Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
09:54:26 (27327): wrapper (7.7.26015): starting
09:54:26 (27327): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 09:54:26] Arguments: --nthreads 8
[2025-06-05 09:54:26] Threads: 8
[2025-06-05 09:54:26] Checking for CVMFS
[2025-06-05 09:54:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 09:54:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 09:54:26] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 09:54:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 09:54:26] 2.11.2.0 3213 442145 244028 146820 0 10 15808811 20275200 26 130560 0 131413958 99.991 19625831 18387 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-05 09:54:26] CVMFS is ok
[2025-06-05 09:54:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 09:54:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 09:54:26] Further information can be found at the LHC@home message board.
[2025-06-05 09:54:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 09:54:26] Checking for apptainer binary...
[2025-06-05 09:54:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 09:54:26] Running /usr/bin/apptainer --version
[2025-06-05 09:54:26] apptainer version 1.3.2-1.el7
[2025-06-05 09:54:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 09:54:26] c-205-38.aglt2.org
[2025-06-05 09:54:26] apptainer works
[2025-06-05 09:54:26] Set ATHENA_PROC_NUMBER=8
[2025-06-05 09:54:26] Set ATHENA_CORE_NUMBER=8
[2025-06-05 09:54:26] Starting ATLAS job with PandaID=6680798635
[2025-06-05 09:54:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 10:45:23]  *** The last 200 lines of the pilot log: ***
[2025-06-05 10:45:23]  lfn=log.45006595._057093.job.log.tgz.1
[2025-06-05 10:45:23]  mtime=0
[2025-06-05 10:45:23]  protocol_id=None
[2025-06-05 10:45:23]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-05 10:45:23]  replicas=None
[2025-06-05 10:45:23]  scope=mc23_13p6TeV
[2025-06-05 10:45:23]  status=None
[2025-06-05 10:45:23]  status_code=0
[2025-06-05 10:45:23]  storage_token=
[2025-06-05 10:45:23]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6680798635/log.45006595._057093.job.log.tgz.1
[2025-06-05 10:45:23]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2b/52/log.45006595._057093.job.log.tgz.1
[2025-06-05 10:45:23]  workdir=None
[2025-06-05 10:45:23] ]
[2025-06-05 10:45:23] 2025-06-05 14:44:46,013 | INFO     | transferring file log.45006595._057093.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6680798635/log.45006595._057093.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-05 10:45:23] 2025-06-05 14:44:46,014 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6680798635/log.45006595._057093.job.log.tgz.1 /tmp/boinchome/slots/1/log.45006595._057093.job
[2025-06-05 10:45:23] 2025-06-05 14:44:46,028 | INFO     | adding to output.list: log.45006595._057093.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2b/52/log.45006595._057093.job.log.tg
[2025-06-05 10:45:23] 2025-06-05 14:44:46,029 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-05 10:45:23] 2025-06-05 14:44:46,029 | INFO     | summary of transferred files:
[2025-06-05 10:45:23] 2025-06-05 14:44:46,029 | INFO     |  -- lfn=log.45006595._057093.job.log.tgz.1, status_code=0, status=transferred
[2025-06-05 10:45:23] 2025-06-05 14:44:46,030 | INFO     | stage-out finished correctly
[2025-06-05 10:45:23] 2025-06-05 14:44:47,114 | WARNING  | process 16413 can no longer be monitored (due to stat problems) - aborting
[2025-06-05 10:45:23] 2025-06-05 14:44:47,115 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6680798635/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 10:45:23] 2025-06-05 14:44:47,177 | INFO     | number of running child processes to parent process 16413: 1
[2025-06-05 10:45:23] 2025-06-05 14:44:47,177 | INFO     | maximum number of monitored processes: 6
