Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:54:44 (10111): wrapper (7.7.26015): starting
16:54:44 (10111): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 16:54:44] Arguments: --nthreads 8
[2025-06-05 16:54:44] Threads: 8
[2025-06-05 16:54:44] Checking for CVMFS
[2025-06-05 16:54:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 16:54:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 16:54:45] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 16:54:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 16:54:46] 2.11.2.0 18967 34890 95288 146822 3 16 24922748 25165825 3522 130560 0 17827278 99.821 19276170 2468 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 16:54:46] CVMFS is ok
[2025-06-05 16:54:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 16:54:46] Checking for apptainer binary...
[2025-06-05 16:54:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 16:54:46] Running /usr/bin/apptainer --version
[2025-06-05 16:54:46] apptainer version 1.3.2-1.el7
[2025-06-05 16:54:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 16:55:00] cg-vwn474.simple-grid.lan
[2025-06-05 16:55:00] apptainer works
[2025-06-05 16:55:00] Set ATHENA_PROC_NUMBER=8
[2025-06-05 16:55:00] Set ATHENA_CORE_NUMBER=8
[2025-06-05 16:55:00] Starting ATLAS job with PandaID=6668233166
[2025-06-05 16:55:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 22:02:31]  *** The last 200 lines of the pilot log: ***
[2025-06-05 22:02:31] 2025-06-05 19:53:56,133 | INFO     | extracted standard info from prmon json
[2025-06-05 22:02:31] 2025-06-05 19:53:56,133 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 22:02:31] 2025-06-05 19:53:56,133 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 22:02:31] 2025-06-05 19:53:56,134 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 22:02:31] 2025-06-05 19:53:56,134 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 22:02:31] 2025-06-05 19:53:56,139 | INFO     | fitting pss+swap vs Time
[2025-06-05 22:02:31] 2025-06-05 19:53:56,140 | INFO     | sum of square deviations: 6880054580.0
[2025-06-05 22:02:31] 2025-06-05 19:53:56,142 | INFO     | sum of deviations: 165121502801.99997
[2025-06-05 22:02:31] 2025-06-05 19:53:56,142 | INFO     | mean x: 1749144548.0
[2025-06-05 22:02:31] 2025-06-05 19:53:56,143 | INFO     | mean y: 2420073.587188612
[2025-06-05 22:02:31] 2025-06-05 19:53:56,143 | INFO     | -- intersect: -41977098115.596275
[2025-06-05 22:02:31] 2025-06-05 19:53:56,143 | INFO     | intersect: -41977098115.596275
[2025-06-05 22:02:31] 2025-06-05 19:53:56,143 | INFO     | chi2: 7.478691235153649
[2025-06-05 22:02:31] 2025-06-05 19:53:56,144 | INFO     | sum of square deviations: 6519285025.0
[2025-06-05 22:02:31] 2025-06-05 19:53:56,146 | INFO     | sum of deviations: 180503468524.49997
[2025-06-05 22:02:31] 2025-06-05 19:53:56,146 | INFO     | mean x: 1749144395.5
[2025-06-05 22:02:31] 2025-06-05 19:53:56,146 | INFO     | mean y: 2426461.4239130435
[2025-06-05 22:02:31] 2025-06-05 19:53:56,146 | INFO     | -- intersect: -48427214078.481735
[2025-06-05 22:02:31] 2025-06-05 19:53:56,146 | INFO     | intersect: -48427214078.481735
[2025-06-05 22:02:31] 2025-06-05 19:53:56,147 | INFO     | chi2: 6.745566534732568
[2025-06-05 22:02:31] 2025-06-05 19:53:56,147 | INFO     | current chi2=6.745566534732568 (change=9.802847548713103 %)
