Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:44:32 (26055): wrapper (7.7.26015): starting
15:44:32 (26055): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 15:44:32] Arguments: --nthreads 8
[2025-06-05 15:44:32] Threads: 8
[2025-06-05 15:44:32] Checking for CVMFS
[2025-06-05 15:44:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 15:44:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 15:44:32] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 15:44:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 15:44:33] 2.11.2.0 3966 34712 95032 146820 2 159 18810638 25165824 3411 130560 0 19044449 99.796 20647569 2170 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 15:44:33] CVMFS is ok
[2025-06-05 15:44:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 15:44:33] Checking for apptainer binary...
[2025-06-05 15:44:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 15:44:33] Running /usr/bin/apptainer --version
[2025-06-05 15:44:33] apptainer version 1.3.2-1.el7
[2025-06-05 15:44:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 15:44:34] cg-vwn439.simple-grid.lan
[2025-06-05 15:44:34] apptainer works
[2025-06-05 15:44:34] Set ATHENA_PROC_NUMBER=8
[2025-06-05 15:44:34] Set ATHENA_CORE_NUMBER=8
[2025-06-05 15:44:34] Starting ATLAS job with PandaID=6668229976
[2025-06-05 15:44:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 20:49:37]  *** The last 200 lines of the pilot log: ***
[2025-06-05 20:49:37] 2025-06-05 18:41:39,410 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6668229976/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 20:49:37] 2025-06-05 18:41:39,411 | INFO     | extracted standard info from prmon json
[2025-06-05 20:49:37] 2025-06-05 18:41:39,411 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 20:49:37] 2025-06-05 18:41:39,411 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 20:49:37] 2025-06-05 18:41:39,412 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 20:49:37] 2025-06-05 18:41:39,412 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 20:49:37] 2025-06-05 18:41:39,418 | INFO     | fitting pss+swap vs Time
[2025-06-05 20:49:37] 2025-06-05 18:41:39,419 | INFO     | sum of square deviations: 7562532492.5
[2025-06-05 20:49:37] 2025-06-05 18:41:39,422 | INFO     | sum of deviations: 13474379883.500008
[2025-06-05 20:49:37] 2025-06-05 18:41:39,422 | INFO     | mean x: 1749139961.5
[2025-06-05 20:49:37] 2025-06-05 18:41:39,422 | INFO     | mean y: 2482913.9689655174
[2025-06-05 20:49:37] 2025-06-05 18:41:39,422 | INFO     | -- intersect: -3114009654.365157
[2025-06-05 20:49:37] 2025-06-05 18:41:39,422 | INFO     | intersect: -3114009654.365157
[2025-06-05 20:49:37] 2025-06-05 18:41:39,423 | INFO     | chi2: 2.4894050994290073
[2025-06-05 20:49:37] 2025-06-05 18:41:39,424 | INFO     | sum of square deviations: 7178069470.0
[2025-06-05 20:49:37] 2025-06-05 18:41:39,426 | INFO     | sum of deviations: 32357301099.000004
[2025-06-05 20:49:37] 2025-06-05 18:41:39,427 | INFO     | mean x: 1749139809.0
[2025-06-05 20:49:37] 2025-06-05 18:41:39,427 | INFO     | mean y: 2490297.7087719296
[2025-06-05 20:49:37] 2025-06-05 18:41:39,427 | INFO     | -- intersect: -7882282021.729419
[2025-06-05 20:49:37] 2025-06-05 18:41:39,427 | INFO     | intersect: -7882282021.729419
[2025-06-05 20:49:37] 2025-06-05 18:41:39,428 | INFO     | chi2: 1.718955643258026