[2025-06-05 10:45:23] 2025-06-05 14:44:48,223 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-05 10:45:23] 2025-06-05 14:44:48,428 | INFO     | job 6680798635 has state=finished
[2025-06-05 10:45:23] 2025-06-05 14:44:48,429 | INFO     | preparing for final server update for job 6680798635 in state='finished'
[2025-06-05 10:45:23] 2025-06-05 14:44:48,429 | INFO     | this job has now completed (state=finished)
[2025-06-05 10:45:23] 2025-06-05 14:44:48,429 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-05 10:45:23] 2025-06-05 14:44:48,430 | INFO     | log transfer has been attempted: DONE
[2025-06-05 10:45:23] 2025-06-05 14:44:48,430 | INFO     | job 6680798635 has finished - writing final server update
[2025-06-05 10:45:23] 2025-06-05 14:44:48,430 | INFO     | total number of processed events: 400 (read)
[2025-06-05 10:45:23] 2025-06-05 14:44:48,431 | INFO     | executing command: lscpu
[2025-06-05 10:45:23] 2025-06-05 14:44:48,452 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 10:45:23] 2025-06-05 14:44:49,680 | INFO     | monitor loop #228: job 0:6680798635 is in state 'finished'
[2025-06-05 10:45:23] 2025-06-05 14:44:49,681 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 10:45:23] 2025-06-05 14:44:51,561 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 10:45:23] 2025-06-05 14:44:51,564 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 2716.9795625
[2025-06-05 10:45:23] 2025-06-05 14:44:51,566 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6680798635/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 10:45:23] 2025-06-05 14:44:51,566 | INFO     | extracted standard info from prmon json
[2025-06-05 10:45:23] 2025-06-05 14:44:51,567 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 10:45:23] 2025-06-05 14:44:51,567 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 10:45:23] 2025-06-05 14:44:51,567 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 10:45:23] 2025-06-05 14:44:51,567 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 10:45:23] 2025-06-05 14:44:51,568 | INFO     | fitting pss+swap vs Time
[2025-06-05 10:45:23] 2025-06-05 14:44:51,568 | INFO     | sum of square deviations: 22960430.5
[2025-06-05 10:45:23] 2025-06-05 14:44:51,568 | INFO     | sum of deviations: -834670380.9999999
[2025-06-05 10:45:23] 2025-06-05 14:44:51,568 | INFO     | mean x: 1749133250.5
[2025-06-05 10:45:23] 2025-06-05 14:44:51,569 | INFO     | mean y: 2529121.1428571427
[2025-06-05 10:45:23] 2025-06-05 14:44:51,569 | INFO     | -- intersect: 63587997024.91771
[2025-06-05 10:45:23] 2025-06-05 14:44:51,569 | INFO     | intersect: 63587997024.91771
[2025-06-05 10:45:23] 2025-06-05 14:44:51,569 | INFO     | chi2: 0.010393249091190066
[2025-06-05 10:45:23] 2025-06-05 14:44:51,569 | INFO     | -- intersect: 63587997024.91771
[2025-06-05 10:45:23] 2025-06-05 14:44:51,569 | INFO     | current memory leak: -36.35 B/s (using 42 data points, chi2=0.01)
[2025-06-05 10:45:23] 2025-06-05 14:44:51,569 | INFO     | could have reported an average CPU frequency of 2622 MHz (5 samples)
[2025-06-05 10:45:23] 2025-06-05 14:44:51,569 | INFO     | ..............................
[2025-06-05 10:45:23] 2025-06-05 14:44:51,569 | INFO     | . Timing measurements:
[2025-06-05 10:45:23] 2025-06-05 14:44:51,569 | INFO     | . get job = 0 s
[2025-06-05 10:45:23] 2025-06-05 14:44:51,570 | INFO     | . initial setup = 2 s
[2025-06-05 10:45:23] 2025-06-05 14:44:51,570 | INFO     | . payload setup = 3 s
[2025-06-05 10:45:23] 2025-06-05 14:44:51,570 | INFO     | . stage-in = 0 s
[2025-06-05 10:45:23] 2025-06-05 14:44:51,570 | INFO     | . payload execution = 2989 s
[2025-06-05 10:45:23] 2025-06-05 14:44:51,570 | INFO     | . stage-out = 0 s
[2025-06-05 10:45:23] 2025-06-05 14:44:51,570 | INFO     | . log creation = 0 s
[2025-06-05 10:45:23] 2025-06-05 14:44:51,570 | INFO     | ..............................
