Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:01:07 (54292): wrapper (7.7.26015): starting
11:01:07 (54292): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 11:01:07] Arguments: --nthreads 8
[2025-06-05 11:01:07] Threads: 8
[2025-06-05 11:01:07] Checking for CVMFS
[2025-06-05 11:01:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 11:01:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 11:01:07] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 11:01:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 11:01:07] 2.11.2.0 5200 30375 294504 146822 2 569 15425927 18432000 19967 130560 0 157483931 99.547 136076725 42180 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-05 11:01:07] CVMFS is ok
[2025-06-05 11:01:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 11:01:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 11:01:07] Further information can be found at the LHC@home message board.
[2025-06-05 11:01:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 11:01:07] Checking for apptainer binary...
[2025-06-05 11:01:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 11:01:07] Running /usr/bin/apptainer --version
[2025-06-05 11:01:07] apptainer version 1.3.2-1.el7
[2025-06-05 11:01:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 11:01:10] c-212-5.aglt2.org
[2025-06-05 11:01:10] apptainer works
[2025-06-05 11:01:10] Set ATHENA_PROC_NUMBER=8
[2025-06-05 11:01:10] Set ATHENA_CORE_NUMBER=8
[2025-06-05 11:01:10] Starting ATLAS job with PandaID=6668313141
[2025-06-05 11:01:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 14:57:34]  *** The last 200 lines of the pilot log: ***
[2025-06-05 14:57:34] 2025-06-05 18:57:20,129 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6668313141/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 14:57:34] 2025-06-05 18:57:20,130 | INFO     | extracted standard info from prmon json
[2025-06-05 14:57:34] 2025-06-05 18:57:20,130 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 14:57:34] 2025-06-05 18:57:20,130 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 14:57:34] 2025-06-05 18:57:20,130 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 14:57:34] 2025-06-05 18:57:20,130 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 14:57:34] 2025-06-05 18:57:20,132 | INFO     | fitting pss+swap vs Time
[2025-06-05 14:57:34] 2025-06-05 18:57:20,133 | INFO     | sum of square deviations: 3872010201.8922343
[2025-06-05 14:57:34] 2025-06-05 18:57:20,133 | INFO     | sum of deviations: 22077712457.827576
[2025-06-05 14:57:34] 2025-06-05 18:57:20,133 | INFO     | mean x: 1749142756.5215516
[2025-06-05 14:57:34] 2025-06-05 18:57:20,133 | INFO     | mean y: 2456775.0344827585
[2025-06-05 14:57:34] 2025-06-05 18:57:20,133 | INFO     | -- intersect: -9970933999.42751
[2025-06-05 14:57:34] 2025-06-05 18:57:20,133 | INFO     | intersect: -9970933999.42751
[2025-06-05 14:57:34] 2025-06-05 18:57:20,134 | INFO     | chi2: 2.234969051315856
[2025-06-05 14:57:34] 2025-06-05 18:57:20,134 | INFO     | sum of square deviations: 3627021086.889859
[2025-06-05 14:57:34] 2025-06-05 18:57:20,134 | INFO     | sum of deviations: 36773233445.96033
[2025-06-05 14:57:34] 2025-06-05 18:57:20,135 | INFO     | mean x: 1749142604.0220265
[2025-06-05 14:57:34] 2025-06-05 18:57:20,135 | INFO     | mean y: 2465752.607929515
[2025-06-05 14:57:34] 2025-06-05 18:57:20,135 | INFO     | -- intersect: -17731544545.945972
[2025-06-05 14:57:34] 2025-06-05 18:57:20,135 | INFO     | intersect: -17731544545.945972