[2025-06-05 20:49:37] 2025-06-05 18:41:39,428 | INFO     | current chi2=1.718955643258026 (change=30.949139469012042 %)
[2025-06-05 20:49:37] 2025-06-05 18:41:39,428 | INFO     | sum of square deviations: 6806862510.0
[2025-06-05 20:49:37] 2025-06-05 18:41:39,431 | INFO     | sum of deviations: 31754817275.000004
[2025-06-05 20:49:37] 2025-06-05 18:41:39,431 | INFO     | mean x: 1749139656.5
[2025-06-05 20:49:37] 2025-06-05 18:41:39,431 | INFO     | mean y: 2490050.1714285715
[2025-06-05 20:49:37] 2025-06-05 18:41:39,431 | INFO     | -- intersect: -8157452963.076503
[2025-06-05 20:49:37] 2025-06-05 18:41:39,431 | INFO     | intersect: -8157452963.076503
[2025-06-05 20:49:37] 2025-06-05 18:41:39,432 | INFO     | chi2: 1.719637659991547
[2025-06-05 20:49:37] 2025-06-05 18:41:39,432 | INFO     | current chi2=1.719637659991547 (change=-0.03967622644575185 %)
[2025-06-05 20:49:37] 2025-06-05 18:41:39,432 | INFO     | right removable region: 279
[2025-06-05 20:49:37] 2025-06-05 18:41:39,433 | INFO     | sum of square deviations: 7178069470.0
[2025-06-05 20:49:37] 2025-06-05 18:41:39,435 | INFO     | sum of deviations: -36260898621.0
[2025-06-05 20:49:37] 2025-06-05 18:41:39,436 | INFO     | mean x: 1749140114.0
[2025-06-05 20:49:37] 2025-06-05 18:41:39,436 | INFO     | mean y: 2502510.898245614
[2025-06-05 20:49:37] 2025-06-05 18:41:39,436 | INFO     | -- intersect: 8838498402.656921
[2025-06-05 20:49:37] 2025-06-05 18:41:39,436 | INFO     | intersect: 8838498402.656921
[2025-06-05 20:49:37] 2025-06-05 18:41:39,436 | INFO     | chi2: 0.9025627011889936
[2025-06-05 20:49:37] 2025-06-05 18:41:39,436 | INFO     | current chi2=0.9025627011889936 (change=63.743839787424974 %)
[2025-06-05 20:49:37] 2025-06-05 18:41:39,437 | INFO     | sum of square deviations: 6806862510.0
[2025-06-05 20:49:37] 2025-06-05 18:41:39,439 | INFO     | sum of deviations: -32634779515.500004
[2025-06-05 20:49:37] 2025-06-05 18:41:39,440 | INFO     | mean x: 1749140266.5
[2025-06-05 20:49:37] 2025-06-05 18:41:39,440 | INFO     | mean y: 2500999.160714286
[2025-06-05 20:49:37] 2025-06-05 18:41:39,440 | INFO     | -- intersect: 8388568273.921992
[2025-06-05 20:49:37] 2025-06-05 18:41:39,440 | INFO     | intersect: 8388568273.921992
[2025-06-05 20:49:37] 2025-06-05 18:41:39,441 | INFO     | chi2: 0.8852506395428641
[2025-06-05 20:49:37] 2025-06-05 18:41:39,441 | INFO     | current chi2=0.8852506395428641 (change=1.9181007173599611 %)
[2025-06-05 20:49:37] 2025-06-05 18:41:39,441 | INFO     | left removable region: 20
[2025-06-05 20:49:37] 2025-06-05 18:41:39,441 | INFO     | sum of square deviations: 5387301010.0
[2025-06-05 20:49:37] 2025-06-05 18:41:39,443 | INFO     | sum of deviations: 5686293302.999998
[2025-06-05 20:49:37] 2025-06-05 18:41:39,444 | INFO     | mean x: 1749140236.0
[2025-06-05 20:49:37] 2025-06-05 18:41:39,444 | INFO     | mean y: 2500106.505791506
[2025-06-05 20:49:37] 2025-06-05 18:41:39,444 | INFO     | -- intersect: -1843716466.7861912
[2025-06-05 20:49:37] 2025-06-05 18:41:39,444 | INFO     | intersect: -1843716466.7861912
[2025-06-05 20:49:37] 2025-06-05 18:41:39,445 | INFO     | chi2: 0.013089075190594473
[2025-06-05 20:49:37] 2025-06-05 18:41:39,445 | INFO     | -- intersect: -1843716466.7861912
[2025-06-05 20:49:37] 2025-06-05 18:41:39,445 | INFO     | current memory leak: 1.06 B/s (using 259 data points, chi2=0.01)
[2025-06-05 20:49:37] 2025-06-05 18:41:39,446 | INFO     | ..............................