[2025-06-05 10:45:23] 2025-06-05 14:44:51,626 | INFO     | 
[2025-06-05 10:45:23] 2025-06-05 14:44:51,626 | INFO     | job summary report
[2025-06-05 10:45:23] 2025-06-05 14:44:51,626 | INFO     | --------------------------------------------------
[2025-06-05 10:45:23] 2025-06-05 14:44:51,626 | INFO     | PanDA job id: 6680798635
[2025-06-05 10:45:23] 2025-06-05 14:44:51,626 | INFO     | task id: 45006595
[2025-06-05 10:45:23] 2025-06-05 14:44:51,626 | INFO     | errors: (none)
[2025-06-05 10:45:23] 2025-06-05 14:44:51,626 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 10:45:23] 2025-06-05 14:44:51,626 | INFO     | pilot state: finished 
[2025-06-05 10:45:23] 2025-06-05 14:44:51,626 | INFO     | transexitcode: 0
[2025-06-05 10:45:23] 2025-06-05 14:44:51,626 | INFO     | exeerrorcode: 0
[2025-06-05 10:45:23] 2025-06-05 14:44:51,626 | INFO     | exeerrordiag: 
[2025-06-05 10:45:23] 2025-06-05 14:44:51,626 | INFO     | exitcode: 0
[2025-06-05 10:45:23] 2025-06-05 14:44:51,626 | INFO     | exitmsg: OK
[2025-06-05 10:45:23] 2025-06-05 14:44:51,627 | INFO     | cpuconsumptiontime: 21773 s
[2025-06-05 10:45:23] 2025-06-05 14:44:51,627 | INFO     | nevents: 400
[2025-06-05 10:45:23] 2025-06-05 14:44:51,627 | INFO     | neventsw: 0
[2025-06-05 10:45:23] 2025-06-05 14:44:51,627 | INFO     | pid: 16413
[2025-06-05 10:45:23] 2025-06-05 14:44:51,627 | INFO     | pgrp: 16413
[2025-06-05 10:45:23] 2025-06-05 14:44:51,627 | INFO     | corecount: 8
[2025-06-05 10:45:23] 2025-06-05 14:44:51,627 | INFO     | event service: False
[2025-06-05 10:45:23] 2025-06-05 14:44:51,627 | INFO     | sizes: {0: 2397630, 4: 2397892, 11: 2397920, 2997: 2423368, 2998: 2432309, 3000: 2432365, 3003: 2432719}
[2025-06-05 10:45:23] 2025-06-05 14:44:51,627 | INFO     | --------------------------------------------------
[2025-06-05 10:45:23] 2025-06-05 14:44:51,627 | INFO     | 
[2025-06-05 10:45:23] 2025-06-05 14:44:51,627 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-05 10:45:23] 2025-06-05 14:44:51,644 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 10:45:23] 2025-06-05 14:44:51,644 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 10:45:23] 2025-06-05 14:44:51,644 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 10:45:23] 2025-06-05 14:44:51,645 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 10:45:23] 2025-06-05 14:44:51,645 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 10:45:23] 2025-06-05 14:44:51,645 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 10:45:23] 2025-06-05 14:44:51,645 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 10:45:23] 2025-06-05 14:44:51,645 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 10:45:23] 2025-06-05 14:44:51,645 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 10:45:23] 2025-06-05 14:44:51,645 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 10:45:23] 2025-06-05 14:44:51,645 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 10:45:23] 2025-06-05 14:44:51,645 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 10:45:23] 2025-06-05 14:44:51,645 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 10:45:23] 2025-06-05 14:44:51,645 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 10:45:23] 2025-06-05 14:44:51,645 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 10:45:23] 2025-06-05 14:44:51,645 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 10:45:23] 2025-06-05 14:44:51,645 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 10:45:23] 2025-06-05 14:44:51,645 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 10:45:23] 2025-06-05 14:44:51,645 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 10:45:23] 2025-06-05 14:44:51,645 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 10:45:23] 2025-06-05 14:44:51,645 | INFO     | job 6680798635 has completed (purged errors)
[2025-06-05 10:45:23] 2025-06-05 14:44:51,646 | INFO     | overall cleanup function is called