[2025-06-05 14:57:34] 2025-06-05 18:57:20,135 | INFO     | chi2: 1.427951549244396
[2025-06-05 14:57:34] 2025-06-05 18:57:20,135 | INFO     | current chi2=1.427951549244396 (change=36.10866564780045 %)
[2025-06-05 14:57:34] 2025-06-05 18:57:20,135 | INFO     | sum of square deviations: 3392590309.3874044
[2025-06-05 14:57:34] 2025-06-05 18:57:20,136 | INFO     | sum of deviations: 35663695150.13514
[2025-06-05 14:57:34] 2025-06-05 18:57:20,136 | INFO     | mean x: 1749142451.5225224
[2025-06-05 14:57:34] 2025-06-05 18:57:20,136 | INFO     | mean y: 2465031.472972973
[2025-06-05 14:57:34] 2025-06-05 18:57:20,136 | INFO     | -- intersect: -18384925568.756413
[2025-06-05 14:57:34] 2025-06-05 18:57:20,136 | INFO     | intersect: -18384925568.756413
[2025-06-05 14:57:34] 2025-06-05 18:57:20,136 | INFO     | chi2: 1.4286034291099305
[2025-06-05 14:57:34] 2025-06-05 18:57:20,136 | INFO     | current chi2=1.4286034291099305 (change=-0.04565139943855617 %)
[2025-06-05 14:57:34] 2025-06-05 18:57:20,136 | INFO     | right removable region: 221
[2025-06-05 14:57:34] 2025-06-05 18:57:20,136 | INFO     | sum of square deviations: 3627018036.889859
[2025-06-05 14:57:34] 2025-06-05 18:57:20,137 | INFO     | sum of deviations: -12841718796.60793
[2025-06-05 14:57:34] 2025-06-05 18:57:20,137 | INFO     | mean x: 1749142909.0220265
[2025-06-05 14:57:34] 2025-06-05 18:57:20,137 | INFO     | mean y: 2478304.321585903
[2025-06-05 14:57:34] 2025-06-05 18:57:20,138 | INFO     | -- intersect: 6195444852.6772785
[2025-06-05 14:57:34] 2025-06-05 18:57:20,138 | INFO     | intersect: 6195444852.6772785
[2025-06-05 14:57:34] 2025-06-05 18:57:20,138 | INFO     | chi2: 0.830541656540525
[2025-06-05 14:57:34] 2025-06-05 18:57:20,138 | INFO     | current chi2=0.830541656540525 (change=62.83878490167294 %)
[2025-06-05 14:57:34] 2025-06-05 18:57:20,138 | INFO     | sum of square deviations: 3392584209.3874044
[2025-06-05 14:57:34] 2025-06-05 18:57:20,139 | INFO     | sum of deviations: -11557910361.117117
[2025-06-05 14:57:34] 2025-06-05 18:57:20,139 | INFO     | mean x: 1749143061.5225224
[2025-06-05 14:57:34] 2025-06-05 18:57:20,139 | INFO     | mean y: 2477463.4234234234
[2025-06-05 14:57:34] 2025-06-05 18:57:20,139 | INFO     | -- intersect: 5961486132.363064
[2025-06-05 14:57:34] 2025-06-05 18:57:20,140 | INFO     | intersect: 5961486132.363064
[2025-06-05 14:57:34] 2025-06-05 18:57:20,140 | INFO     | chi2: 0.8296453679299901
[2025-06-05 14:57:34] 2025-06-05 18:57:20,140 | INFO     | current chi2=0.8296453679299901 (change=0.10791615369038268 %)
[2025-06-05 14:57:34] 2025-06-05 18:57:20,140 | INFO     | left removable region: 20
[2025-06-05 14:57:34] 2025-06-05 18:57:20,140 | INFO     | sum of square deviations: 2518017418.87561
[2025-06-05 14:57:34] 2025-06-05 18:57:20,141 | INFO     | sum of deviations: 3493708644.8059683
[2025-06-05 14:57:34] 2025-06-05 18:57:20,141 | INFO     | mean x: 1749143031.0248756
[2025-06-05 14:57:34] 2025-06-05 18:57:20,141 | INFO     | mean y: 2486582.23880597
[2025-06-05 14:57:34] 2025-06-05 18:57:20,141 | INFO     | -- intersect: -2424421223.356325
[2025-06-05 14:57:34] 2025-06-05 18:57:20,141 | INFO     | intersect: -2424421223.356325
[2025-06-05 14:57:34] 2025-06-05 18:57:20,141 | INFO     | chi2: 0.00012336070738752829
[2025-06-05 14:57:34] 2025-06-05 18:57:20,142 | INFO     | -- intersect: -2424421223.356325
[2025-06-05 14:57:34] 2025-06-05 18:57:20,142 | INFO     | current memory leak: 1.39 B/s (using 201 data points, chi2=0.00)
[2025-06-05 14:57:34] 2025-06-05 18:57:20,142 | INFO     | ..............................
