Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-05 15:50:58 (2995945): Detected: vboxwrapper 26206
2025-06-05 15:50:58 (2995945): Detected: BOINC client v8.2.2
2025-06-05 15:50:59 (2995945): Detected: VirtualBox VboxManage Interface (Version: 7.0.20)
2025-06-05 15:50:59 (2995945): Successfully copied 'init_data.xml' to the shared directory.
2025-06-05 15:51:00 (2995945): Create VM. (boinc_cfb518c448a248b1, slot#50)
2025-06-05 15:51:00 (2995945): Setting Memory Size for VM. (4096MB)
2025-06-05 15:51:01 (2995945): Setting CPU Count for VM. (1)
2025-06-05 15:51:01 (2995945): Setting Chipset Options for VM.
2025-06-05 15:51:01 (2995945): Setting Graphics Controller Options for VM.
2025-06-05 15:51:02 (2995945): Setting Boot Options for VM.
2025-06-05 15:51:02 (2995945): Setting Network Configuration for NAT.
2025-06-05 15:51:02 (2995945): Enabling VM Network Access.
2025-06-05 15:51:02 (2995945): Disabling USB Support for VM.
2025-06-05 15:51:03 (2995945): Disabling COM Port Support for VM.
2025-06-05 15:51:03 (2995945): Disabling LPT Port Support for VM.
2025-06-05 15:51:03 (2995945): Disabling Audio Support for VM.
2025-06-05 15:51:04 (2995945): Disabling Clipboard Support for VM.
2025-06-05 15:51:04 (2995945): Disabling Drag and Drop Support for VM.
2025-06-05 15:51:04 (2995945): Adding storage controller(s) to VM.
2025-06-05 15:51:05 (2995945): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-05 15:51:05 (2995945): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-05 15:51:05 (2995945): forwarding host port 59025 to guest port 80
2025-06-05 15:51:06 (2995945): Enabling remote desktop for VM.
2025-06-05 15:51:06 (2995945): Enabling shared directory for VM.
2025-06-05 15:51:07 (2995945): Starting VM using VBoxManage interface. (boinc_cfb518c448a248b1, slot#50)
2025-06-05 15:51:08 (2995945): Successfully started VM. (PID = '2996405')
2025-06-05 15:51:08 (2995945): Reporting VM Process ID to BOINC.
2025-06-05 15:51:08 (2995945): Guest Log: BIOS: VirtualBox 7.0.20
2025-06-05 15:51:08 (2995945): Guest Log: CPUID EDX: 0x178bfbff
2025-06-05 15:51:08 (2995945): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-05 15:51:08 (2995945): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-05 15:51:08 (2995945): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-05 15:51:08 (2995945): Detected: Web Application Enabled (http://localhost:59025)
2025-06-05 15:51:08 (2995945): Detected: Remote Desktop Enabled (localhost:51601)
2025-06-05 15:51:08 (2995945): Preference change detected
2025-06-05 15:51:08 (2995945): Setting CPU throttle for VM. (100%)
2025-06-05 15:51:09 (2995945): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-05 15:51:10 (2995945): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-05 15:51:10 (2995945): Guest Log: BIOS: Booting from Hard Disk...
2025-06-05 15:51:14 (2995945): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-05 15:51:14 (2995945): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-05 15:51:14 (2995945): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-05 15:51:14 (2995945): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-05 15:51:14 (2995945): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-05 15:51:14 (2995945): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-05 15:51:14 (2995945): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-05 15:51:14 (2995945): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-05 15:51:14 (2995945): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-05 15:51:14 (2995945): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-05 15:51:14 (2995945): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-05 15:51:14 (2995945): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-05 15:51:14 (2995945): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-05 15:51:14 (2995945): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-05 15:51:14 (2995945): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-05 15:51:14 (2995945): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-05 15:51:14 (2995945): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-05 