[2025-06-05 10:45:23] 2025-06-05 14:44:52,652 | INFO     | --- collectZombieJob: --- 10, [16413]
[2025-06-05 10:45:23] 2025-06-05 14:44:52,652 | INFO     | zombie collector waiting for pid 16413
[2025-06-05 10:45:23] 2025-06-05 14:44:52,653 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 10:45:23] 2025-06-05 14:44:52,653 | INFO     | collected zombie processes
[2025-06-05 10:45:23] 2025-06-05 14:44:52,653 | INFO     | will attempt to kill all subprocesses of pid=16413
[2025-06-05 10:45:23] 2025-06-05 14:44:52,760 | INFO     | process IDs to be killed: [16413] (in reverse order)
[2025-06-05 10:45:23] 2025-06-05 14:44:52,809 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 10:45:23] 2025-06-05 14:44:52,809 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 10:45:23] 2025-06-05 14:44:52,811 | INFO     | did not find any defunct processes belonging to 16413
[2025-06-05 10:45:23] 2025-06-05 14:44:52,812 | INFO     | did not find any defunct processes belonging to 16413
[2025-06-05 10:45:23] 2025-06-05 14:44:52,812 | INFO     | ready for new job
[2025-06-05 10:45:23] 2025-06-05 14:44:52,813 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 10:45:23] 2025-06-05 14:44:52,814 | INFO     | ***************************************
[2025-06-05 10:45:23] 2025-06-05 14:44:52,814 | INFO     | ***  PanDA Pilot version 3.10.3.82  ***
[2025-06-05 10:45:23] 2025-06-05 14:44:52,814 | INFO     | ***************************************
[2025-06-05 10:45:23] 2025-06-05 14:44:52,814 | INFO     | 
[2025-06-05 10:45:23] 2025-06-05 14:44:52,815 | INFO     | architecture information:
[2025-06-05 10:45:23] 2025-06-05 14:44:52,815 | INFO     | executing command: cat /etc/os-release
[2025-06-05 10:45:23] 2025-06-05 14:44:52,827 | INFO     | cat /etc/os-release:
[2025-06-05 10:45:23] NAME="CentOS Linux"
[2025-06-05 10:45:23] VERSION="7 (Core)"
[2025-06-05 10:45:23] ID="centos"
[2025-06-05 10:45:23] ID_LIKE="rhel fedora"
[2025-06-05 10:45:23] VERSION_ID="7"
[2025-06-05 10:45:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 10:45:23] ANSI_COLOR="0;31"
[2025-06-05 10:45:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 10:45:23] HOME_URL="https://www.centos.org/"
[2025-06-05 10:45:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 10:45:23] 
[2025-06-05 10:45:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 10:45:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 10:45:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 10:45:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 10:45:23] 
[2025-06-05 10:45:23] 2025-06-05 14:44:52,827 | INFO     | ***************************************
[2025-06-05 10:45:23] 2025-06-05 14:44:53,330 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-05 10:45:23] 2025-06-05 14:44:53,347 | INFO     | sufficient remaining disk space (32718716928 B)
[2025-06-05 10:45:23] 2025-06-05 14:44:53,347 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 10:45:23] 2025-06-05 14:44:53,347 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 10:45:23] 2025-06-05 14:44:53,348 | INFO     | update_server=False
[2025-06-05 10:45:23] 2025-06-05 14:44:53,348 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 10:45:23] 2025-06-05 14:44:53,348 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 10:45:23] 2025-06-05 14:44:53,348 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 10:45:23] 2025-06-05 14:44:53,349 | INFO     | aborting loop
[2025-06-05 10:45:23] 2025-06-05 14:44:53,506 | INFO     | all data control threads have been joined
[2025-06-05 10:45:23] 2025-06-05 14:44:54,125 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 10:45:23] 2025-06-05 14:44:54,313 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 10:45:23] 2025-06-05 14:44:54,326 | INFO     | all job control threads have been joined
[2025-06-05 10:45:23] 2025-06-05 14:44:54,352 | INFO     | [job] retrieve thread has finished
