Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:08:51 (456): wrapper (7.7.26015): starting
11:08:51 (456): wrapper: running run_atlas (--nthreads 12)
[2025-06-05 11:08:51] Arguments: --nthreads 12
[2025-06-05 11:08:51] Threads: 12
[2025-06-05 11:08:51] Checking for CVMFS
[2025-06-05 11:08:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 11:08:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 11:08:51] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 11:08:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 11:08:51] 2.11.2.0 3255 37237 92764 146822 1 1 15899491 20275200 1 130560 0 16957811 99.986 6213947 7693 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-05 11:08:51] CVMFS is ok
[2025-06-05 11:08:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 11:08:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 11:08:51] Further information can be found at the LHC@home message board.
[2025-06-05 11:08:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 11:08:51] Checking for apptainer binary...
[2025-06-05 11:08:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 11:08:51] Running /usr/bin/apptainer --version
[2025-06-05 11:08:51] apptainer version 1.3.2-1.el7
[2025-06-05 11:08:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 11:08:52] c-115-41.aglt2.org
[2025-06-05 11:08:52] apptainer works
[2025-06-05 11:08:52] Set ATHENA_PROC_NUMBER=12
[2025-06-05 11:08:52] Set ATHENA_CORE_NUMBER=12
[2025-06-05 11:08:52] Starting ATLAS job with PandaID=6669233850
[2025-06-05 11:08:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 12:38:16]  *** The last 200 lines of the pilot log: ***
[2025-06-05 12:38:16]  filetype=log
[2025-06-05 12:38:16]  guid=b2347131-8a26-4b8f-b8a6-ec38af378340
[2025-06-05 12:38:16]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-05 12:38:16]  is_altstaged=None
[2025-06-05 12:38:16]  is_tar=False
[2025-06-05 12:38:16]  lfn=log.44871837._094415.job.log.tgz.1
[2025-06-05 12:38:16]  mtime=0
[2025-06-05 12:38:16]  protocol_id=None
[2025-06-05 12:38:16]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-05 12:38:16]  replicas=None
[2025-06-05 12:38:16]  scope=mc23_13p6TeV
[2025-06-05 12:38:16]  status=None
[2025-06-05 12:38:16]  status_code=0
[2025-06-05 12:38:16]  storage_token=
[2025-06-05 12:38:16]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6669233850/log.44871837._094415.job.log.tgz.1
[2025-06-05 12:38:16]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8b/94/log.44871837._094415.job.log.tgz.1
[2025-06-05 12:38:16]  workdir=None
[2025-06-05 12:38:16] ]
[2025-06-05 12:38:16] 2025-06-05 16:37:51,668 | INFO     | transferring file log.44871837._094415.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6669233850/log.44871837._094415.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-05 12:38:16] 2025-06-05 16:37:51,669 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6669233850/log.44871837._094415.job.log.tgz.1 /tmp/boinchome/slots/0/log.44871837._094415.job
[2025-06-05 12:38:16] 2025-06-05 16:37:51,690 | INFO     | adding to output.list: log.44871837._094415.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8b/94/log.44871837._094415.job.log.tg
[2025-06-05 12:38:16] 2025-06-05 16:37:51,691 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-05 12:38:16] 2025-06-05 16:37:51,691 | INFO     | summary of transferred files:
[2025-06-05 12:38:16] 2025-06-05 16:37:51,691 | INFO     |  -- lfn=log.44871837._094415.job.log.tgz.1, status_code=0, status=transferred
[2025-06-05 12:38:16] 2025-06-05 16:37:51,692 | INFO     | stage-out finished correctly
[2025-06-05 12:38:16] 2025-06-05 16:37:51,772 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-05 12:38:16] 2025-06-05 16:37:52,039 | INFO     | job 6669233850 has state=finished