[2025-06-05 20:49:37] 2025-06-05 18:41:39,446 | INFO     | . Timing measurements:
[2025-06-05 20:49:37] 2025-06-05 18:41:39,446 | INFO     | . get job = 0 s
[2025-06-05 20:49:37] 2025-06-05 18:41:39,446 | INFO     | . initial setup = 2 s
[2025-06-05 20:49:37] 2025-06-05 18:41:39,446 | INFO     | . payload setup = 13 s
[2025-06-05 20:49:37] 2025-06-05 18:41:39,447 | INFO     | . stage-in = 0 s
[2025-06-05 20:49:37] 2025-06-05 18:41:39,447 | INFO     | . payload execution = 17680 s
[2025-06-05 20:49:37] 2025-06-05 18:41:39,447 | INFO     | . stage-out = 4 s
[2025-06-05 20:49:37] 2025-06-05 18:41:39,447 | INFO     | . log creation = 1 s
[2025-06-05 20:49:37] 2025-06-05 18:41:39,447 | INFO     | ..............................
[2025-06-05 20:49:37] 2025-06-05 18:41:39,713 | INFO     | 
[2025-06-05 20:49:37] 2025-06-05 18:41:39,713 | INFO     | job summary report
[2025-06-05 20:49:37] 2025-06-05 18:41:39,714 | INFO     | --------------------------------------------------
[2025-06-05 20:49:37] 2025-06-05 18:41:39,714 | INFO     | PanDA job id: 6668229976
[2025-06-05 20:49:37] 2025-06-05 18:41:39,714 | INFO     | task id: 44871837
[2025-06-05 20:49:37] 2025-06-05 18:41:39,714 | INFO     | errors: (none)
[2025-06-05 20:49:37] 2025-06-05 18:41:39,714 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 20:49:37] 2025-06-05 18:41:39,714 | INFO     | pilot state: finished 
[2025-06-05 20:49:37] 2025-06-05 18:41:39,714 | INFO     | transexitcode: 0
[2025-06-05 20:49:37] 2025-06-05 18:41:39,714 | INFO     | exeerrorcode: 0
[2025-06-05 20:49:37] 2025-06-05 18:41:39,714 | INFO     | exeerrordiag: 
[2025-06-05 20:49:37] 2025-06-05 18:41:39,714 | INFO     | exitcode: 0
[2025-06-05 20:49:37] 2025-06-05 18:41:39,715 | INFO     | exitmsg: OK
[2025-06-05 20:49:37] 2025-06-05 18:41:39,715 | INFO     | cpuconsumptiontime: 68292 s
[2025-06-05 20:49:37] 2025-06-05 18:41:39,715 | INFO     | nevents: 400
[2025-06-05 20:49:37] 2025-06-05 18:41:39,715 | INFO     | neventsw: 0
[2025-06-05 20:49:37] 2025-06-05 18:41:39,715 | INFO     | pid: 3884
[2025-06-05 20:49:37] 2025-06-05 18:41:39,715 | INFO     | pgrp: 3884
[2025-06-05 20:49:37] 2025-06-05 18:41:39,715 | INFO     | corecount: 8
[2025-06-05 20:49:37] 2025-06-05 18:41:39,715 | INFO     | event service: False
[2025-06-05 20:49:37] 2025-06-05 18:41:39,715 | INFO     | sizes: {0: 2397221, 1: 2397420, 9: 2397626, 12: 2397654, 17699: 2428832, 17703: 2437773, 17705: 2437957, 17787: 2438127}
[2025-06-05 20:49:37] 2025-06-05 18:41:39,715 | INFO     | --------------------------------------------------
[2025-06-05 20:49:37] 2025-06-05 18:41:39,715 | INFO     | 
[2025-06-05 20:49:37] 2025-06-05 18:41:39,716 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-06-05 20:49:37] 2025-06-05 18:41:39,767 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 20:49:37] 2025-06-05 18:41:39,767 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 20:49:37] 2025-06-05 18:41:39,767 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 20:49:37] 2025-06-05 18:41:39,767 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 20:49:37] 2025-06-05 18:41:39,767 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 20:49:37] 2025-06-05 18:41:39,768 