15:51:14 (2995945): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-05 15:51:14 (2995945): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-05 15:51:14 (2995945): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-05 15:51:14 (2995945): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-05 15:51:14 (2995945): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-05 15:51:14 (2995945): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-05 15:51:14 (2995945): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-05 15:51:14 (2995945): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-05 15:51:14 (2995945): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-05 15:51:14 (2995945): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-05 15:51:14 (2995945): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-05 15:51:14 (2995945): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-05 15:51:14 (2995945): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-05 15:51:14 (2995945): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-05 15:51:14 (2995945): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-05 15:51:20 (2995945): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-05 15:51:20 (2995945): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-05 15:51:37 (2995945): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-05 15:51:37 (2995945): Guest Log: 00:00:00.000268 main     Log opened 2025-06-05T13:51:35.074880000Z
2025-06-05 15:51:37 (2995945): Guest Log: 00:00:00.000440 main     OS Product: Linux
2025-06-05 15:51:37 (2995945): Guest Log: 00:00:00.000480 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-05 15:51:37 (2995945): Guest Log: 00:00:00.000507 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-05 15:51:37 (2995945): Guest Log: 00:00:00.000538 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-05 15:51:37 (2995945): Guest Log: 00:00:00.000539 main     Process ID: 1240
2025-06-05 15:51:37 (2995945): Guest Log: 00:00:00.000540 main     Package type: LINUX_64BITS_GENERIC
2025-06-05 15:51:37 (2995945): Guest Log: 00:00:00.006699 main     5.2.32 r132073 started. Verbose level = 0
2025-06-05 15:51:37 (2995945): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-05 15:51:37 (2995945): Guest Log: [INFO] Mounting shared directory
2025-06-05 15:51:37 (2995945): Guest Log: [INFO] Checking for init_data.xml
2025-06-05 15:51:40 (2995945): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-05 15:51:40 (2995945): Guest Log: [INFO] Detected branch: prod
2025-06-05 15:51:40 (2995945): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-05 15:51:40 (2995945): Guest Log: Copying input files
2025-06-05 15:51:42 (2995945): Guest Log: Copied input files into RunAtlas.
2025-06-05 15:51:42 (2995945): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2025-06-05 15:51:57 (2995945): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-05 15:51:57 (2995945): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-05 15:51:57 (2995945): Guest Log: 2.6.3.0 1509 0 31556 146820 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2025-06-05 15:51:58 (2995945): Guest Log: copied the webapp to /var/www
2025-06-05 15:51:58 (2995945): Guest Log: core_number=1
2025-06-05 15:51:58 (2995945): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-05 15:51:58 (2995945): Guest Log:  *** Starting ATLAS job. (PandaID=6668231828 taskID=44871837) ***
2025-06-05 17:30:09 (2995945): Status Report: Elapsed Time: '6000.000000'
2025-06-05 17:30:09 (2995945): Status Report: CPU Time: '5419.670000'
2025-06-05 19:09:10 (2995945): Status Report: Elapsed Time: '12000.000000'
2025-06-05 19:09:10 (2995945): Status Report: CPU Time: '11357.810000'
2025-06-05 20:48:10 (2995945): Status Report: Elapsed Time: '18000.000000'
2025-06-05 20:48:10 (2995945): Status Report: CPU Time: '17295.820000'
2025-06-05 22:27:11 (2995945): Status Report: Elapsed Time: '24000.000000'
2025-06-05 22:27:11 (2995945): Status Report: CPU Time: '23234.540000'
2025-06-06 00:06:11 (2995945): Status Report: Elapsed Time: '30000.000000'
2025-06-06 00:06:11 (2995945): Status Report: CPU Time: '29175.290000'