[2025-06-05 12:38:16] 2025-06-05 16:37:52,039 | INFO     | preparing for final server update for job 6669233850 in state='finished'
[2025-06-05 12:38:16] 2025-06-05 16:37:52,040 | INFO     | this job has now completed (state=finished)
[2025-06-05 12:38:16] 2025-06-05 16:37:52,040 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-05 12:38:16] 2025-06-05 16:37:52,040 | INFO     | log transfer has been attempted: DONE
[2025-06-05 12:38:16] 2025-06-05 16:37:52,041 | INFO     | job 6669233850 has finished - writing final server update
[2025-06-05 12:38:16] 2025-06-05 16:37:52,041 | INFO     | total number of processed events: 400 (read)
[2025-06-05 12:38:16] 2025-06-05 16:37:52,042 | INFO     | executing command: lscpu
[2025-06-05 12:38:16] 2025-06-05 16:37:52,069 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 12:38:16] 2025-06-05 16:37:52,748 | INFO     | monitor loop #398: job 0:6669233850 is in state 'finished'
[2025-06-05 12:38:16] 2025-06-05 16:37:52,748 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 12:38:16] 2025-06-05 16:37:53,578 | INFO     | PID=4362 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-06-05 12:38:16] 2025-06-05 16:37:55,251 | INFO     | monitor loop #399: job 0:6669233850 is in state 'finished'
[2025-06-05 12:38:16] 2025-06-05 16:37:55,251 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 12:38:16] 2025-06-05 16:37:57,041 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-05 12:38:16] 2025-06-05 16:37:57,041 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6669233850/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 12:38:16] 2025-06-05 16:37:57,042 | INFO     | extracted standard info from prmon json
[2025-06-05 12:38:16] 2025-06-05 16:37:57,042 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 12:38:16] 2025-06-05 16:37:57,043 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 12:38:16] 2025-06-05 16:37:57,043 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 12:38:16] 2025-06-05 16:37:57,043 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 12:38:16] 2025-06-05 16:37:57,045 | INFO     | fitting pss+swap vs Time
[2025-06-05 12:38:16] 2025-06-05 16:37:57,046 | INFO     | sum of square deviations: 158737860.0
[2025-06-05 12:38:16] 2025-06-05 16:37:57,046 | INFO     | sum of deviations: -711965038.0
[2025-06-05 12:38:16] 2025-06-05 16:37:57,046 | INFO     | mean x: 1749138892.5
[2025-06-05 12:38:16] 2025-06-05 16:37:57,047 | INFO     | mean y: 2749192.95
[2025-06-05 12:38:16] 2025-06-05 16:37:57,047 | INFO     | -- intersect: 7847920710.734355
[2025-06-05 12:38:16] 2025-06-05 16:37:57,047 | INFO     | intersect: 7847920710.734355
[2025-06-05 12:38:16] 2025-06-05 16:37:57,047 | INFO     | chi2: 0.004344361773764599
[2025-06-05 12:38:16] 2025-06-05 16:37:57,047 | INFO     | -- intersect: 7847920710.734355
[2025-06-05 12:38:16] 2025-06-05 16:37:57,048 | INFO     | current memory leak: -4.49 B/s (using 80 data points, chi2=0.00)
[2025-06-05 12:38:16] 2025-06-05 16:37:57,048 | INFO     | ..............................
[2025-06-05 12:38:16] 2025-06-05 16:37:57,048 | INFO     | . Timing measurements:
[2025-06-05 12:38:16] 2025-06-05 16:37:57,048 | INFO     | . get job = 0 s
[2025-06-05 12:38:16] 2025-06-05 16:37:57,048 | INFO     | . initial setup = 2 s
[2025-06-05 12:38:16] 2025-06-05 16:37:57,049 | INFO     | . payload setup = 9 s
[2025-06-05 12:38:16] 2025-06-05 16:37:57,049 | INFO     | . stage-in = 0 s
[2025-06-05 12:38:16] 2025-06-05 16:37:57,049 | INFO     | . payload execution = 5293 s
[2025-06-05 12:38:16] 2025-06-05 16:37:57,049 | INFO     | . stage-out = 0 s
[2025-06-05 12:38:16] 2025-06-05 16:37:57,049 | INFO     | . log creation = 0 s
[2025-06-05 12:38:16] 2025-06-05 16:37:57,049 | INFO     | ..............................