[2025-06-05 22:02:31] 2025-06-05 19:53:56,147 | INFO     | right removable region: 275
[2025-06-05 22:02:31] 2025-06-05 19:53:56,148 | INFO     | sum of square deviations: 6519285025.0
[2025-06-05 22:02:31] 2025-06-05 19:53:56,150 | INFO     | sum of deviations: 68845020320.49997
[2025-06-05 22:02:31] 2025-06-05 19:53:56,150 | INFO     | mean x: 1749144700.5
[2025-06-05 22:02:31] 2025-06-05 19:53:56,150 | INFO     | mean y: 2460740.7065217393
[2025-06-05 22:02:31] 2025-06-05 19:53:56,150 | INFO     | -- intersect: -18468874994.367794
[2025-06-05 22:02:31] 2025-06-05 19:53:56,150 | INFO     | intersect: -18468874994.367794
[2025-06-05 22:02:31] 2025-06-05 19:53:56,150 | INFO     | chi2: 2.740028789792779
[2025-06-05 22:02:31] 2025-06-05 19:53:56,151 | INFO     | current chi2=2.740028789792779 (change=63.36218860175359 %)
[2025-06-05 22:02:31] 2025-06-05 19:53:56,151 | INFO     | sum of square deviations: 6171352920.0
[2025-06-05 22:02:31] 2025-06-05 19:53:56,153 | INFO     | sum of deviations: 8581304014.999996
[2025-06-05 22:02:31] 2025-06-05 19:53:56,153 | INFO     | mean x: 1749144853.0
[2025-06-05 22:02:31] 2025-06-05 19:53:56,153 | INFO     | mean y: 2487092.745387454
[2025-06-05 22:02:31] 2025-06-05 19:53:56,153 | INFO     | -- intersect: -2429709533.2523813
[2025-06-05 22:02:31] 2025-06-05 19:53:56,154 | INFO     | intersect: -2429709533.2523813
[2025-06-05 22:02:31] 2025-06-05 19:53:56,154 | INFO     | chi2: 0.920714115754886
[2025-06-05 22:02:31] 2025-06-05 19:53:56,154 | INFO     | current chi2=0.920714115754886 (change=66.3976481128683 %)
[2025-06-05 22:02:31] 2025-06-05 19:53:56,154 | INFO     | sum of square deviations: 5836025702.5
[2025-06-05 22:02:31] 2025-06-05 19:53:56,156 | INFO     | sum of deviations: -7454824792.500004
[2025-06-05 22:02:31] 2025-06-05 19:53:56,157 | INFO     | mean x: 1749145005.5
[2025-06-05 22:02:31] 2025-06-05 19:53:56,157 | INFO     | mean y: 2494378.439849624
[2025-06-05 22:02:31] 2025-06-05 19:53:56,157 | INFO     | -- intersect: 2236817909.107843
[2025-06-05 22:02:31] 2025-06-05 19:53:56,157 | INFO     | intersect: 2236817909.107843
[2025-06-05 22:02:31] 2025-06-05 19:53:56,157 | INFO     | chi2: 0.7984763143488893
[2025-06-05 22:02:31] 2025-06-05 19:53:56,157 | INFO     | current chi2=0.7984763143488893 (change=13.276412223328945 %)
[2025-06-05 22:02:31] 2025-06-05 19:53:56,157 | INFO     | left removable region: 30
[2025-06-05 22:02:31] 2025-06-05 19:53:56,158 | INFO     | sum of square deviations: 4560048290.0
[2025-06-05 22:02:31] 2025-06-05 19:53:56,160 | INFO     | sum of deviations: 8663230492.0
[2025-06-05 22:02:31] 2025-06-05 19:53:56,160 | INFO     | mean x: 1749145280.0
[2025-06-05 22:02:31] 2025-06-05 19:53:56,160 | INFO     | mean y: 2503188.326530612
[2025-06-05 22:02:31] 2025-06-05 19:53:56,160 | INFO     | -- intersect: -3320542481.5766444
[2025-06-05 22:02:31] 2025-06-05 19:53:56,160 | INFO     | intersect: -3320542481.5766444
[2025-06-05 22:02:31] 2025-06-05 19:53:56,160 | INFO     | chi2: 0.002095341557450463
[2025-06-05 22:02:31] 2025-06-05 19:53:56,161 | INFO     | -- intersect: -3320542481.5766444
[2025-06-05 22:02:31] 2025-06-05 19:53:56,161 | INFO     | current memory leak: 1.90 B/s (using 245 data points, chi2=0.00)
[2025-06-05 22:02:31] 2025-06-05 19:53:56,162 | INFO     | ..............................
