Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:12:21 (120302): wrapper (7.7.26015): starting
10:12:21 (120302): wrapper: running run_atlas (--nthreads 10)
[2025-06-05 10:12:21] Arguments: --nthreads 10
[2025-06-05 10:12:21] Threads: 10
[2025-06-05 10:12:21] Checking for CVMFS
[2025-06-05 10:12:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 10:12:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 10:12:21] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 10:12:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 10:12:22] 2.12.6.0 3466542 96305 331792 146821 2 122 30813937 32935937 12740 130560 2 370251175 99.616 383406214 25696 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-05 10:12:22] CVMFS is ok
[2025-06-05 10:12:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 10:12:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 10:12:22] Further information can be found at the LHC@home message board.
[2025-06-05 10:12:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 10:12:22] Checking for apptainer binary...
[2025-06-05 10:12:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 10:12:22] Running /usr/bin/apptainer --version
[2025-06-05 10:12:22] apptainer version 1.4.1-1.el9
[2025-06-05 10:12:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 10:12:22] c-4-11.aglt2.org
[2025-06-05 10:12:22] apptainer works
[2025-06-05 10:12:22] Set ATHENA_PROC_NUMBER=10
[2025-06-05 10:12:22] Set ATHENA_CORE_NUMBER=10
[2025-06-05 10:12:22] Starting ATLAS job with PandaID=6668232005
[2025-06-05 10:12:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 12:03:14]  *** The last 200 lines of the pilot log: ***
[2025-06-05 12:03:14] 2025-06-05 16:02:50,638 | INFO     | total number of processed events: 400 (read)
[2025-06-05 12:03:14] 2025-06-05 16:02:50,653 | INFO     | executing command: lscpu
[2025-06-05 12:03:14] 2025-06-05 16:02:50,721 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 12:03:14] 2025-06-05 16:02:52,818 | INFO     | monitor loop #475: job 0:6668232005 is in state 'finished'
[2025-06-05 12:03:14] 2025-06-05 16:02:52,819 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 12:03:14] 2025-06-05 16:02:54,619 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 12:03:14] 2025-06-05 16:02:54,619 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6668232005/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 12:03:14] 2025-06-05 16:02:54,620 | INFO     | extracted standard info from prmon json
[2025-06-05 12:03:14] 2025-06-05 16:02:54,620 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 12:03:14] 2025-06-05 16:02:54,621 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 12:03:14] 2025-06-05 16:02:54,621 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 12:03:14] 2025-06-05 16:02:54,621 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 12:03:14] 2025-06-05 16:02:54,624 | INFO     | fitting pss+swap vs Time
[2025-06-05 12:03:14] 2025-06-05 16:02:54,624 | INFO     | sum of square deviations: 390582207.0
[2025-06-05 12:03:14] 2025-06-05 16:02:54,625 | INFO     | sum of deviations: 16316760253.000002
[2025-06-05 12:03:14] 2025-06-05 16:02:54,625 | INFO     | mean x: 1749136041.5
[2025-06-05 12:03:14] 2025-06-05 16:02:54,625 | INFO     | mean y: 2230288.4444444445
[2025-06-05 12:03:14] 2025-06-05 16:02:54,625 | INFO     | -- intersect: -73068772249.66391
[2025-06-05 12:03:14] 2025-06-05 16:02:54,625 | INFO     | intersect: -73068772249.66391