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 20:49:37] 2025-06-05 18:41:39,768 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 20:49:37] 2025-06-05 18:41:39,768 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 20:49:37] 2025-06-05 18:41:39,768 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 20:49:37] 2025-06-05 18:41:39,768 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 20:49:37] 2025-06-05 18:41:39,768 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 20:49:37] 2025-06-05 18:41:39,768 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 20:49:37] 2025-06-05 18:41:39,768 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 20:49:37] 2025-06-05 18:41:39,768 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 20:49:37] 2025-06-05 18:41:39,769 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 20:49:37] 2025-06-05 18:41:39,769 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 20:49:37] 2025-06-05 18:41:39,769 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 20:49:37] 2025-06-05 18:41:39,769 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 20:49:37] 2025-06-05 18:41:39,769 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 20:49:37] 2025-06-05 18:41:39,769 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 20:49:37] 2025-06-05 18:41:39,769 | INFO     | job 6668229976 has completed (purged errors)
[2025-06-05 20:49:37] 2025-06-05 18:41:39,769 | INFO     | overall cleanup function is called
[2025-06-05 20:49:37] 2025-06-05 18:41:40,779 | INFO     | --- collectZombieJob: --- 10, [3884]
[2025-06-05 20:49:37] 2025-06-05 18:41:40,779 | INFO     | zombie collector waiting for pid 3884
[2025-06-05 20:49:37] 2025-06-05 18:41:40,780 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 20:49:37] 2025-06-05 18:41:40,780 | INFO     | collected zombie processes
[2025-06-05 20:49:37] 2025-06-05 18:41:40,780 | INFO     | will attempt to kill all subprocesses of pid=3884
[2025-06-05 20:49:37] 2025-06-05 18:41:40,885 | INFO     | process IDs to be killed: [3884] (in reverse order)
[2025-06-05 20:49:37] 2025-06-05 18:41:41,788 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 20:49:37] 2025-06-05 18:41:41,789 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 20:49:37] 2025-06-05 18:41:41,793 | INFO     | did not find any defunct processes belonging to 3884
[2025-06-05 20:49:37] 2025-06-05 18:41:41,797 | INFO     | did not find any defunct processes belonging to 3884
[2025-06-05 20:49:37] 2025-06-05 18:41:41,798 | INFO     | ready for new job
[2025-06-05 20:49:37] 2025-06-05 18:41:41,798 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 20:49:37] 2025-06-05 18:41:41,802 | INFO     | **************************************
[2025-06-05 20:49:37] 2025-06-05 18:41:41,802 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 20:49:37] 2025-06-05 18:41:41,802 | INFO     | **************************************
[2025-06-05 20:49:37] 2025-06-05 18:41:41,802 | INFO     | 
[2025-06-05 20:49:37] 2025-06-05 18:41:41,803 | INFO     | pilot is running in a VM
[2025-06-05 20:49:37] 2025-06-05 18:41:41,803 | INFO     | architecture information:
[2025-06-05 20:49:37] 2025-06-05 18:41:41,812 | INFO     | executing command: cat /etc/os-release