[2025-06-05 22:02:31] 2025-06-05 19:53:56,162 | INFO     | . Timing measurements:
[2025-06-05 22:02:31] 2025-06-05 19:53:56,162 | INFO     | . get job = 0 s
[2025-06-05 22:02:31] 2025-06-05 19:53:56,162 | INFO     | . initial setup = 10 s
[2025-06-05 22:02:31] 2025-06-05 19:53:56,162 | INFO     | . payload setup = 175 s
[2025-06-05 22:02:31] 2025-06-05 19:53:56,162 | INFO     | . stage-in = 0 s
[2025-06-05 22:02:31] 2025-06-05 19:53:56,162 | INFO     | . payload execution = 17289 s
[2025-06-05 22:02:31] 2025-06-05 19:53:56,162 | INFO     | . stage-out = 5 s
[2025-06-05 22:02:31] 2025-06-05 19:53:56,162 | INFO     | . log creation = 1 s
[2025-06-05 22:02:31] 2025-06-05 19:53:56,162 | INFO     | ..............................
[2025-06-05 22:02:31] 2025-06-05 19:53:56,421 | INFO     | 
[2025-06-05 22:02:31] 2025-06-05 19:53:56,422 | INFO     | job summary report
[2025-06-05 22:02:31] 2025-06-05 19:53:56,422 | INFO     | --------------------------------------------------
[2025-06-05 22:02:31] 2025-06-05 19:53:56,422 | INFO     | PanDA job id: 6668233166
[2025-06-05 22:02:31] 2025-06-05 19:53:56,422 | INFO     | task id: 44871837
[2025-06-05 22:02:31] 2025-06-05 19:53:56,422 | INFO     | errors: (none)
[2025-06-05 22:02:31] 2025-06-05 19:53:56,422 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 22:02:31] 2025-06-05 19:53:56,422 | INFO     | pilot state: finished 
[2025-06-05 22:02:31] 2025-06-05 19:53:56,422 | INFO     | transexitcode: 0
[2025-06-05 22:02:31] 2025-06-05 19:53:56,422 | INFO     | exeerrorcode: 0
[2025-06-05 22:02:31] 2025-06-05 19:53:56,422 | INFO     | exeerrordiag: 
[2025-06-05 22:02:31] 2025-06-05 19:53:56,422 | INFO     | exitcode: 0
[2025-06-05 22:02:31] 2025-06-05 19:53:56,423 | INFO     | exitmsg: OK
[2025-06-05 22:02:31] 2025-06-05 19:53:56,423 | INFO     | cpuconsumptiontime: 64653 s
[2025-06-05 22:02:31] 2025-06-05 19:53:56,423 | INFO     | nevents: 400
[2025-06-05 22:02:31] 2025-06-05 19:53:56,423 | INFO     | neventsw: 0
[2025-06-05 22:02:31] 2025-06-05 19:53:56,423 | INFO     | pid: 32022
[2025-06-05 22:02:31] 2025-06-05 19:53:56,423 | INFO     | pgrp: 32022
[2025-06-05 22:02:31] 2025-06-05 19:53:56,423 | INFO     | corecount: 8
[2025-06-05 22:02:31] 2025-06-05 19:53:56,423 | INFO     | event service: False
[2025-06-05 22:02:31] 2025-06-05 19:53:56,423 | INFO     | sizes: {0: 2397165, 1: 2397420, 2: 2397420, 12: 2397448, 23: 2397476, 34: 2397504, 45: 2397660, 55: 2397688, 66: 2397716, 77: 2397744, 87: 2397800, 89: 2398314, 98
[2025-06-05 22:02:31] 2025-06-05 19:53:56,423 | INFO     | --------------------------------------------------
[2025-06-05 22:02:31] 2025-06-05 19:53:56,423 | INFO     | 
[2025-06-05 22:02:31] 2025-06-05 19:53:56,424 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-06-05 22:02:31] 2025-06-05 19:53:56,784 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 22:02:31] 2025-06-05 19:53:56,784 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 22:02:31] 2025-06-05 19:53:56,784 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 22:02:31] 2025-06-05 19:53:56,784 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 22:02:31] 2025-06-05 19:53:56,784 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 22:02:31] 2025-06-05 19:53:56,784 