[2025-06-05 12:03:14] 2025-06-05 16:02:54,626 | INFO     | chi2: 1.5352324225654481
[2025-06-05 12:03:14] 2025-06-05 16:02:54,626 | INFO     | sum of square deviations: 338804492.0
[2025-06-05 12:03:14] 2025-06-05 16:02:54,627 | INFO     | sum of deviations: 18493810969.0
[2025-06-05 12:03:14] 2025-06-05 16:02:54,627 | INFO     | mean x: 1749135889.0
[2025-06-05 12:03:14] 2025-06-05 16:02:54,627 | INFO     | mean y: 2236549.0
[2025-06-05 12:03:14] 2025-06-05 16:02:54,627 | INFO     | -- intersect: -95475212109.67883
[2025-06-05 12:03:14] 2025-06-05 16:02:54,627 | INFO     | intersect: -95475212109.67883
[2025-06-05 12:03:14] 2025-06-05 16:02:54,627 | INFO     | chi2: 1.4726545320742868
[2025-06-05 12:03:14] 2025-06-05 16:02:54,627 | INFO     | current chi2=1.4726545320742868 (change=4.076118349988379 %)
[2025-06-05 12:03:14] 2025-06-05 16:02:54,628 | INFO     | right removable region: 102
[2025-06-05 12:03:14] 2025-06-05 16:02:54,628 | INFO     | sum of square deviations: 338804492.0
[2025-06-05 12:03:14] 2025-06-05 16:02:54,628 | INFO     | sum of deviations: 207370902.99999964
[2025-06-05 12:03:14] 2025-06-05 16:02:54,629 | INFO     | mean x: 1749136194.0
[2025-06-05 12:03:14] 2025-06-05 16:02:54,629 | INFO     | mean y: 2276982.291262136
[2025-06-05 12:03:14] 2025-06-05 16:02:54,629 | INFO     | -- intersect: -1068310806.786111
[2025-06-05 12:03:14] 2025-06-05 16:02:54,629 | INFO     | intersect: -1068310806.786111
[2025-06-05 12:03:14] 2025-06-05 16:02:54,629 | INFO     | chi2: 0.07998268088402728
[2025-06-05 12:03:14] 2025-06-05 16:02:54,629 | INFO     | current chi2=0.07998268088402728 (change=94.79019074190913 %)
[2025-06-05 12:03:14] 2025-06-05 16:02:54,629 | INFO     | sum of square deviations: 291817564.5
[2025-06-05 12:03:14] 2025-06-05 16:02:54,630 | INFO     | sum of deviations: -558310399.4999986
[2025-06-05 12:03:14] 2025-06-05 16:02:54,630 | INFO     | mean x: 1749136346.5
[2025-06-05 12:03:14] 2025-06-05 16:02:54,630 | INFO     | mean y: 2279530.5816326533
[2025-06-05 12:03:14] 2025-06-05 16:02:54,630 | INFO     | -- intersect: 3348757368.7735243
[2025-06-05 12:03:14] 2025-06-05 16:02:54,630 | INFO     | intersect: 3348757368.7735243
[2025-06-05 12:03:14] 2025-06-05 16:02:54,631 | INFO     | chi2: 0.06818510860836366
[2025-06-05 12:03:14] 2025-06-05 16:02:54,631 | INFO     | current chi2=0.06818510860836366 (change=14.750158590920181 %)
[2025-06-05 12:03:14] 2025-06-05 16:02:54,631 | INFO     | left removable region: 20
[2025-06-05 12:03:14] 2025-06-05 16:02:54,631 | INFO     | sum of square deviations: 170944600.5
[2025-06-05 12:03:14] 2025-06-05 16:02:54,632 | INFO     | sum of deviations: 1248511217.0
[2025-06-05 12:03:14] 2025-06-05 16:02:54,632 | INFO     | mean x: 1749136468.5
[2025-06-05 12:03:14] 2025-06-05 16:02:54,632 | INFO     | mean y: 2292752.1463414636
[2025-06-05 12:03:14] 2025-06-05 16:02:54,632 | INFO     | -- intersect: -12772702741.121767
[2025-06-05 12:03:14] 2025-06-05 16:02:54,632 | INFO     | intersect: -12772702741.121767
[2025-06-05 12:03:14] 2025-06-05 16:02:54,632 | INFO     | chi2: 0.015516116287501899
[2025-06-05 12:03:14] 2025-06-05 16:02:54,632 | INFO     | -- intersect: -12772702741.121767
[2025-06-05 12:03:14] 2025-06-05 16:02:54,633 | INFO     | current memory leak: 7.30 B/s (using 82 data points, chi2=0.02)
[2025-06-05 12:03:14] 2025-06-05 16:02:54,633 | INFO     | ..............................