[2025-06-05 20:49:37] 2025-06-05 18:41:42,001 | INFO     | cat /etc/os-release:
[2025-06-05 20:49:37] NAME="CentOS Linux"
[2025-06-05 20:49:37] VERSION="7 (Core)"
[2025-06-05 20:49:37] ID="centos"
[2025-06-05 20:49:37] ID_LIKE="rhel fedora"
[2025-06-05 20:49:37] VERSION_ID="7"
[2025-06-05 20:49:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 20:49:37] ANSI_COLOR="0;31"
[2025-06-05 20:49:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 20:49:37] HOME_URL="https://www.centos.org/"
[2025-06-05 20:49:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 20:49:37] 
[2025-06-05 20:49:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 20:49:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 20:49:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 20:49:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 20:49:37] 
[2025-06-05 20:49:37] 2025-06-05 18:41:42,001 | INFO     | **************************************
[2025-06-05 20:49:37] 2025-06-05 18:41:42,505 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-06-05 20:49:37] 2025-06-05 18:41:42,810 | INFO     | sufficient remaining disk space (497241030656 B)
[2025-06-05 20:49:37] 2025-06-05 18:41:42,810 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 20:49:37] 2025-06-05 18:41:42,811 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 20:49:37] 2025-06-05 18:41:42,811 | INFO     | update_server=False
[2025-06-05 20:49:37] 2025-06-05 18:41:42,811 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 20:49:37] 2025-06-05 18:41:42,812 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 20:49:37] 2025-06-05 18:41:42,813 | INFO     | aborting loop
[2025-06-05 20:49:37] 2025-06-05 18:41:42,813 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 20:49:37] 2025-06-05 18:41:42,914 | INFO     | all job control threads have been joined
[2025-06-05 20:49:37] 2025-06-05 18:41:43,318 | INFO     | all payload control threads have been joined
[2025-06-05 20:49:37] 2025-06-05 18:41:43,343 | INFO     | all data control threads have been joined
[2025-06-05 20:49:37] 2025-06-05 18:41:43,471 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 20:49:37] 2025-06-05 18:41:43,472 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 20:49:37] 2025-06-05 18:41:43,472 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 20:49:37] 2025-06-05 18:41:43,817 | INFO     | [job] retrieve thread has finished
[2025-06-05 20:49:37] 2025-06-05 18:41:43,818 | INFO     | [job] job monitor thread has finished
[2025-06-05 20:49:37] 2025-06-05 18:41:43,920 | INFO     | [job] control thread has finished
[2025-06-05 20:49:37] 2025-06-05 18:41:44,096 | INFO     | [payload] failed_post thread has finished
[2025-06-05 20:49:37] 2025-06-05 18:41:44,145 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 20:49:37] 2025-06-05 18:41:44,324 | INFO     | [payload] control thread has finished
[2025-06-05 20:49:37] 2025-06-05 18:41:44,329 | INFO     | [payload] validate_post thread has finished
[2025-06-05 20:49:37] 2025-06-05 18:41:44,349 | INFO     | [data] control thread has finished
[2025-06-05 20:49:37] 2025-06-05 18:41:44,353 | INFO     | [data] copytool_in thread has finished