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 22:02:31] 2025-06-05 19:53:56,785 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 22:02:31] 2025-06-05 19:53:56,785 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 22:02:31] 2025-06-05 19:53:56,785 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 22:02:31] 2025-06-05 19:53:56,785 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 22:02:31] 2025-06-05 19:53:56,785 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 22:02:31] 2025-06-05 19:53:56,785 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 22:02:31] 2025-06-05 19:53:56,785 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 22:02:31] 2025-06-05 19:53:56,785 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 22:02:31] 2025-06-05 19:53:56,785 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 22:02:31] 2025-06-05 19:53:56,785 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 22:02:31] 2025-06-05 19:53:56,785 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 22:02:31] 2025-06-05 19:53:56,785 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 22:02:31] 2025-06-05 19:53:56,786 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 22:02:31] 2025-06-05 19:53:56,786 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 22:02:31] 2025-06-05 19:53:56,786 | INFO     | job 6668233166 has completed (purged errors)
[2025-06-05 22:02:31] 2025-06-05 19:53:56,786 | INFO     | overall cleanup function is called
[2025-06-05 22:02:31] 2025-06-05 19:53:57,795 | INFO     | --- collectZombieJob: --- 10, [32022]
[2025-06-05 22:02:31] 2025-06-05 19:53:57,796 | INFO     | zombie collector waiting for pid 32022
[2025-06-05 22:02:31] 2025-06-05 19:53:57,796 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 22:02:31] 2025-06-05 19:53:57,796 | INFO     | collected zombie processes
[2025-06-05 22:02:31] 2025-06-05 19:53:57,796 | INFO     | will attempt to kill all subprocesses of pid=32022
[2025-06-05 22:02:31] 2025-06-05 19:53:57,930 | INFO     | process IDs to be killed: [32022] (in reverse order)
[2025-06-05 22:02:31] 2025-06-05 19:53:58,718 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 22:02:31] 2025-06-05 19:53:58,718 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 22:02:31] 2025-06-05 19:53:58,722 | INFO     | did not find any defunct processes belonging to 32022
[2025-06-05 22:02:31] 2025-06-05 19:53:58,725 | INFO     | did not find any defunct processes belonging to 32022
[2025-06-05 22:02:31] 2025-06-05 19:53:58,726 | INFO     | ready for new job
[2025-06-05 22:02:31] 2025-06-05 19:53:58,726 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 22:02:31] 2025-06-05 19:53:58,728 | INFO     | **************************************
[2025-06-05 22:02:31] 2025-06-05 19:53:58,728 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 22:02:31] 2025-06-05 19:53:58,728 | INFO     | **************************************
[2025-06-05 22:02:31] 2025-06-05 19:53:58,728 | INFO     | 
[2025-06-05 22:02:31] 2025-06-05 19:53:58,729 | INFO     | pilot is running in a VM
[2025-06-05 22:02:31] 2025-06-05 19:53:58,729 | INFO     | architecture information:
[2025-06-05 22:02:31] 2025-06-05 19:53:58,731 | INFO     | executing command: cat /etc/os-release