[2025-06-05 12:38:16] 2025-06-05 16:37:57,475 | INFO     | 
[2025-06-05 12:38:16] 2025-06-05 16:37:57,475 | INFO     | job summary report
[2025-06-05 12:38:16] 2025-06-05 16:37:57,475 | INFO     | --------------------------------------------------
[2025-06-05 12:38:16] 2025-06-05 16:37:57,475 | INFO     | PanDA job id: 6669233850
[2025-06-05 12:38:16] 2025-06-05 16:37:57,476 | INFO     | task id: 44871837
[2025-06-05 12:38:16] 2025-06-05 16:37:57,476 | INFO     | errors: (none)
[2025-06-05 12:38:16] 2025-06-05 16:37:57,476 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 12:38:16] 2025-06-05 16:37:57,476 | INFO     | pilot state: finished 
[2025-06-05 12:38:16] 2025-06-05 16:37:57,476 | INFO     | transexitcode: 0
[2025-06-05 12:38:16] 2025-06-05 16:37:57,476 | INFO     | exeerrorcode: 0
[2025-06-05 12:38:16] 2025-06-05 16:37:57,476 | INFO     | exeerrordiag: 
[2025-06-05 12:38:16] 2025-06-05 16:37:57,477 | INFO     | exitcode: 0
[2025-06-05 12:38:16] 2025-06-05 16:37:57,477 | INFO     | exitmsg: OK
[2025-06-05 12:38:16] 2025-06-05 16:37:57,477 | INFO     | cpuconsumptiontime: 58055 s
[2025-06-05 12:38:16] 2025-06-05 16:37:57,477 | INFO     | nevents: 400
[2025-06-05 12:38:16] 2025-06-05 16:37:57,477 | INFO     | neventsw: 0
[2025-06-05 12:38:16] 2025-06-05 16:37:57,477 | INFO     | pid: 10863
[2025-06-05 12:38:16] 2025-06-05 16:37:57,478 | INFO     | pgrp: 10863
[2025-06-05 12:38:16] 2025-06-05 16:37:57,478 | INFO     | corecount: 12
[2025-06-05 12:38:16] 2025-06-05 16:37:57,478 | INFO     | event service: False
[2025-06-05 12:38:16] 2025-06-05 16:37:57,478 | INFO     | sizes: {0: 2397342, 1: 2397342, 5: 2397576, 11: 2397632, 5307: 2424028, 5308: 2433153, 5313: 2433267}
[2025-06-05 12:38:16] 2025-06-05 16:37:57,478 | INFO     | --------------------------------------------------
[2025-06-05 12:38:16] 2025-06-05 16:37:57,478 | INFO     | 
[2025-06-05 12:38:16] 2025-06-05 16:37:57,479 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 12:38:16] 2025-06-05 16:37:57,505 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 12:38:16] 2025-06-05 16:37:57,505 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 12:38:16] 2025-06-05 16:37:57,505 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 12:38:16] 2025-06-05 16:37:57,505 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 12:38:16] 2025-06-05 16:37:57,505 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 12:38:16] 2025-06-05 16:37:57,505 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 12:38:16] 2025-06-05 16:37:57,505 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 12:38:16] 2025-06-05 16:37:57,506 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 12:38:16] 2025-06-05 16:37:57,506 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 12:38:16] 2025-06-05 16:37:57,506 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 12:38:16] 2025-06-05 16:37:57,506 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 12:38:16] 2025-06-05 16:37:57,506 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 12:38:16] 2025-06-05 16:37:57,506 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 12:38:16] 2025-06-05 16:37:57,506 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 12:38:16] 2025-06-05 16:37:57,506 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 12:38:16] 2025-06-05 16:37:57,506 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 12:38:16] 2025-06-05 16:37:57,507 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 12:38:16] 2025-06-05 16:37:57,507 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 12:38:16] 2025-06-05 16:37:57,507 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 12:38:16] 2025-06-05 16:37:57,507 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 12:38:16] 2025-06-05 16:37:57,507 | INFO     | job 6669233850 has completed (purged errors)