[2025-06-05 14:57:34] 2025-06-05 18:57:20,142 | INFO     | . Timing measurements:
[2025-06-05 14:57:34] 2025-06-05 18:57:20,142 | INFO     | . get job = 0 s
[2025-06-05 14:57:34] 2025-06-05 18:57:20,143 | INFO     | . initial setup = 2 s
[2025-06-05 14:57:34] 2025-06-05 18:57:20,143 | INFO     | . payload setup = 8 s
[2025-06-05 14:57:34] 2025-06-05 18:57:20,143 | INFO     | . stage-in = 0 s
[2025-06-05 14:57:34] 2025-06-05 18:57:20,143 | INFO     | . payload execution = 14110 s
[2025-06-05 14:57:34] 2025-06-05 18:57:20,143 | INFO     | . stage-out = 2 s
[2025-06-05 14:57:34] 2025-06-05 18:57:20,143 | INFO     | . log creation = 0 s
[2025-06-05 14:57:34] 2025-06-05 18:57:20,143 | INFO     | ..............................
[2025-06-05 14:57:34] 2025-06-05 18:57:20,215 | INFO     | 
[2025-06-05 14:57:34] 2025-06-05 18:57:20,215 | INFO     | job summary report
[2025-06-05 14:57:34] 2025-06-05 18:57:20,215 | INFO     | --------------------------------------------------
[2025-06-05 14:57:34] 2025-06-05 18:57:20,216 | INFO     | PanDA job id: 6668313141
[2025-06-05 14:57:34] 2025-06-05 18:57:20,216 | INFO     | task id: 44871837
[2025-06-05 14:57:34] 2025-06-05 18:57:20,216 | INFO     | errors: (none)
[2025-06-05 14:57:34] 2025-06-05 18:57:20,216 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 14:57:34] 2025-06-05 18:57:20,216 | INFO     | pilot state: finished 
[2025-06-05 14:57:34] 2025-06-05 18:57:20,216 | INFO     | transexitcode: 0
[2025-06-05 14:57:34] 2025-06-05 18:57:20,216 | INFO     | exeerrorcode: 0
[2025-06-05 14:57:34] 2025-06-05 18:57:20,216 | INFO     | exeerrordiag: 
[2025-06-05 14:57:34] 2025-06-05 18:57:20,216 | INFO     | exitcode: 0
[2025-06-05 14:57:34] 2025-06-05 18:57:20,216 | INFO     | exitmsg: OK
[2025-06-05 14:57:34] 2025-06-05 18:57:20,216 | INFO     | cpuconsumptiontime: 45582 s
[2025-06-05 14:57:34] 2025-06-05 18:57:20,216 | INFO     | nevents: 400
[2025-06-05 14:57:34] 2025-06-05 18:57:20,216 | INFO     | neventsw: 0
[2025-06-05 14:57:34] 2025-06-05 18:57:20,216 | INFO     | pid: 80331
[2025-06-05 14:57:34] 2025-06-05 18:57:20,217 | INFO     | pgrp: 80331
[2025-06-05 14:57:34] 2025-06-05 18:57:20,217 | INFO     | corecount: 8
[2025-06-05 14:57:34] 2025-06-05 18:57:20,217 | INFO     | event service: False
[2025-06-05 14:57:34] 2025-06-05 18:57:20,217 | INFO     | sizes: {0: 2397392, 4: 2397598, 11: 2397626, 14123: 2428206, 14126: 2437147, 14129: 2437203, 14144: 2437501}
[2025-06-05 14:57:34] 2025-06-05 18:57:20,217 | INFO     | --------------------------------------------------
[2025-06-05 14:57:34] 2025-06-05 18:57:20,217 | INFO     | 
[2025-06-05 14:57:34] 2025-06-05 18:57:20,217 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 14:57:34] 2025-06-05 18:57:20,238 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 14:57:34] 2025-06-05 18:57:20,238 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 14:57:34] 2025-06-05 18:57:20,238 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 14:57:34] 2025-06-05 18:57:20,238 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 14:57:34] 2025-06-05 18:57:20,238 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 14:57:34] 2025-06-05 18:57:20,238 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 