[2025-06-05 12:03:14] 2025-06-05 16:02:54,633 | INFO     | . Timing measurements:
[2025-06-05 12:03:14] 2025-06-05 16:02:54,633 | INFO     | . get job = 0 s
[2025-06-05 12:03:14] 2025-06-05 16:02:54,634 | INFO     | . initial setup = 2 s
[2025-06-05 12:03:14] 2025-06-05 16:02:54,634 | INFO     | . payload setup = 6 s
[2025-06-05 12:03:14] 2025-06-05 16:02:54,634 | INFO     | . stage-in = 0 s
[2025-06-05 12:03:14] 2025-06-05 16:02:54,634 | INFO     | . payload execution = 6587 s
[2025-06-05 12:03:14] 2025-06-05 16:02:54,634 | INFO     | . stage-out = 1 s
[2025-06-05 12:03:14] 2025-06-05 16:02:54,634 | INFO     | . log creation = 0 s
[2025-06-05 12:03:14] 2025-06-05 16:02:54,634 | INFO     | ..............................
[2025-06-05 12:03:14] 2025-06-05 16:02:55,054 | INFO     | 
[2025-06-05 12:03:14] 2025-06-05 16:02:55,055 | INFO     | job summary report
[2025-06-05 12:03:14] 2025-06-05 16:02:55,055 | INFO     | --------------------------------------------------
[2025-06-05 12:03:14] 2025-06-05 16:02:55,055 | INFO     | PanDA job id: 6668232005
[2025-06-05 12:03:14] 2025-06-05 16:02:55,055 | INFO     | task id: 44871837
[2025-06-05 12:03:14] 2025-06-05 16:02:55,055 | INFO     | errors: (none)
[2025-06-05 12:03:14] 2025-06-05 16:02:55,055 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 12:03:14] 2025-06-05 16:02:55,055 | INFO     | pilot state: finished 
[2025-06-05 12:03:14] 2025-06-05 16:02:55,055 | INFO     | transexitcode: 0
[2025-06-05 12:03:14] 2025-06-05 16:02:55,055 | INFO     | exeerrorcode: 0
[2025-06-05 12:03:14] 2025-06-05 16:02:55,056 | INFO     | exeerrordiag: 
[2025-06-05 12:03:14] 2025-06-05 16:02:55,056 | INFO     | exitcode: 0
[2025-06-05 12:03:14] 2025-06-05 16:02:55,056 | INFO     | exitmsg: OK
[2025-06-05 12:03:14] 2025-06-05 16:02:55,056 | INFO     | cpuconsumptiontime: 58369 s
[2025-06-05 12:03:14] 2025-06-05 16:02:55,056 | INFO     | nevents: 400
[2025-06-05 12:03:14] 2025-06-05 16:02:55,056 | INFO     | neventsw: 0
[2025-06-05 12:03:14] 2025-06-05 16:02:55,056 | INFO     | pid: 130868
[2025-06-05 12:03:14] 2025-06-05 16:02:55,056 | INFO     | pgrp: 130868
[2025-06-05 12:03:14] 2025-06-05 16:02:55,056 | INFO     | corecount: 10
[2025-06-05 12:03:14] 2025-06-05 16:02:55,056 | INFO     | event service: False
[2025-06-05 12:03:14] 2025-06-05 16:02:55,057 | INFO     | sizes: {0: 2396564, 1: 2397420, 5: 2397626, 12: 2397682, 6597: 2424728, 6598: 2433669, 6602: 2433853, 6608: 2434023}
[2025-06-05 12:03:14] 2025-06-05 16:02:55,057 | INFO     | --------------------------------------------------
[2025-06-05 12:03:14] 2025-06-05 16:02:55,057 | INFO     | 
[2025-06-05 12:03:14] 2025-06-05 16:02:55,057 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 12:03:14] 2025-06-05 16:02:55,077 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 12:03:14] 2025-06-05 16:02:55,078 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 12:03:14] 2025-06-05 16:02:55,078 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 12:03:14] 2025-06-05 16:02:55,078 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 12:03:14] 2025-06-05 16:02:55,078 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 12:03:14] 2025-06-05 16:02:55,078 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 12:03:14] 2025-06-05 16:02:55,078 