[2025-06-05 12:38:16] 2025-06-05 16:37:57,507 | INFO     | overall cleanup function is called
[2025-06-05 12:38:16] 2025-06-05 16:37:58,515 | INFO     | --- collectZombieJob: --- 10, [10863]
[2025-06-05 12:38:16] 2025-06-05 16:37:58,515 | INFO     | zombie collector waiting for pid 10863
[2025-06-05 12:38:16] 2025-06-05 16:37:58,515 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 12:38:16] 2025-06-05 16:37:58,515 | INFO     | collected zombie processes
[2025-06-05 12:38:16] 2025-06-05 16:37:58,516 | INFO     | will attempt to kill all subprocesses of pid=10863
[2025-06-05 12:38:16] 2025-06-05 16:37:58,606 | INFO     | process IDs to be killed: [10863] (in reverse order)
[2025-06-05 12:38:16] 2025-06-05 16:37:58,654 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 12:38:16] 2025-06-05 16:37:58,654 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 12:38:16] 2025-06-05 16:37:58,658 | INFO     | did not find any defunct processes belonging to 10863
[2025-06-05 12:38:16] 2025-06-05 16:37:58,662 | INFO     | did not find any defunct processes belonging to 10863
[2025-06-05 12:38:16] 2025-06-05 16:37:58,662 | INFO     | ready for new job
[2025-06-05 12:38:16] 2025-06-05 16:37:58,662 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 12:38:16] 2025-06-05 16:37:58,663 | INFO     | **************************************
[2025-06-05 12:38:16] 2025-06-05 16:37:58,663 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 12:38:16] 2025-06-05 16:37:58,664 | INFO     | **************************************
[2025-06-05 12:38:16] 2025-06-05 16:37:58,664 | INFO     | 
[2025-06-05 12:38:16] 2025-06-05 16:37:58,664 | INFO     | architecture information:
[2025-06-05 12:38:16] 2025-06-05 16:37:58,665 | INFO     | executing command: cat /etc/os-release
[2025-06-05 12:38:16] 2025-06-05 16:37:58,680 | INFO     | cat /etc/os-release:
[2025-06-05 12:38:16] NAME="CentOS Linux"
[2025-06-05 12:38:16] VERSION="7 (Core)"
[2025-06-05 12:38:16] ID="centos"
[2025-06-05 12:38:16] ID_LIKE="rhel fedora"
[2025-06-05 12:38:16] VERSION_ID="7"
[2025-06-05 12:38:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 12:38:16] ANSI_COLOR="0;31"
[2025-06-05 12:38:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 12:38:16] HOME_URL="https://www.centos.org/"
[2025-06-05 12:38:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 12:38:16] 
[2025-06-05 12:38:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 12:38:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 12:38:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 12:38:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 12:38:16] 
[2025-06-05 12:38:16] 2025-06-05 16:37:58,680 | INFO     | **************************************
[2025-06-05 12:38:16] 2025-06-05 16:37:59,183 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 12:38:16] 2025-06-05 16:37:59,200 | INFO     | sufficient remaining disk space (18608029696 B)
[2025-06-05 12:38:16] 2025-06-05 16:37:59,200 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 12:38:16] 2025-06-05 16:37:59,201 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 12:38:16] 2025-06-05 16:37:59,201 | INFO     | update_server=False
[2025-06-05 12:38:16] 2025-06-05 16:37:59,201 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 12:38:16] 2025-06-05 16:37:59,201 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 12:38:16] 2025-06-05 16:37:59,201 | INFO     | aborting loop
[2025-06-05 12:38:16] 2025-06-05 16:37:59,590 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 12:38:16] 2025-06-05 16:37:59,590 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 12:38:16] 2025-06-05 16:37:59,590 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 12:38:16] 2025-06-05 16:37:59,781 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 12:38:16] 2025-06-05 16:38:00,206 | INFO     | [job] retrieve thread has finished