[2025-06-05 10:45:23] 2025-06-05 14:44:54,354 | INFO     | [job] queue monitor thread has finished
[2025-06-05 10:45:23] 2025-06-05 14:44:54,354 | INFO     | [job] job monitor thread has finished
[2025-06-05 10:45:23] 2025-06-05 14:44:54,512 | INFO     | [data] control thread has finished
[2025-06-05 10:45:23] 2025-06-05 14:44:54,610 | INFO     | all payload control threads have been joined
[2025-06-05 10:45:23] 2025-06-05 14:44:55,043 | INFO     | [data] copytool_in thread has finished
[2025-06-05 10:45:23] 2025-06-05 14:44:55,090 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 10:45:23] 2025-06-05 14:44:55,285 | INFO     | [payload] failed_post thread has finished
[2025-06-05 10:45:23] 2025-06-05 14:44:55,330 | INFO     | [job] control thread has finished
[2025-06-05 10:45:23] 2025-06-05 14:44:55,451 | INFO     | [job] validate thread has finished
[2025-06-05 10:45:23] 2025-06-05 14:44:55,452 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 10:45:23] 2025-06-05 14:44:55,525 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 10:45:23] 2025-06-05 14:44:55,612 | INFO     | [payload] control thread has finished
[2025-06-05 10:45:23] 2025-06-05 14:44:55,954 | INFO     | [payload] validate_post thread has finished
[2025-06-05 10:45:23] 2025-06-05 14:44:56,131 | INFO     | [data] copytool_out thread has finished
[2025-06-05 10:45:23] 2025-06-05 14:44:58,319 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 10:45:23] 2025-06-05 14:45:04,334 | INFO     | job.realtimelogging is not enabled
[2025-06-05 10:45:23] 2025-06-05 14:45:05,339 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 10:45:23] 2025-06-05 14:45:06,346 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140195512780608)>', '<ExcThread(monitor, started 140195080943360)>']
[2025-06-05 10:45:23] 2025-06-05 14:45:11,372 | INFO     | all workflow threads have been joined
[2025-06-05 10:45:23] 2025-06-05 14:45:11,372 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 10:45:23] 2025-06-05 14:45:11,372 | INFO     | traces error code: 0
[2025-06-05 10:45:23] 2025-06-05 14:45:11,373 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 10:45:23] 2025-06-05 14:45:23,004 | INFO     | PID=423 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2025-06-05 10:45:23] 2025-06-05 14:45:23,005 | INFO     | .. there are 2 such processes running
[2025-06-05 10:45:23] 2025-06-05 14:45:23,005 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 10:45:23] 2025-06-05 14:45:23,005 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 10:45:23] 2025-06-05 14:45:23,005 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 10:45:23] 2025-06-05 14:45:23,006 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 10:45:23] 2025-06-05 14:45:23,006 | INFO     | [monitor] control thread has ended
[2025-06-05 10:45:23] 2025-06-05 14:45:23,080 [wrapper] ==== pilot stdout END ====
[2025-06-05 10:45:23] 2025-06-05 14:45:23,083 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 10:45:23] 2025-06-05 14:45:23,086 [wrapper] pilotpid: 423
[2025-06-05 10:45:23] 2025-06-05 14:45:23,089 [wrapper] Pilot exit status: 0
[2025-06-05 10:45:23] 2025-06-05 14:45:23,099 [wrapper] pandaids: 6680798635
[2025-06-05 10:45:23] 2025-06-05 14:45:23,131 [wrapper] cleanup supervisor_pilot  8011 424
[2025-06-05 10:45:23] 2025-06-05 14:45:23,133 [wrapper] Test setup, not cleaning
[2025-06-05 10:45:23] 2025-06-05 14:45:23,136 [wrapper] apfmon messages muted
[2025-06-05 10:45:23] 2025-06-05 14:45:23,139 [wrapper] ==== wrapper stdout END ====
[2025-06-05 10:45:23] 2025-06-05 14:45:23,142 [wrapper] ==== wrapper stderr END ====
[2025-06-05 10:45:23]  *** Error codes and diagnostics ***
[2025-06-05 10:45:23]     "exeErrorCode": 0,
[2025-06-05 10:45:23]     "exeErrorDiag": "",
[2025-06-05 10:45:23]     "pilotErrorCode": 0,
[2025-06-05 10:45:23]     "pilotErrorDiag": "",
[2025-06-05 10:45:23]  *** Listing of results directory ***
[2025-06-05 10:45:23] total 393096