[2025-06-05 20:49:37] 2025-06-05 18:41:44,416 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 20:49:37] 2025-06-05 18:41:44,587 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 20:49:37] 2025-06-05 18:41:44,607 | INFO     | [job] validate thread has finished
[2025-06-05 20:49:37] 2025-06-05 18:41:44,738 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 20:49:37] 2025-06-05 18:41:44,760 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 20:49:37] 2025-06-05 18:41:44,820 | INFO     | [data] copytool_out thread has finished
[2025-06-05 20:49:37] 2025-06-05 18:41:45,092 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 20:49:37] 2025-06-05 18:41:45,593 | INFO     | [job] queue monitor thread has finished
[2025-06-05 20:49:37] 2025-06-05 18:41:48,770 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 20:49:37] 2025-06-05 18:41:49,456 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139922940806976)>', '<ExcThread(monitor, started 139922509915904)>']
[2025-06-05 20:49:37] 2025-06-05 18:41:49,507 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 20:49:37] 2025-06-05 18:41:49,507 | INFO     | [monitor] control thread has ended
[2025-06-05 20:49:37] 2025-06-05 18:41:54,481 | INFO     | all workflow threads have been joined
[2025-06-05 20:49:37] 2025-06-05 18:41:54,481 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 20:49:37] 2025-06-05 18:41:54,482 | INFO     | traces error code: 0
[2025-06-05 20:49:37] 2025-06-05 18:41:54,482 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 20:49:37] 2025-06-05 18:41:54,833 [wrapper] ==== pilot stdout END ====
[2025-06-05 20:49:37] 2025-06-05 18:41:54,840 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 20:49:37] 2025-06-05 18:41:54,850 [wrapper] pilotpid: 29718
[2025-06-05 20:49:37] 2025-06-05 18:41:54,853 [wrapper] Pilot exit status: 0
[2025-06-05 20:49:37] 2025-06-05 18:41:55,469 [wrapper] pandaids: 6668229976
[2025-06-05 20:49:37] 2025-06-05 18:41:56,597 [wrapper] cleanup supervisor_pilot  5897 29719
[2025-06-05 20:49:37] 2025-06-05 18:41:56,711 [wrapper] Test setup, not cleaning
[2025-06-05 20:49:37] 2025-06-05 18:41:56,819 [wrapper] apfmon messages muted
[2025-06-05 20:49:37] 2025-06-05 18:41:56,933 [wrapper] ==== wrapper stdout END ====
[2025-06-05 20:49:37] 2025-06-05 18:41:57,042 [wrapper] ==== wrapper stderr END ====
[2025-06-05 20:49:37]  *** Error codes and diagnostics ***
[2025-06-05 20:49:37]     "exeErrorCode": 0,
[2025-06-05 20:49:37]     "exeErrorDiag": "",
[2025-06-05 20:49:37]     "pilotErrorCode": 0,
[2025-06-05 20:49:37]     "pilotErrorDiag": "",
[2025-06-05 20:49:37]  *** Listing of results directory ***
[2025-06-05 20:49:37] total 417236
[2025-06-05 20:49:37] -rw-r--r--. 1 boinc boinc      5111 May 28 09:37 queuedata.json
[2025-06-05 20:49:37] -rwx------. 1 boinc boinc     37140 May 28 09:38 runpilot2-wrapper.sh
[2025-06-05 20:49:37] -rw-r--r--. 1 boinc boinc    495897 May 28 09:38 pilot3.tar.gz
[2025-06-05 20:49:37] -rw-r--r--. 1 boinc boinc       100 Jun  5 15:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 20:49:37] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 15:44 run_atlas
[2025-06-05 20:49:37] -rw-r--r--. 1 boinc boinc       105 Jun  5 15:44 job.xml