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 12:03:14] 2025-06-05 16:02:55,078 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 12:03:14] 2025-06-05 16:02:55,078 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 12:03:14] 2025-06-05 16:02:55,078 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 12:03:14] 2025-06-05 16:02:55,078 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 12:03:14] 2025-06-05 16:02:55,078 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 12:03:14] 2025-06-05 16:02:55,079 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 12:03:14] 2025-06-05 16:02:55,079 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 12:03:14] 2025-06-05 16:02:55,079 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 12:03:14] 2025-06-05 16:02:55,079 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 12:03:14] 2025-06-05 16:02:55,079 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 12:03:14] 2025-06-05 16:02:55,079 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 12:03:14] 2025-06-05 16:02:55,079 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 12:03:14] 2025-06-05 16:02:55,079 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 12:03:14] 2025-06-05 16:02:55,079 | INFO     | job 6668232005 has completed (purged errors)
[2025-06-05 12:03:14] 2025-06-05 16:02:55,079 | INFO     | overall cleanup function is called
[2025-06-05 12:03:14] 2025-06-05 16:02:56,083 | INFO     | --- collectZombieJob: --- 10, [130868]
[2025-06-05 12:03:14] 2025-06-05 16:02:56,084 | INFO     | zombie collector waiting for pid 130868
[2025-06-05 12:03:14] 2025-06-05 16:02:56,084 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 12:03:14] 2025-06-05 16:02:56,084 | INFO     | collected zombie processes
[2025-06-05 12:03:14] 2025-06-05 16:02:56,084 | INFO     | will attempt to kill all subprocesses of pid=130868
[2025-06-05 12:03:14] 2025-06-05 16:02:56,402 | INFO     | process IDs to be killed: [130868] (in reverse order)
[2025-06-05 12:03:14] 2025-06-05 16:02:56,499 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 12:03:14] 2025-06-05 16:02:56,499 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 12:03:14] 2025-06-05 16:02:56,511 | INFO     | did not find any defunct processes belonging to 130868
[2025-06-05 12:03:14] 2025-06-05 16:02:56,522 | INFO     | did not find any defunct processes belonging to 130868
[2025-06-05 12:03:14] 2025-06-05 16:02:56,522 | INFO     | ready for new job
[2025-06-05 12:03:14] 2025-06-05 16:02:56,523 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 12:03:14] 2025-06-05 16:02:56,524 | INFO     | **************************************
[2025-06-05 12:03:14] 2025-06-05 16:02:56,524 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 12:03:14] 2025-06-05 16:02:56,524 | INFO     | **************************************
[2025-06-05 12:03:14] 2025-06-05 16:02:56,524 | INFO     | 
[2025-06-05 12:03:14] 2025-06-05 16:02:56,539 | INFO     | architecture information:
[2025-06-05 12:03:14] 2025-06-05 16:02:56,540 | INFO     | executing command: cat /etc/os-release
[2025-06-05 12:03:14] 2025-06-05 16:02:56,555 | INFO     | cat /etc/os-release:
[2025-06-05 12:03:14] NAME="CentOS Linux"
[2025-06-05 12:03:14] VERSION="7 (Core)"
[2025-06-05 12:03:14] ID="centos"
[2025-06-05 12:03:14] ID_LIKE="rhel fedora"