14:57:34] 2025-06-05 18:57:20,239 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 14:57:34] 2025-06-05 18:57:20,239 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 14:57:34] 2025-06-05 18:57:20,239 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 14:57:34] 2025-06-05 18:57:20,239 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 14:57:34] 2025-06-05 18:57:20,239 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 14:57:34] 2025-06-05 18:57:20,239 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 14:57:34] 2025-06-05 18:57:20,239 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 14:57:34] 2025-06-05 18:57:20,239 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 14:57:34] 2025-06-05 18:57:20,239 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 14:57:34] 2025-06-05 18:57:20,239 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 14:57:34] 2025-06-05 18:57:20,239 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 14:57:34] 2025-06-05 18:57:20,239 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 14:57:34] 2025-06-05 18:57:20,239 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 14:57:34] 2025-06-05 18:57:20,239 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 14:57:34] 2025-06-05 18:57:20,240 | INFO     | job 6668313141 has completed (purged errors)
[2025-06-05 14:57:34] 2025-06-05 18:57:20,240 | INFO     | overall cleanup function is called
[2025-06-05 14:57:34] 2025-06-05 18:57:21,242 | INFO     | --- collectZombieJob: --- 10, [80331]
[2025-06-05 14:57:34] 2025-06-05 18:57:21,242 | INFO     | zombie collector waiting for pid 80331
[2025-06-05 14:57:34] 2025-06-05 18:57:21,243 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 14:57:34] 2025-06-05 18:57:21,243 | INFO     | collected zombie processes
[2025-06-05 14:57:34] 2025-06-05 18:57:21,243 | INFO     | will attempt to kill all subprocesses of pid=80331
[2025-06-05 14:57:34] 2025-06-05 18:57:21,490 | INFO     | process IDs to be killed: [80331] (in reverse order)
[2025-06-05 14:57:34] 2025-06-05 18:57:21,583 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 14:57:34] 2025-06-05 18:57:21,584 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 14:57:34] 2025-06-05 18:57:21,594 | INFO     | did not find any defunct processes belonging to 80331
[2025-06-05 14:57:34] 2025-06-05 18:57:21,604 | INFO     | did not find any defunct processes belonging to 80331
[2025-06-05 14:57:34] 2025-06-05 18:57:21,604 | INFO     | ready for new job
[2025-06-05 14:57:34] 2025-06-05 18:57:21,604 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 14:57:34] 2025-06-05 18:57:21,606 | INFO     | **************************************
[2025-06-05 14:57:34] 2025-06-05 18:57:21,606 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 14:57:34] 2025-06-05 18:57:21,606 | INFO     | **************************************
[2025-06-05 14:57:34] 2025-06-05 18:57:21,606 | INFO     | 
[2025-06-05 14:57:34] 2025-06-05 18:57:21,610 | INFO     | architecture information:
[2025-06-05 14:57:34] 2025-06-05 18:57:21,611 | INFO     | executing command: cat /etc/os-release
[2025-06-05 14:57:34] 2025-06-05 18:57:21,725 | INFO     | cat /etc/os-release:
[2025-06-05 14:57:34] NAME="CentOS Linux"