[2025-06-05 12:38:16] 2025-06-05 16:38:00,207 | INFO     | [job] job monitor thread has finished
[2025-06-05 12:38:16] 2025-06-05 16:38:00,276 | INFO     | all data control threads have been joined
[2025-06-05 12:38:16] 2025-06-05 16:38:00,313 | INFO     | all payload control threads have been joined
[2025-06-05 12:38:16] 2025-06-05 16:38:00,504 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 12:38:16] 2025-06-05 16:38:00,576 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 12:38:16] 2025-06-05 16:38:00,584 | INFO     | [data] copytool_in thread has finished
[2025-06-05 12:38:16] 2025-06-05 16:38:00,821 | INFO     | all job control threads have been joined
[2025-06-05 12:38:16] 2025-06-05 16:38:01,233 | INFO     | [job] validate thread has finished
[2025-06-05 12:38:16] 2025-06-05 16:38:01,242 | INFO     | [payload] failed_post thread has finished
[2025-06-05 12:38:16] 2025-06-05 16:38:01,281 | INFO     | [data] control thread has finished
[2025-06-05 12:38:16] 2025-06-05 16:38:01,319 | INFO     | [payload] control thread has finished
[2025-06-05 12:38:16] 2025-06-05 16:38:01,389 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 12:38:16] 2025-06-05 16:38:01,582 | INFO     | [payload] validate_post thread has finished
[2025-06-05 12:38:16] 2025-06-05 16:38:01,786 | INFO     | [data] copytool_out thread has finished
[2025-06-05 12:38:16] 2025-06-05 16:38:01,822 | INFO     | [job] control thread has finished
[2025-06-05 12:38:16] 2025-06-05 16:38:02,137 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 12:38:16] 2025-06-05 16:38:02,359 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 12:38:16] 2025-06-05 16:38:03,142 | INFO     | [job] queue monitor thread has finished
[2025-06-05 12:38:16] 2025-06-05 16:38:06,365 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 12:38:16] 2025-06-05 16:38:09,926 | INFO     | job.realtimelogging is not enabled
[2025-06-05 12:38:16] 2025-06-05 16:38:10,931 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 12:38:16] 2025-06-05 16:38:10,945 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140053920241472)>', '<ExcThread(monitor, started 140053472847616)>']
[2025-06-05 12:38:16] 2025-06-05 16:38:11,645 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 12:38:16] 2025-06-05 16:38:11,645 | INFO     | [monitor] control thread has ended
[2025-06-05 12:38:16] 2025-06-05 16:38:15,955 | INFO     | all workflow threads have been joined
[2025-06-05 12:38:16] 2025-06-05 16:38:15,955 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 12:38:16] 2025-06-05 16:38:15,955 | INFO     | traces error code: 0
[2025-06-05 12:38:16] 2025-06-05 16:38:15,956 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 12:38:16] 2025-06-05 16:38:16,037 [wrapper] ==== pilot stdout END ====
[2025-06-05 12:38:16] 2025-06-05 16:38:16,041 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 12:38:16] 2025-06-05 16:38:16,045 [wrapper] pilotpid: 4362
[2025-06-05 12:38:16] 2025-06-05 16:38:16,049 [wrapper] Pilot exit status: 0
[2025-06-05 12:38:16] 2025-06-05 16:38:16,064 [wrapper] pandaids: 6669233850
[2025-06-05 12:38:16] 2025-06-05 16:38:16,101 [wrapper] cleanup supervisor_pilot 20725 4363
[2025-06-05 12:38:16] 2025-06-05 16:38:16,105 [wrapper] Test setup, not cleaning
[2025-06-05 12:38:16] 2025-06-05 16:38:16,109 [wrapper] apfmon messages muted
[2025-06-05 12:38:16] 2025-06-05 16:38:16,113 [wrapper] ==== wrapper stdout END ====
[2025-06-05 12:38:16] 2025-06-05 16:38:16,116 [wrapper] ==== wrapper stderr END ====
[2025-06-05 12:38:16]  *** Error codes and diagnostics ***
[2025-06-05 12:38:16]     "exeErrorCode": 0,
[2025-06-05 12:38:16]     "exeErrorDiag": "",
[2025-06-05 12:38:16]     "pilotErrorCode": 0,
[2025-06-05 12:38:16]     "pilotErrorDiag": "",
[2025-06-05 12:38:16]  *** Listing of results directory ***
[2025-06-05 12:38:16] total 418852