[2025-06-05 12:03:14] VERSION_ID="7"
[2025-06-05 12:03:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 12:03:14] ANSI_COLOR="0;31"
[2025-06-05 12:03:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 12:03:14] HOME_URL="https://www.centos.org/"
[2025-06-05 12:03:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 12:03:14] 
[2025-06-05 12:03:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 12:03:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 12:03:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 12:03:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 12:03:14] 
[2025-06-05 12:03:14] 2025-06-05 16:02:56,555 | INFO     | **************************************
[2025-06-05 12:03:14] 2025-06-05 16:02:57,058 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 12:03:14] 2025-06-05 16:02:57,073 | INFO     | sufficient remaining disk space (76560728064 B)
[2025-06-05 12:03:14] 2025-06-05 16:02:57,074 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 12:03:14] 2025-06-05 16:02:57,074 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 12:03:14] 2025-06-05 16:02:57,074 | INFO     | update_server=False
[2025-06-05 12:03:14] 2025-06-05 16:02:57,074 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 12:03:14] 2025-06-05 16:02:57,074 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 12:03:14] 2025-06-05 16:02:57,075 | INFO     | aborting loop
[2025-06-05 12:03:14] 2025-06-05 16:02:57,719 | INFO     | all job control threads have been joined
[2025-06-05 12:03:14] 2025-06-05 16:02:57,805 | INFO     | all payload control threads have been joined
[2025-06-05 12:03:14] 2025-06-05 16:02:57,809 | INFO     | all data control threads have been joined
[2025-06-05 12:03:14] 2025-06-05 16:02:58,079 | INFO     | [job] job monitor thread has finished
[2025-06-05 12:03:14] 2025-06-05 16:02:58,080 | INFO     | [job] retrieve thread has finished
[2025-06-05 12:03:14] 2025-06-05 16:02:58,169 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 12:03:14] 2025-06-05 16:02:58,255 | INFO     | [payload] failed_post thread has finished
[2025-06-05 12:03:14] 2025-06-05 16:02:58,380 | INFO     | PID=124275 has CPU usage=13.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-05 12:03:14] 2025-06-05 16:02:58,380 | INFO     | .. there are 18 such processes running
[2025-06-05 12:03:14] 2025-06-05 16:02:58,380 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 12:03:14] 2025-06-05 16:02:58,380 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 12:03:14] 2025-06-05 16:02:58,381 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 12:03:14] 2025-06-05 16:02:58,385 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 12:03:14] 2025-06-05 16:02:58,446 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 12:03:14] 2025-06-05 16:02:58,479 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 12:03:14] 2025-06-05 16:02:58,724 | INFO     | [job] control thread has finished
[2025-06-05 12:03:14] 2025-06-05 16:02:58,810 | INFO     | [payload] control thread has finished
[2025-06-05 12:03:14] 2025-06-05 16:02:58,813 | INFO     | [data] control thread has finished
[2025-06-05 12:03:14] 2025-06-05 16:02:58,959 | INFO     | [data] copytool_in thread has finished
[2025-06-05 12:03:14] 2025-06-05 16:02:58,961 | INFO     | [job] validate thread has finished