[2025-06-05 20:49:37] -rw-r--r--. 1 boinc boinc      6392 Jun  5 15:44 init_data.xml
[2025-06-05 20:49:37] -rw-r--r--. 2 boinc boinc 226706974 Jun  5 15:44 EVNT.44871834._003152.pool.root.1
[2025-06-05 20:49:37] -rw-r--r--. 2 boinc boinc     15093 Jun  5 15:44 start_atlas.sh
[2025-06-05 20:49:37] drwxrwx--x. 2 boinc boinc        68 Jun  5 15:44 shared
[2025-06-05 20:49:37] -rw-r--r--. 2 boinc boinc    508877 Jun  5 15:44 input.tar.gz
[2025-06-05 20:49:37] -rw-r--r--. 1 boinc boinc         0 Jun  5 15:44 boinc_lockfile
[2025-06-05 20:49:37] -rw-r--r--. 1 boinc boinc      2559 Jun  5 15:44 pandaJob.out
[2025-06-05 20:49:37] -rw-------. 1 boinc boinc    983210 Jun  5 15:44 agis_schedconf.cvmfs.json
[2025-06-05 20:49:37] drwx------. 4 boinc boinc      4096 Jun  5 15:44 pilot3
[2025-06-05 20:49:37] -rw-------. 1 boinc boinc 192869464 Jun  5 20:38 HITS.44871837._080734.pool.root.1
[2025-06-05 20:49:37] -rw-r--r--. 1 boinc boinc       531 Jun  5 20:39 boinc_task_state.xml
[2025-06-05 20:49:37] -rw-------. 1 boinc boinc      1014 Jun  5 20:40 memory_monitor_summary.json
[2025-06-05 20:49:37] -rw-------. 1 boinc boinc   1598969 Jun  5 20:40 agis_ddmendpoints.agis.ALL.json
[2025-06-05 20:49:37] -rw-------. 1 boinc boinc    411708 Jun  5 20:40 log.44871837._080734.job.log.tgz.1
[2025-06-05 20:49:37] -rw-------. 1 boinc boinc        95 Jun  5 20:40 pilot_heartbeat.json
[2025-06-05 20:49:37] -rw-------. 1 boinc boinc      7683 Jun  5 20:41 heartbeat.json
[2025-06-05 20:49:37] -rw-------. 1 boinc boinc      4416 Jun  5 20:41 pilotlog.txt
[2025-06-05 20:49:37] -rw-------. 1 boinc boinc   1518601 Jun  5 20:41 log.44871837._080734.job.log.1
[2025-06-05 20:49:37] -rw-------. 1 boinc boinc       357 Jun  5 20:41 output.list
[2025-06-05 20:49:37] -rw-r--r--. 1 boinc boinc       620 Jun  5 20:41 runtime_log
[2025-06-05 20:49:37] -rw-------. 1 boinc boinc   1945600 Jun  5 20:41 result.tar.gz
[2025-06-05 20:49:37] -rw-r--r--. 1 boinc boinc      8659 Jun  5 20:41 runtime_log.err
[2025-06-05 20:49:37] -rw-------. 1 boinc boinc       657 Jun  5 20:41 bSXKDmPYQe7n9Rq4apOajLDm4fhM0noT9bVof3QYDmXATKDmyKq16m.diag
[2025-06-05 20:49:37] -rw-r--r--. 1 boinc boinc      8192 Jun  5 20:49 boinc_mmap_file
[2025-06-05 20:49:37] -rw-r--r--. 1 boinc boinc        28 Jun  5 20:49 wrapper_checkpoint.txt
[2025-06-05 20:49:37] -rw-r--r--. 1 boinc boinc     20488 Jun  5 20:49 stderr.txt
[2025-06-05 20:49:37] HITS file was successfully produced:
[2025-06-05 20:49:37] -rw-------. 1 boinc boinc 192869464 Jun  5 20:38 shared/HITS.pool.root.1
[2025-06-05 20:49:37]  *** Contents of shared directory: ***
[2025-06-05 20:49:37] total 412164
[2025-06-05 20:49:37] -rw-r--r--. 2 boinc boinc 226706974 Jun  5 15:44 ATLAS.root_0
[2025-06-05 20:49:37] -rw-r--r--. 2 boinc boinc     15093 Jun  5 15:44 start_atlas.sh
[2025-06-05 20:49:37] -rw-r--r--. 2 boinc boinc    508877 Jun  5 15:44 input.tar.gz
[2025-06-05 20:49:37] -rw-------. 1 boinc boinc 192869464 Jun  5 20:38 HITS.pool.root.1
[2025-06-05 20:49:37] -rw-------. 1 boinc boinc   1945600 Jun  5 20:41 result.tar.gz
20:49:39 (26055): run_atlas exited; CPU time 68509.643953
20:49:39 (26055): called boinc_finish(0)

</stderr_txt>
]]>

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