12:51] HITS file was successfully produced:
[2025-06-06 11:12:51] -rw------- 1 boinc boinc 175085329 Jun  6 11:10 shared/HITS.pool.root.1
[2025-06-06 11:12:51]  *** Contents of shared directory: ***
[2025-06-06 11:12:51] total 380124
[2025-06-06 11:12:51] -rw-r--r-- 2 boinc boinc     15095 Jun  6 09:39 start_atlas.sh
[2025-06-06 11:12:51] -rw-r--r-- 2 boinc boinc    541901 Jun  6 09:39 input.tar.gz
[2025-06-06 11:12:51] -rw-r--r-- 2 boinc boinc 212673336 Jun  6 09:39 ATLAS.root_0
[2025-06-06 11:12:51] -rw------- 1 boinc boinc 175085329 Jun  6 11:10 HITS.pool.root.1
[2025-06-06 11:12:51] -rw------- 1 boinc boinc    911360 Jun  6 11:12 result.tar.gz
11:12:52 (2049969): run_atlas exited; CPU time 58011.742456
11:12:52 (2049969): called boinc_finish(0)

</stderr_txt>
]]>

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