[2025-06-05 22:02:31] 2025-06-05 19:53:58,917 | INFO     | cat /etc/os-release:
[2025-06-05 22:02:31] NAME="CentOS Linux"
[2025-06-05 22:02:31] VERSION="7 (Core)"
[2025-06-05 22:02:31] ID="centos"
[2025-06-05 22:02:31] ID_LIKE="rhel fedora"
[2025-06-05 22:02:31] VERSION_ID="7"
[2025-06-05 22:02:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 22:02:31] ANSI_COLOR="0;31"
[2025-06-05 22:02:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 22:02:31] HOME_URL="https://www.centos.org/"
[2025-06-05 22:02:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 22:02:31] 
[2025-06-05 22:02:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 22:02:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 22:02:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 22:02:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 22:02:31] 
[2025-06-05 22:02:31] 2025-06-05 19:53:58,918 | INFO     | **************************************
[2025-06-05 22:02:31] 2025-06-05 19:53:59,421 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-06-05 22:02:31] 2025-06-05 19:53:59,474 | INFO     | sufficient remaining disk space (496819503104 B)
[2025-06-05 22:02:31] 2025-06-05 19:53:59,474 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 22:02:31] 2025-06-05 19:53:59,474 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 22:02:31] 2025-06-05 19:53:59,474 | INFO     | update_server=False
[2025-06-05 22:02:31] 2025-06-05 19:53:59,474 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 22:02:31] 2025-06-05 19:53:59,475 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 22:02:31] 2025-06-05 19:53:59,475 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 22:02:31] 2025-06-05 19:53:59,475 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 22:02:31] 2025-06-05 19:53:59,475 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 22:02:31] 2025-06-05 19:54:00,159 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 22:02:31] 2025-06-05 19:54:00,160 | INFO     | aborting loop
[2025-06-05 22:02:31] 2025-06-05 19:54:00,235 | INFO     | all job control threads have been joined
[2025-06-05 22:02:31] 2025-06-05 19:54:00,480 | INFO     | [job] retrieve thread has finished
[2025-06-05 22:02:31] 2025-06-05 19:54:00,578 | INFO     | all data control threads have been joined
[2025-06-05 22:02:31] 2025-06-05 19:54:00,641 | INFO     | all payload control threads have been joined
[2025-06-05 22:02:31] 2025-06-05 19:54:00,744 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 22:02:31] 2025-06-05 19:54:00,856 | INFO     | [payload] failed_post thread has finished
[2025-06-05 22:02:31] 2025-06-05 19:54:00,920 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 22:02:31] 2025-06-05 19:54:00,958 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 22:02:31] 2025-06-05 19:54:01,165 | INFO     | [job] job monitor thread has finished
[2025-06-05 22:02:31] 2025-06-05 19:54:01,219 | INFO     | [job] validate thread has finished
[2025-06-05 22:02:31] 2025-06-05 19:54:01,241 | INFO     | [job] control thread has finished
[2025-06-05 22:02:31] 2025-06-05 19:54:01,298 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 22:02:31] 2025-06-05 19:54:01,532 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 22:02:31] 2025-06-05 19:54:01,570 | INFO     | [data] copytool_in thread has finished