[2025-06-05 14:57:34] VERSION="7 (Core)"
[2025-06-05 14:57:34] ID="centos"
[2025-06-05 14:57:34] ID_LIKE="rhel fedora"
[2025-06-05 14:57:34] VERSION_ID="7"
[2025-06-05 14:57:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 14:57:34] ANSI_COLOR="0;31"
[2025-06-05 14:57:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 14:57:34] HOME_URL="https://www.centos.org/"
[2025-06-05 14:57:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 14:57:34] 
[2025-06-05 14:57:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 14:57:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 14:57:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 14:57:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 14:57:34] 
[2025-06-05 14:57:34] 2025-06-05 18:57:21,725 | INFO     | **************************************
[2025-06-05 14:57:34] 2025-06-05 18:57:22,228 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 14:57:34] 2025-06-05 18:57:22,245 | INFO     | sufficient remaining disk space (104976089088 B)
[2025-06-05 14:57:34] 2025-06-05 18:57:22,245 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 14:57:34] 2025-06-05 18:57:22,245 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 14:57:34] 2025-06-05 18:57:22,245 | INFO     | update_server=False
[2025-06-05 14:57:34] 2025-06-05 18:57:22,246 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 14:57:34] 2025-06-05 18:57:22,246 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 14:57:34] 2025-06-05 18:57:22,246 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 14:57:34] 2025-06-05 18:57:22,246 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 14:57:34] 2025-06-05 18:57:22,246 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 14:57:34] 2025-06-05 18:57:22,246 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 14:57:34] 2025-06-05 18:57:22,246 | INFO     | aborting loop
[2025-06-05 14:57:34] 2025-06-05 18:57:22,484 | INFO     | all data control threads have been joined
[2025-06-05 14:57:34] 2025-06-05 18:57:22,724 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 14:57:34] 2025-06-05 18:57:22,732 | INFO     | all job control threads have been joined
[2025-06-05 14:57:34] 2025-06-05 18:57:22,887 | INFO     | all payload control threads have been joined
[2025-06-05 14:57:34] 2025-06-05 18:57:23,248 | INFO     | [job] retrieve thread has finished
[2025-06-05 14:57:34] 2025-06-05 18:57:23,249 | INFO     | [job] job monitor thread has finished
[2025-06-05 14:57:34] 2025-06-05 18:57:23,485 | INFO     | [data] control thread has finished
[2025-06-05 14:57:34] 2025-06-05 18:57:23,579 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 14:57:34] 2025-06-05 18:57:23,738 | INFO     | [job] control thread has finished
[2025-06-05 14:57:34] 2025-06-05 18:57:23,893 | INFO     | [payload] control thread has finished
[2025-06-05 14:57:34] 2025-06-05 18:57:24,039 | INFO     | [payload] failed_post thread has finished
[2025-06-05 14:57:34] 2025-06-05 18:57:24,133 | INFO     | [payload] validate_post thread has finished
[2025-06-05 14:57:34] 2025-06-05 18:57:24,207 | INFO     | [job] validate thread has finished