[2025-06-05 12:03:14] 2025-06-05 16:02:59,178 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 12:03:14] 2025-06-05 16:02:59,399 | INFO     | [payload] validate_post thread has finished
[2025-06-05 12:03:14] 2025-06-05 16:02:59,748 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 12:03:14] 2025-06-05 16:03:00,174 | INFO     | [data] copytool_out thread has finished
[2025-06-05 12:03:14] 2025-06-05 16:03:00,752 | INFO     | [job] queue monitor thread has finished
[2025-06-05 12:03:14] 2025-06-05 16:03:03,180 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 12:03:14] 2025-06-05 16:03:08,054 | INFO     | job.realtimelogging is not enabled
[2025-06-05 12:03:14] 2025-06-05 16:03:09,059 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 12:03:14] 2025-06-05 16:03:09,158 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139622205298496)>', '<ExcThread(monitor, started 139621711202048)>']
[2025-06-05 12:03:14] 2025-06-05 16:03:09,430 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 12:03:14] 2025-06-05 16:03:09,430 | INFO     | [monitor] control thread has ended
[2025-06-05 12:03:14] 2025-06-05 16:03:14,183 | INFO     | all workflow threads have been joined
[2025-06-05 12:03:14] 2025-06-05 16:03:14,184 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 12:03:14] 2025-06-05 16:03:14,184 | INFO     | traces error code: 0
[2025-06-05 12:03:14] 2025-06-05 16:03:14,184 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 12:03:14] 2025-06-05 16:03:14,340 [wrapper] ==== pilot stdout END ====
[2025-06-05 12:03:14] 2025-06-05 16:03:14,343 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 12:03:14] 2025-06-05 16:03:14,346 [wrapper] pilotpid: 124275
[2025-06-05 12:03:14] 2025-06-05 16:03:14,349 [wrapper] Pilot exit status: 0
[2025-06-05 12:03:14] 2025-06-05 16:03:14,360 [wrapper] pandaids: 6668232005
[2025-06-05 12:03:14] 2025-06-05 16:03:14,419 [wrapper] cleanup supervisor_pilot  468076 124276
[2025-06-05 12:03:14] 2025-06-05 16:03:14,422 [wrapper] Test setup, not cleaning
[2025-06-05 12:03:14] 2025-06-05 16:03:14,425 [wrapper] apfmon messages muted
[2025-06-05 12:03:14] 2025-06-05 16:03:14,427 [wrapper] ==== wrapper stdout END ====
[2025-06-05 12:03:14] 2025-06-05 16:03:14,430 [wrapper] ==== wrapper stderr END ====
[2025-06-05 12:03:14]  *** Error codes and diagnostics ***
[2025-06-05 12:03:14]     "exeErrorCode": 0,
[2025-06-05 12:03:14]     "exeErrorDiag": "",
[2025-06-05 12:03:14]     "pilotErrorCode": 0,
[2025-06-05 12:03:14]     "pilotErrorDiag": "",
[2025-06-05 12:03:14]  *** Listing of results directory ***
[2025-06-05 12:03:14] total 414872
[2025-06-05 12:03:14] -rw-r--r--. 1 boincer umatlas    495897 May 28 04:01 pilot3.tar.gz
[2025-06-05 12:03:14] -rwx------. 1 boincer umatlas     37140 May 28 04:14 runpilot2-wrapper.sh
[2025-06-05 12:03:14] -rw-r--r--. 1 boincer umatlas      5111 May 28 04:14 queuedata.json
[2025-06-05 12:03:14] -rw-r--r--. 1 boincer umatlas       100 Jun  5 10:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 12:03:14] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  5 10:12 run_atlas
[2025-06-05 12:03:14] -rw-r--r--. 1 boincer umatlas       105 Jun  5 10:12 job.xml
[2025-06-05 12:03:14] -rw-r--r--. 2 boincer umatlas 224350532 Jun  5 10:12 EVNT.44871834._003170.pool.root.1