[2025-06-05 22:02:31] 2025-06-05 19:54:01,584 | INFO     | [data] control thread has finished
[2025-06-05 22:02:31] 2025-06-05 19:54:01,596 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 22:02:31] 2025-06-05 19:54:01,647 | INFO     | [payload] control thread has finished
[2025-06-05 22:02:31] 2025-06-05 19:54:01,766 | INFO     | [payload] validate_post thread has finished
[2025-06-05 22:02:31] 2025-06-05 19:54:01,838 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 22:02:31] 2025-06-05 19:54:02,305 | INFO     | [job] queue monitor thread has finished
[2025-06-05 22:02:31] 2025-06-05 19:54:02,750 | INFO     | [data] copytool_out thread has finished
[2025-06-05 22:02:31] 2025-06-05 19:54:05,847 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 22:02:31] 2025-06-05 19:54:06,876 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140270241302336)>', '<ExcThread(monitor, started 140269655676672)>']
[2025-06-05 22:02:31] 2025-06-05 19:54:07,523 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 22:02:31] 2025-06-05 19:54:07,524 | INFO     | [monitor] control thread has ended
[2025-06-05 22:02:31] 2025-06-05 19:54:11,901 | INFO     | all workflow threads have been joined
[2025-06-05 22:02:31] 2025-06-05 19:54:11,902 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 22:02:31] 2025-06-05 19:54:11,902 | INFO     | traces error code: 0
[2025-06-05 22:02:31] 2025-06-05 19:54:11,902 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 22:02:31] 2025-06-05 19:54:12,218 [wrapper] ==== pilot stdout END ====
[2025-06-05 22:02:31] 2025-06-05 19:54:12,226 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 22:02:31] 2025-06-05 19:54:12,234 [wrapper] pilotpid: 21446
[2025-06-05 22:02:31] 2025-06-05 19:54:12,246 [wrapper] Pilot exit status: 0
[2025-06-05 22:02:31] 2025-06-05 19:54:12,303 [wrapper] pandaids: 6668233166
[2025-06-05 22:02:31] 2025-06-05 19:54:12,345 [wrapper] cleanup supervisor_pilot 14704 21447
[2025-06-05 22:02:31] 2025-06-05 19:54:12,349 [wrapper] Test setup, not cleaning
[2025-06-05 22:02:31] 2025-06-05 19:54:12,358 [wrapper] apfmon messages muted
[2025-06-05 22:02:31] 2025-06-05 19:54:12,362 [wrapper] ==== wrapper stdout END ====
[2025-06-05 22:02:31] 2025-06-05 19:54:12,367 [wrapper] ==== wrapper stderr END ====
[2025-06-05 22:02:31]  *** Error codes and diagnostics ***
[2025-06-05 22:02:31]     "exeErrorCode": 0,
[2025-06-05 22:02:31]     "exeErrorDiag": "",
[2025-06-05 22:02:31]     "pilotErrorCode": 0,
[2025-06-05 22:02:31]     "pilotErrorDiag": "",
[2025-06-05 22:02:31]  *** Listing of results directory ***
[2025-06-05 22:02:31] total 420052
[2025-06-05 22:02:31] -rw-r--r--. 1 boinc boinc    495897 May 28 10:16 pilot3.tar.gz
[2025-06-05 22:02:31] -rw-r--r--. 1 boinc boinc      5111 May 28 10:29 queuedata.json
[2025-06-05 22:02:31] -rwx------. 1 boinc boinc     37140 May 28 10:30 runpilot2-wrapper.sh
[2025-06-05 22:02:31] -rw-r--r--. 1 boinc boinc       100 Jun  5 16:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 22:02:31] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 16:54 run_atlas
[2025-06-05 22:02:31] -rw-r--r--. 1 boinc boinc       105 Jun  5 16:54 job.xml