[2025-06-05 14:57:34] 2025-06-05 18:57:24,430 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 14:57:34] 2025-06-05 18:57:24,500 | INFO     | [data] copytool_in thread has finished
[2025-06-05 14:57:34] 2025-06-05 18:57:24,622 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 14:57:34] 2025-06-05 18:57:24,728 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 14:57:34] 2025-06-05 18:57:24,730 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 14:57:34] 2025-06-05 18:57:24,733 | INFO     | [data] copytool_out thread has finished
[2025-06-05 14:57:34] 2025-06-05 18:57:25,228 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 14:57:34] 2025-06-05 18:57:26,234 | INFO     | [job] queue monitor thread has finished
[2025-06-05 14:57:34] 2025-06-05 18:57:28,439 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 14:57:34] 2025-06-05 18:57:28,872 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139878562043712)>', '<ExcThread(monitor, started 139878117385984)>']
[2025-06-05 14:57:34] 2025-06-05 18:57:29,276 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 14:57:34] 2025-06-05 18:57:29,276 | INFO     | [monitor] control thread has ended
[2025-06-05 14:57:34] 2025-06-05 18:57:33,898 | INFO     | all workflow threads have been joined
[2025-06-05 14:57:34] 2025-06-05 18:57:33,898 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 14:57:34] 2025-06-05 18:57:33,899 | INFO     | traces error code: 0
[2025-06-05 14:57:34] 2025-06-05 18:57:33,899 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 14:57:34] 2025-06-05 18:57:34,047 [wrapper] ==== pilot stdout END ====
[2025-06-05 14:57:34] 2025-06-05 18:57:34,052 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 14:57:34] 2025-06-05 18:57:34,055 [wrapper] pilotpid: 59158
[2025-06-05 14:57:34] 2025-06-05 18:57:34,057 [wrapper] Pilot exit status: 0
[2025-06-05 14:57:34] 2025-06-05 18:57:34,066 [wrapper] pandaids: 6668313141
[2025-06-05 14:57:34] 2025-06-05 18:57:34,131 [wrapper] cleanup supervisor_pilot  1492 59159
[2025-06-05 14:57:34] 2025-06-05 18:57:34,133 [wrapper] Test setup, not cleaning
[2025-06-05 14:57:34] 2025-06-05 18:57:34,135 [wrapper] apfmon messages muted
[2025-06-05 14:57:34] 2025-06-05 18:57:34,137 [wrapper] ==== wrapper stdout END ====
[2025-06-05 14:57:34] 2025-06-05 18:57:34,139 [wrapper] ==== wrapper stderr END ====
[2025-06-05 14:57:34]  *** Error codes and diagnostics ***
[2025-06-05 14:57:34]     "exeErrorCode": 0,
[2025-06-05 14:57:34]     "exeErrorDiag": "",
[2025-06-05 14:57:34]     "pilotErrorCode": 0,
[2025-06-05 14:57:34]     "pilotErrorDiag": "",
[2025-06-05 14:57:34]  *** Listing of results directory ***
[2025-06-05 14:57:34] total 419268
[2025-06-05 14:57:34] -rw-r--r-- 1 boincer umatlas    495897 May 28 05:38 pilot3.tar.gz
[2025-06-05 14:57:34] -rw-r--r-- 1 boincer umatlas      5111 May 28 05:40 queuedata.json
[2025-06-05 14:57:34] -rwx------ 1 boincer umatlas     37140 May 28 05:41 runpilot2-wrapper.sh
[2025-06-05 14:57:34] -rw-r--r-- 1 boincer umatlas       100 Jun  5 11:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 14:57:34] -rwxr-xr-x 1 boincer umatlas      7986 Jun  5 11:01 run_atlas
[2025-06-05 14:57:34] -rw-r--r-- 1 boincer umatlas       105 Jun  5 11:01 job.xml
[2025-06-05 14:57:34] -rw-r--r-- 2 boincer umatlas    508874 Jun  5 11:01 input.tar.gz