2025-06-06 01:45:12 (2995945): Status Report: Elapsed Time: '36000.000000'
2025-06-06 01:45:12 (2995945): Status Report: CPU Time: '35114.500000'
2025-06-06 03:24:12 (2995945): Status Report: Elapsed Time: '42000.000000'
2025-06-06 03:24:12 (2995945): Status Report: CPU Time: '41054.070000'
2025-06-06 05:03:13 (2995945): Status Report: Elapsed Time: '48000.000000'
2025-06-06 05:03:13 (2995945): Status Report: CPU Time: '46993.800000'
2025-06-06 06:42:13 (2995945): Status Report: Elapsed Time: '54000.000000'
2025-06-06 06:42:13 (2995945): Status Report: CPU Time: '52935.920000'
2025-06-06 08:21:14 (2995945): Status Report: Elapsed Time: '60000.000000'
2025-06-06 08:21:14 (2995945): Status Report: CPU Time: '58876.160000'
2025-06-06 10:00:14 (2995945): Status Report: Elapsed Time: '66000.000000'
2025-06-06 10:00:14 (2995945): Status Report: CPU Time: '64816.060000'
2025-06-06 11:39:15 (2995945): Status Report: Elapsed Time: '72000.000000'
2025-06-06 11:39:15 (2995945): Status Report: CPU Time: '70756.070000'
2025-06-06 12:48:40 (2995945): Guest Log:  *** Job finished ***
2025-06-06 12:48:40 (2995945): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-06 12:48:40 (2995945): Guest Log: 2025-06-06 10:45:18,297 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-06-06 12:48:40 (2995945): Guest Log: 2025-06-06 10:45:19,299 | INFO     | [job] queue monitor thread has finished
2025-06-06 12:48:40 (2995945): Guest Log: 2025-06-06 10:45:19,404 | INFO     | [data] queue_monitor thread has finished
2025-06-06 12:48:40 (2995945): Guest Log: 2025-06-06 10:45:20,360 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139971966310208)>', '<ExcThread(monitor, started 139971306452736)>']
2025-06-06 12:48:40 (2995945): Guest Log: 2025-06-06 10:45:20,885 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-06 12:48:40 (2995945): Guest Log: 2025-06-06 10:45:20,886 | INFO     | [monitor] control thread has ended
2025-06-06 12:48:40 (2995945): Guest Log: 2025-06-06 10:45:25,364 | INFO     | all workflow threads have been joined
2025-06-06 12:48:40 (2995945): Guest Log: 2025-06-06 10:45:25,364 | INFO     | end of generic workflow (traces error code: 0)
2025-06-06 12:48:40 (2995945): Guest Log: 2025-06-06 10:45:25,364 | INFO     | traces error code: 0
2025-06-06 12:48:40 (2995945): Guest Log: 2025-06-06 10:45:25,365 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-06 12:48:40 (2995945): Guest Log: 2025-06-06 10:45:25,533 [wrapper] ==== pilot stdout END ====
2025-06-06 12:48:40 (2995945): Guest Log: 2025-06-06 10:45:25,538 [wrapper] ==== wrapper stdout RESUME ====
2025-06-06 12:48:40 (2995945): Guest Log: 2025-06-06 10:45:25,543 [wrapper] pilotpid: 5768
2025-06-06 12:48:40 (2995945): Guest Log: 2025-06-06 10:45:25,547 [wrapper] Pilot exit status: 0
2025-06-06 12:48:40 (2995945): Guest Log: 2025-06-06 10:45:25,574 [wrapper] pandaids: 6668231828
2025-06-06 12:48:40 (2995945): Guest Log: 2025-06-06 10:45:25,603 [wrapper] cleanup supervisor_pilot 14126 5769
2025-06-06 12:48:40 (2995945): Guest Log: 2025-06-06 10:45:25,609 [wrapper] Test setup, not cleaning
2025-06-06 12:48:40 (2995945): Guest Log: 2025-06-06 10:45:25,614 [wrapper] apfmon messages muted
2025-06-06 12:48:40 (2995945): Guest Log: 2025-06-06 10:45:25,620 [wrapper] ==== wrapper stdout END ====
2025-06-06 12:48:40 (2995945): Guest Log: 2025-06-06 10:45:25,625 [wrapper] ==== wrapper stderr END ====
2025-06-06 12:48:40 (2995945): Guest Log:  *** Error codes and diagnostics ***
2025-06-06 12:48:40 (2995945): Guest Log:     "exeErrorCode": 0,
2025-06-06 12:48:40 (2995945): Guest Log:     "exeErrorDiag": "",
2025-06-06 12:48:40 (2995945): Guest Log:     "pilotErrorCode": 0,
2025-06-06 12:48:40 (2995945): Guest Log:     "pilotErrorDiag": "",
2025-06-06 12:48:40 (2995945): Guest Log:  *** Listing of results directory ***
2025-06-06 12:48:40 (2995945): Guest Log: total 210688
2025-06-06 12:48:40 (2995945): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 28 08:01 pilot3.tar.gz
2025-06-06 12:48:40 (2995945): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 28 08:03 queuedata.json