[2025-06-05 22:02:31] -rw-r--r--. 2 boinc boinc 224604132 Jun  5 16:54 EVNT.44871834._003182.pool.root.1
[2025-06-05 22:02:31] -rw-r--r--. 2 boinc boinc     15093 Jun  5 16:54 start_atlas.sh
[2025-06-05 22:02:31] drwxrwx--x. 2 boinc boinc        68 Jun  5 16:54 shared
[2025-06-05 22:02:31] -rw-r--r--. 2 boinc boinc    508879 Jun  5 16:54 input.tar.gz
[2025-06-05 22:02:31] -rw-r--r--. 1 boinc boinc      6392 Jun  5 16:54 init_data.xml
[2025-06-05 22:02:31] -rw-r--r--. 1 boinc boinc         0 Jun  5 16:54 boinc_lockfile
[2025-06-05 22:02:31] -rw-r--r--. 1 boinc boinc      2559 Jun  5 16:55 pandaJob.out
[2025-06-05 22:02:31] -rw-------. 1 boinc boinc    983210 Jun  5 16:57 agis_schedconf.cvmfs.json
[2025-06-05 22:02:31] drwx------. 4 boinc boinc      4096 Jun  5 16:58 pilot3
[2025-06-05 22:02:31] -rw-------. 1 boinc boinc 197844498 Jun  5 21:50 HITS.44871837._081499.pool.root.1
[2025-06-05 22:02:31] -rw-r--r--. 1 boinc boinc       531 Jun  5 21:51 boinc_task_state.xml
[2025-06-05 22:02:31] -rw-------. 1 boinc boinc      1015 Jun  5 21:52 memory_monitor_summary.json
[2025-06-05 22:02:31] -rw-------. 1 boinc boinc   1598969 Jun  5 21:52 agis_ddmendpoints.agis.ALL.json
[2025-06-05 22:02:31] -rw-------. 1 boinc boinc    425289 Jun  5 21:52 log.44871837._081499.job.log.tgz.1
[2025-06-05 22:02:31] -rw-------. 1 boinc boinc      7692 Jun  5 21:53 heartbeat.json
[2025-06-05 22:02:31] -rw-------. 1 boinc boinc        95 Jun  5 21:53 pilot_heartbeat.json
[2025-06-05 22:02:31] -rw-------. 1 boinc boinc      4539 Jun  5 21:54 pilotlog.txt
[2025-06-05 22:02:31] -rw-------. 1 boinc boinc   1507354 Jun  5 21:54 log.44871837._081499.job.log.1
[2025-06-05 22:02:31] -rw-------. 1 boinc boinc       357 Jun  5 21:54 output.list
[2025-06-05 22:02:31] -rw-r--r--. 1 boinc boinc       620 Jun  5 21:54 runtime_log
[2025-06-05 22:02:31] -rw-------. 1 boinc boinc   1955840 Jun  5 21:54 result.tar.gz
[2025-06-05 22:02:31] -rw-------. 1 boinc boinc       657 Jun  5 21:54 SrkKDmbMRe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm7gbKDmJ9az9n.diag
[2025-06-05 22:02:31] -rw-r--r--. 1 boinc boinc      8659 Jun  5 21:54 runtime_log.err
[2025-06-05 22:02:31] -rw-r--r--. 1 boinc boinc      8192 Jun  5 22:02 boinc_mmap_file
[2025-06-05 22:02:31] -rw-r--r--. 1 boinc boinc        28 Jun  5 22:02 wrapper_checkpoint.txt
[2025-06-05 22:02:31] -rw-r--r--. 1 boinc boinc     20520 Jun  5 22:02 stderr.txt
[2025-06-05 22:02:31] HITS file was successfully produced:
[2025-06-05 22:02:31] -rw-------. 1 boinc boinc 197844498 Jun  5 21:50 shared/HITS.pool.root.1
[2025-06-05 22:02:31]  *** Contents of shared directory: ***
[2025-06-05 22:02:31] total 414976
[2025-06-05 22:02:31] -rw-r--r--. 2 boinc boinc 224604132 Jun  5 16:54 ATLAS.root_0
[2025-06-05 22:02:31] -rw-r--r--. 2 boinc boinc     15093 Jun  5 16:54 start_atlas.sh
[2025-06-05 22:02:31] -rw-r--r--. 2 boinc boinc    508879 Jun  5 16:54 input.tar.gz
[2025-06-05 22:02:31] -rw-------. 1 boinc boinc 197844498 Jun  5 21:50 HITS.pool.root.1
[2025-06-05 22:02:31] -rw-------. 1 boinc boinc   1955840 Jun  5 21:54 result.tar.gz
22:02:33 (10111): run_atlas exited; CPU time 64878.762814
22:02:33 (10111): called boinc_finish(0)

</stderr_txt>
]]>

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