[2025-06-05 12:38:16] -rw-r--r-- 1 boincer umatlas    495897 May 28 23:09 pilot3.tar.gz
[2025-06-05 12:38:16] -rw-r--r-- 1 boincer umatlas      5111 May 28 23:20 queuedata.json
[2025-06-05 12:38:16] -rwx------ 1 boincer umatlas     37140 May 28 23:20 runpilot2-wrapper.sh
[2025-06-05 12:38:16] -rw-r--r-- 1 boincer umatlas       100 Jun  5 11:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 12:38:16] -rwxr-xr-x 1 boincer umatlas      7986 Jun  5 11:08 run_atlas
[2025-06-05 12:38:16] -rw-r--r-- 1 boincer umatlas       105 Jun  5 11:08 job.xml
[2025-06-05 12:38:16] -rw-r--r-- 2 boincer umatlas 223339921 Jun  5 11:08 EVNT.44871834._002047.pool.root.1
[2025-06-05 12:38:16] drwxrwx--x 2 boincer umatlas      4096 Jun  5 11:08 shared
[2025-06-05 12:38:16] -rw-r--r-- 2 boincer umatlas    508890 Jun  5 11:08 input.tar.gz
[2025-06-05 12:38:16] -rw-r--r-- 2 boincer umatlas     15093 Jun  5 11:08 start_atlas.sh
[2025-06-05 12:38:16] -rw-r--r-- 1 boincer umatlas         0 Jun  5 11:08 boinc_lockfile
[2025-06-05 12:38:16] -rw-r--r-- 1 boincer umatlas      2559 Jun  5 11:08 pandaJob.out
[2025-06-05 12:38:16] -rw------- 1 boincer umatlas    983210 Jun  5 11:09 agis_schedconf.cvmfs.json
[2025-06-05 12:38:16] -rw------- 1 boincer umatlas   1598969 Jun  5 11:09 agis_ddmendpoints.agis.ALL.json
[2025-06-05 12:38:16] drwx------ 4 boincer umatlas      4096 Jun  5 11:09 pilot3
[2025-06-05 12:38:16] -rw-r--r-- 1 boincer umatlas      5868 Jun  5 12:30 init_data.xml
[2025-06-05 12:38:16] -rw------- 1 boincer umatlas        95 Jun  5 12:37 pilot_heartbeat.json
[2025-06-05 12:38:16] -rw------- 1 boincer umatlas 199969413 Jun  5 12:37 HITS.44871837._094415.pool.root.1
[2025-06-05 12:38:16] -rw-r--r-- 1 boincer umatlas       529 Jun  5 12:37 boinc_task_state.xml
[2025-06-05 12:38:16] -rw------- 1 boincer umatlas      1047 Jun  5 12:37 memory_monitor_summary.json
[2025-06-05 12:38:16] -rw------- 1 boincer umatlas    383948 Jun  5 12:37 log.44871837._094415.job.log.tgz.1
[2025-06-05 12:38:16] -rw------- 1 boincer umatlas      7749 Jun  5 12:37 heartbeat.json
[2025-06-05 12:38:16] -rw-r--r-- 1 boincer umatlas        27 Jun  5 12:38 wrapper_checkpoint.txt
[2025-06-05 12:38:16] -rw------- 1 boincer umatlas      4425 Jun  5 12:38 pilotlog.txt
[2025-06-05 12:38:16] -rw------- 1 boincer umatlas    501374 Jun  5 12:38 log.44871837._094415.job.log.1
[2025-06-05 12:38:16] -rw------- 1 boincer umatlas       357 Jun  5 12:38 output.list
[2025-06-05 12:38:16] -rw-r--r-- 1 boincer umatlas       620 Jun  5 12:38 runtime_log
[2025-06-05 12:38:16] -rw------- 1 boincer umatlas    901120 Jun  5 12:38 result.tar.gz
[2025-06-05 12:38:16] -rw-r--r-- 1 boincer umatlas      8661 Jun  5 12:38 runtime_log.err
[2025-06-05 12:38:16] -rw------- 1 boincer umatlas       660 Jun  5 12:38 DBiNDmK0ie7n9Rq4apOajLDm4fhM0noT9bVof3QYDmhZUKDmJsmS2m.diag
[2025-06-05 12:38:16] -rw-r--r-- 1 boincer umatlas     21231 Jun  5 12:38 stderr.txt
[2025-06-05 12:38:16] -rw-r--r-- 1 boincer umatlas      8192 Jun  5 12:38 boinc_mmap_file
[2025-06-05 12:38:16] HITS file was successfully produced:
[2025-06-05 12:38:16] -rw------- 1 boincer umatlas 199969413 Jun  5 12:37 shared/HITS.pool.root.1
[2025-06-05 12:38:16]  *** Contents of shared directory: ***
[2025-06-05 12:38:16] total 414792
[2025-06-05 12:38:16] -rw-r--r-- 2 boincer umatlas 223339921 Jun  5 11:08 ATLAS.root_0
[2025-06-05 12:38:16] -rw-r--r-- 2 boincer umatlas    508890 Jun  5 11:08 input.tar.gz
[2025-06-05 12:38:16] -rw-r--r-- 2 boincer umatlas     15093 Jun  5 11:08 start_atlas.sh
[2025-06-05 12:38:16] -rw------- 1 boincer umatlas 199969413 Jun  5 12:37 HITS.pool.root.1
[2025-06-05 12:38:16] -rw------- 1 boincer umatlas    901120 Jun  5 12:38 result.tar.gz
12:38:18 (456): run_atlas exited; CPU time 58045.385108
12:38:18 (456): called boinc_finish(0)

</stderr_txt>
]]>

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