2025-06-06 12:48:40 (2995945): Guest Log: -rwx------. 1 atlas atlas     37140 May 28 08:04 runpilot2-wrapper.sh
2025-06-06 12:48:40 (2995945): Guest Log: -rw-r--r--. 1 atlas atlas     15093 Jun  5 13:51 start_atlas.sh
2025-06-06 12:48:40 (2995945): Guest Log: -rw-r--r--. 1 atlas atlas      9672 Jun  5 13:51 init_data.xml
2025-06-06 12:48:40 (2995945): Guest Log: -rw-r--r--. 1 atlas atlas    508880 Jun  5 13:51 input.tar.gz
2025-06-06 12:48:40 (2995945): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  5 13:51 EVNT.44871834._003163.pool.root.1 -> /data/./ATLAS.root_0
2025-06-06 12:48:40 (2995945): Guest Log: -rw-r--r--. 1 atlas atlas      2559 Jun  5 13:51 pandaJob.out
2025-06-06 12:48:40 (2995945): Guest Log: -rw-------. 1 atlas atlas    983210 Jun  5 13:52 agis_schedconf.cvmfs.json
2025-06-06 12:48:40 (2995945): Guest Log: drwx------. 4 atlas atlas      4096 Jun  5 13:52 pilot3
2025-06-06 12:48:40 (2995945): Guest Log: -rw-------. 1 atlas atlas 197454081 Jun  6 10:44 HITS.44871837._081007.pool.root.1
2025-06-06 12:48:40 (2995945): Guest Log: -rw-------. 1 atlas atlas      1026 Jun  6 10:44 memory_monitor_summary.json
2025-06-06 12:48:40 (2995945): Guest Log: -rw-------. 1 atlas atlas        95 Jun  6 10:44 pilot_heartbeat.json
2025-06-06 12:48:40 (2995945): Guest Log: -rw-------. 1 atlas atlas   1598969 Jun  6 10:45 agis_ddmendpoints.agis.ALL.json
2025-06-06 12:48:40 (2995945): Guest Log: -rw-------. 1 atlas atlas    796526 Jun  6 10:45 log.44871837._081007.job.log.tgz.1
2025-06-06 12:48:40 (2995945): Guest Log: -rw-------. 1 atlas atlas      7728 Jun  6 10:45 heartbeat.json
2025-06-06 12:48:40 (2995945): Guest Log: -rw-------. 1 atlas atlas      4413 Jun  6 10:45 pilotlog.txt
2025-06-06 12:48:40 (2995945): Guest Log: -rw-------. 1 atlas atlas   6466351 Jun  6 10:45 log.44871837._081007.job.log.1
2025-06-06 12:48:40 (2995945): Guest Log: -rw-------. 1 atlas atlas       357 Jun  6 10:45 output.list
2025-06-06 12:48:40 (2995945): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  6 10:45 runtime_log
2025-06-06 12:48:40 (2995945): Guest Log: -rw-------. 1 atlas atlas   7280640 Jun  6 10:45 result.tar.gz
2025-06-06 12:48:40 (2995945): Guest Log: -rw-r--r--. 1 atlas atlas      8472 Jun  6 10:45 runtime_log.err
2025-06-06 12:48:40 (2995945): Guest Log: -rw-------. 1 atlas atlas       657 Jun  6 10:45 MPfNDmUxQe7n9Rq4apOajLDm4fhM0noT9bVof3QYDmDBTKDmrzoYMn.diag
2025-06-06 12:48:40 (2995945): Guest Log: Looking for outputfile HITS.44871837._081007.pool.root.1
2025-06-06 12:48:40 (2995945): Guest Log: HITS file was successfully produced
2025-06-06 12:48:40 (2995945): Guest Log: -rw-------. 1 atlas atlas 197454081 Jun  6 10:44 /home/atlas/RunAtlas/HITS.44871837._081007.pool.root.1
2025-06-06 12:48:40 (2995945): Guest Log: Successfully finished the ATLAS job!
2025-06-06 12:48:40 (2995945): Guest Log: Copying the results back to the shared directory!
2025-06-06 12:48:40 (2995945): Guest Log:  *** Contents of shared directory: ***
2025-06-06 12:48:40 (2995945): Guest Log: total 225600
2025-06-06 12:48:40 (2995945): Guest Log: -rw-r--r--. 1 root root 223186664 Jun  5 13:50 ATLAS.root_0
2025-06-06 12:48:40 (2995945): Guest Log: -rw-r--r--. 1 root root      9672 Jun  5 13:50 init_data.xml
2025-06-06 12:48:40 (2995945): Guest Log: -rw-r--r--. 1 root root    508880 Jun  5 13:50 input.tar.gz
2025-06-06 12:48:40 (2995945): Guest Log: -rw-r--r--. 1 root root   7280640 Jun  6  2025 result.tar.gz
2025-06-06 12:48:40 (2995945): Guest Log: -rw-r--r--. 1 root root     15093 Jun  5 13:50 start_atlas.sh
2025-06-06 12:48:40 (2995945): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-06 12:48:40 (2995945): VM Completion File Detected.
2025-06-06 12:48:40 (2995945): Powering off VM.
2025-06-06 12:48:41 (2995945): Successfully stopped VM.
2025-06-06 12:48:41 (2995945): Deregistering VM. (boinc_cfb518c448a248b1, slot#50)
2025-06-06 12:48:41 (2995945): Removing network bandwidth throttle group from VM.
2025-06-06 12:48:42 (2995945): Removing VM from VirtualBox.
12:48:47 (2995945): called boinc_finish(0)

</stderr_txt>
]]>

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