[2025-06-05 10:45:23] -rw-r--r-- 1 boincer umatlas    529402 Jun  5 09:09 pilot3.tar.gz
[2025-06-05 10:45:23] -rwx------ 1 boincer umatlas     37140 Jun  5 09:52 runpilot2-wrapper.sh
[2025-06-05 10:45:23] -rw-r--r-- 1 boincer umatlas      5112 Jun  5 09:52 queuedata.json
[2025-06-05 10:45:23] -rw-r--r-- 1 boincer umatlas       100 Jun  5 09:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 10:45:23] -rwxr-xr-x 1 boincer umatlas      7986 Jun  5 09:54 run_atlas
[2025-06-05 10:45:23] -rw-r--r-- 1 boincer umatlas       105 Jun  5 09:54 job.xml
[2025-06-05 10:45:23] -rw-r--r-- 2 boincer umatlas 214506365 Jun  5 09:54 EVNT.45006593._002118.pool.root.1
[2025-06-05 10:45:23] -rw-r--r-- 2 boincer umatlas     15095 Jun  5 09:54 start_atlas.sh
[2025-06-05 10:45:23] drwxrwx--x 2 boincer umatlas      4096 Jun  5 09:54 shared
[2025-06-05 10:45:23] -rw-r--r-- 2 boincer umatlas    541921 Jun  5 09:54 input.tar.gz
[2025-06-05 10:45:23] -rw-r--r-- 1 boincer umatlas         0 Jun  5 09:54 boinc_lockfile
[2025-06-05 10:45:23] -rw-r--r-- 1 boincer umatlas      2523 Jun  5 09:54 pandaJob.out
[2025-06-05 10:45:23] -rw------- 1 boincer umatlas    983210 Jun  5 09:54 agis_schedconf.cvmfs.json
[2025-06-05 10:45:23] -rw------- 1 boincer umatlas   1598969 Jun  5 09:54 agis_ddmendpoints.agis.ALL.json
[2025-06-05 10:45:23] drwx------ 4 boincer umatlas      4096 Jun  5 09:54 pilot3
[2025-06-05 10:45:23] -rw-r--r-- 1 boincer umatlas      6051 Jun  5 10:36 init_data.xml
[2025-06-05 10:45:23] -rw------- 1 boincer umatlas 182939869 Jun  5 10:44 HITS.45006595._057093.pool.root.1
[2025-06-05 10:45:23] -rw-r--r-- 1 boincer umatlas       529 Jun  5 10:44 boinc_task_state.xml
[2025-06-05 10:45:23] -rw------- 1 boincer umatlas      1038 Jun  5 10:44 memory_monitor_summary.json
[2025-06-05 10:45:23] -rw------- 1 boincer umatlas    277215 Jun  5 10:44 log.45006595._057093.job.log.tgz.1
[2025-06-05 10:45:23] -rw------- 1 boincer umatlas      7755 Jun  5 10:44 heartbeat.json
[2025-06-05 10:45:23] -rw-r--r-- 1 boincer umatlas        27 Jun  5 10:45 wrapper_checkpoint.txt
[2025-06-05 10:45:23] -rw-r--r-- 1 boincer umatlas      8192 Jun  5 10:45 boinc_mmap_file
[2025-06-05 10:45:23] -rw------- 1 boincer umatlas       818 Jun  5 10:45 pilotlog.txt
[2025-06-05 10:45:23] -rw------- 1 boincer umatlas        95 Jun  5 10:45 pilot_heartbeat.json
[2025-06-05 10:45:23] -rw------- 1 boincer umatlas    319837 Jun  5 10:45 log.45006595._057093.job.log.1
[2025-06-05 10:45:23] -rw------- 1 boincer umatlas       357 Jun  5 10:45 output.list
[2025-06-05 10:45:23] -rw-r--r-- 1 boincer umatlas       620 Jun  5 10:45 runtime_log
[2025-06-05 10:45:23] -rw------- 1 boincer umatlas    614400 Jun  5 10:45 result.tar.gz
[2025-06-05 10:45:23] -rw-r--r-- 1 boincer umatlas      8660 Jun  5 10:45 runtime_log.err
[2025-06-05 10:45:23] -rw------- 1 boincer umatlas       656 Jun  5 10:45 IXQNDmyBQh7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmg5nKDmyEAO5m.diag
[2025-06-05 10:45:23] -rw-r--r-- 1 boincer umatlas     21615 Jun  5 10:45 stderr.txt
[2025-06-05 10:45:23] HITS file was successfully produced:
[2025-06-05 10:45:23] -rw------- 1 boincer umatlas 182939869 Jun  5 10:44 shared/HITS.pool.root.1
[2025-06-05 10:45:23]  *** Contents of shared directory: ***
[2025-06-05 10:45:23] total 389288
[2025-06-05 10:45:23] -rw-r--r-- 2 boincer umatlas 214506365 Jun  5 09:54 ATLAS.root_0
[2025-06-05 10:45:23] -rw-r--r-- 2 boincer umatlas     15095 Jun  5 09:54 start_atlas.sh
[2025-06-05 10:45:23] -rw-r--r-- 2 boincer umatlas    541921 Jun  5 09:54 input.tar.gz
[2025-06-05 10:45:23] -rw------- 1 boincer umatlas 182939869 Jun  5 10:44 HITS.pool.root.1
[2025-06-05 10:45:23] -rw------- 1 boincer umatlas    614400 Jun  5 10:45 result.tar.gz
10:45:25 (27327): run_atlas exited; CPU time 21777.919478
10:45:25 (27327): called boinc_finish(0)

</stderr_txt>
]]>

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