[2025-06-05 12:03:14] -rw-r--r--. 2 boincer umatlas    508875 Jun  5 10:12 input.tar.gz
[2025-06-05 12:03:14] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 10:12 start_atlas.sh
[2025-06-05 12:03:14] drwxrwx--x. 2 boincer umatlas      4096 Jun  5 10:12 shared
[2025-06-05 12:03:14] -rw-r--r--. 1 boincer umatlas         0 Jun  5 10:12 boinc_lockfile
[2025-06-05 12:03:14] -rw-r--r--. 1 boincer umatlas      2559 Jun  5 10:12 pandaJob.out
[2025-06-05 12:03:14] -rw-------. 1 boincer umatlas    983210 Jun  5 10:12 agis_schedconf.cvmfs.json
[2025-06-05 12:03:14] -rw-------. 1 boincer umatlas   1598969 Jun  5 10:12 agis_ddmendpoints.agis.ALL.json
[2025-06-05 12:03:14] drwx------. 4 boincer umatlas      4096 Jun  5 10:12 pilot3
[2025-06-05 12:03:14] -rw-r--r--. 1 boincer umatlas      6673 Jun  5 12:01 init_data.xml
[2025-06-05 12:03:14] -rw-r--r--. 1 boincer umatlas       529 Jun  5 12:02 boinc_task_state.xml
[2025-06-05 12:03:14] -rw-------. 1 boincer umatlas 194696570 Jun  5 12:02 HITS.44871837._081184.pool.root.1
[2025-06-05 12:03:14] -rw-------. 1 boincer umatlas        95 Jun  5 12:02 pilot_heartbeat.json
[2025-06-05 12:03:14] -rw-------. 1 boincer umatlas      1045 Jun  5 12:02 memory_monitor_summary.json
[2025-06-05 12:03:14] -rw-------. 1 boincer umatlas    348328 Jun  5 12:02 log.44871837._081184.job.log.tgz.1
[2025-06-05 12:03:14] -rw-------. 1 boincer umatlas      7722 Jun  5 12:02 heartbeat.json
[2025-06-05 12:03:14] -rw-r--r--. 1 boincer umatlas      8192 Jun  5 12:03 boinc_mmap_file
[2025-06-05 12:03:14] -rw-r--r--. 1 boincer umatlas        27 Jun  5 12:03 wrapper_checkpoint.txt
[2025-06-05 12:03:14] -rw-------. 1 boincer umatlas      4820 Jun  5 12:03 pilotlog.txt
[2025-06-05 12:03:14] -rw-------. 1 boincer umatlas    624845 Jun  5 12:03 log.44871837._081184.job.log.1
[2025-06-05 12:03:14] -rw-------. 1 boincer umatlas       357 Jun  5 12:03 output.list
[2025-06-05 12:03:14] -rw-r--r--. 1 boincer umatlas       620 Jun  5 12:03 runtime_log
[2025-06-05 12:03:14] -rw-------. 1 boincer umatlas    993280 Jun  5 12:03 result.tar.gz
[2025-06-05 12:03:14] -rw-r--r--. 1 boincer umatlas      8651 Jun  5 12:03 runtime_log.err
[2025-06-05 12:03:14] -rw-------. 1 boincer umatlas       652 Jun  5 12:03 M37LDmy6Qe7n9Rq4apOajLDm4fhM0noT9bVof3QYDmzBTKDms32Hqm.diag
[2025-06-05 12:03:14] -rw-r--r--. 1 boincer umatlas     21145 Jun  5 12:03 stderr.txt
[2025-06-05 12:03:14] HITS file was successfully produced:
[2025-06-05 12:03:14] -rw-------. 1 boincer umatlas 194696570 Jun  5 12:02 shared/HITS.pool.root.1
[2025-06-05 12:03:14]  *** Contents of shared directory: ***
[2025-06-05 12:03:14] total 410724
[2025-06-05 12:03:14] -rw-r--r--. 2 boincer umatlas 224350532 Jun  5 10:12 ATLAS.root_0
[2025-06-05 12:03:14] -rw-r--r--. 2 boincer umatlas    508875 Jun  5 10:12 input.tar.gz
[2025-06-05 12:03:14] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 10:12 start_atlas.sh
[2025-06-05 12:03:14] -rw-------. 1 boincer umatlas 194696570 Jun  5 12:02 HITS.pool.root.1
[2025-06-05 12:03:14] -rw-------. 1 boincer umatlas    993280 Jun  5 12:03 result.tar.gz
12:03:15 (120302): run_atlas exited; CPU time 58518.615336
12:03:15 (120302): called boinc_finish(0)

</stderr_txt>
]]>

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