[2025-06-05 14:57:34] -rw-r--r-- 2 boincer umatlas 224785814 Jun  5 11:01 EVNT.44871834._003209.pool.root.1
[2025-06-05 14:57:34] -rw-r--r-- 2 boincer umatlas     15093 Jun  5 11:01 start_atlas.sh
[2025-06-05 14:57:34] drwxrwx--x 2 boincer umatlas      4096 Jun  5 11:01 shared
[2025-06-05 14:57:34] -rw-r--r-- 1 boincer umatlas         0 Jun  5 11:01 boinc_lockfile
[2025-06-05 14:57:34] -rw-r--r-- 1 boincer umatlas      2559 Jun  5 11:01 pandaJob.out
[2025-06-05 14:57:34] -rw------- 1 boincer umatlas    983210 Jun  5 11:01 agis_schedconf.cvmfs.json
[2025-06-05 14:57:34] drwx------ 4 boincer umatlas      4096 Jun  5 11:01 pilot3
[2025-06-05 14:57:34] -rw-r--r-- 1 boincer umatlas      6387 Jun  5 14:55 init_data.xml
[2025-06-05 14:57:34] -rw------- 1 boincer umatlas 197448919 Jun  5 14:56 HITS.44871837._082231.pool.root.1
[2025-06-05 14:57:34] -rw-r--r-- 1 boincer umatlas       531 Jun  5 14:56 boinc_task_state.xml
[2025-06-05 14:57:34] -rw------- 1 boincer umatlas        95 Jun  5 14:56 pilot_heartbeat.json
[2025-06-05 14:57:34] -rw------- 1 boincer umatlas      1077 Jun  5 14:56 memory_monitor_summary.json
[2025-06-05 14:57:34] -rw------- 1 boincer umatlas   1598969 Jun  5 14:57 agis_ddmendpoints.agis.ALL.json
[2025-06-05 14:57:34] -rw------- 1 boincer umatlas    407432 Jun  5 14:57 log.44871837._082231.job.log.tgz.1
[2025-06-05 14:57:34] -rw------- 1 boincer umatlas      7746 Jun  5 14:57 heartbeat.json
[2025-06-05 14:57:34] -rw-r--r-- 1 boincer umatlas      8192 Jun  5 14:57 boinc_mmap_file
[2025-06-05 14:57:34] -rw-r--r-- 1 boincer umatlas        28 Jun  5 14:57 wrapper_checkpoint.txt
[2025-06-05 14:57:34] -rw------- 1 boincer umatlas      4477 Jun  5 14:57 pilotlog.txt
[2025-06-05 14:57:34] -rw------- 1 boincer umatlas   1222620 Jun  5 14:57 log.44871837._082231.job.log.1
[2025-06-05 14:57:34] -rw------- 1 boincer umatlas       357 Jun  5 14:57 output.list
[2025-06-05 14:57:34] -rw-r--r-- 1 boincer umatlas       620 Jun  5 14:57 runtime_log
[2025-06-05 14:57:34] -rw------- 1 boincer umatlas   1648640 Jun  5 14:57 result.tar.gz
[2025-06-05 14:57:34] -rw------- 1 boincer umatlas       662 Jun  5 14:57 WINKDmHTSe7n9Rq4apOajLDm4fhM0noT9bVof3QYDmaHTKDmqBK1Dm.diag
[2025-06-05 14:57:34] -rw-r--r-- 1 boincer umatlas      8655 Jun  5 14:57 runtime_log.err
[2025-06-05 14:57:34] -rw-r--r-- 1 boincer umatlas     20913 Jun  5 14:57 stderr.txt
[2025-06-05 14:57:34] HITS file was successfully produced:
[2025-06-05 14:57:34] -rw------- 1 boincer umatlas 197448919 Jun  5 14:56 shared/HITS.pool.root.1
[2025-06-05 14:57:34]  *** Contents of shared directory: ***
[2025-06-05 14:57:34] total 414480
[2025-06-05 14:57:34] -rw-r--r-- 2 boincer umatlas    508874 Jun  5 11:01 input.tar.gz
[2025-06-05 14:57:34] -rw-r--r-- 2 boincer umatlas 224785814 Jun  5 11:01 ATLAS.root_0
[2025-06-05 14:57:34] -rw-r--r-- 2 boincer umatlas     15093 Jun  5 11:01 start_atlas.sh
[2025-06-05 14:57:34] -rw------- 1 boincer umatlas 197448919 Jun  5 14:56 HITS.pool.root.1
[2025-06-05 14:57:34] -rw------- 1 boincer umatlas   1648640 Jun  5 14:57 result.tar.gz
14:57:35 (54292): run_atlas exited; CPU time 45103.379136
14:57:35 (54292): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN