Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:41:44 (988341): wrapper (7.7.26015): starting
09:41:44 (988341): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 09:41:44] Arguments: --nthreads 8
[2025-06-05 09:41:44] Threads: 8
[2025-06-05 09:41:44] Checking for CVMFS
[2025-06-05 09:41:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 09:41:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 09:41:45] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 09:41:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 09:41:45] 2.12.6.0 383503 25022 643740 146820 1 707 27563772 32935936 20524 16776704 0 236016129 99.691 186800995 22479 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-05 09:41:45] CVMFS is ok
[2025-06-05 09:41:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 09:41:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 09:41:45] Further information can be found at the LHC@home message board.
[2025-06-05 09:41:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 09:41:45] Checking for apptainer binary...
[2025-06-05 09:41:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 09:41:45] Running /usr/bin/apptainer --version
[2025-06-05 09:41:45] apptainer version 1.4.1-1.el9
[2025-06-05 09:41:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 09:41:45] c7-2-14.aglt2.org
[2025-06-05 09:41:45] apptainer works
[2025-06-05 09:41:45] Set ATHENA_PROC_NUMBER=8
[2025-06-05 09:41:45] Set ATHENA_CORE_NUMBER=8
[2025-06-05 09:41:45] Starting ATLAS job with PandaID=6668992941
[2025-06-05 09:41:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 11:13:27]  *** The last 200 lines of the pilot log: ***
[2025-06-05 11:13:27]  filetype=log
[2025-06-05 11:13:27]  guid=14d2957b-b5d6-4cb1-a583-da877548c735
[2025-06-05 11:13:27]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-05 11:13:27]  is_altstaged=None
[2025-06-05 11:13:27]  is_tar=False
[2025-06-05 11:13:27]  lfn=log.44871837._092468.job.log.tgz.1
[2025-06-05 11:13:27]  mtime=0
[2025-06-05 11:13:27]  protocol_id=None
[2025-06-05 11:13:27]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-05 11:13:27]  replicas=None
[2025-06-05 11:13:27]  scope=mc23_13p6TeV
[2025-06-05 11:13:27]  status=None
[2025-06-05 11:13:27]  status_code=0
[2025-06-05 11:13:27]  storage_token=
[2025-06-05 11:13:27]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6668992941/log.44871837._092468.job.log.tgz.1
[2025-06-05 11:13:27]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b9/9a/log.44871837._092468.job.log.tgz.1
[2025-06-05 11:13:27]  workdir=None
[2025-06-05 11:13:27] ]
[2025-06-05 11:13:27] 2025-06-05 15:13:07,888 | INFO     | transferring file log.44871837._092468.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6668992941/log.44871837._092468.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-05 11:13:27] 2025-06-05 15:13:07,888 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6668992941/log.44871837._092468.job.log.tgz.1 /tmp/boinchome/slots/1/log.44871837._092468.job
[2025-06-05 11:13:27] 2025-06-05 15:13:07,903 | INFO     | adding to output.list: log.44871837._092468.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b9/9a/log.44871837._092468.job.log.tg
[2025-06-05 11:13:27] 2025-06-05 15:13:07,903 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-05 11:13:27] 2025-06-05 15:13:07,903 | INFO     | summary of transferred files:
[2025-06-05 11:13:27] 2025-06-05 15:13:07,903 | INFO     |  -- lfn=log.44871837._092468.job.log.tgz.1, status_code=0, status=transferred
[2025-06-05 11:13:27] 2025-06-05 15:13:07,903 | INFO     | stage-out finished correctly
[2025-06-05 11:13:27] 2025-06-05 15:13:10,187 | INFO     | monitor loop #396: job 0:6668992941 is in state 'finished'
[2025-06-05 11:13:27] 2025-06-05 15:13:10,187 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 11:13:27] 2025-06-05 15:13:11,002 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-05 11:13:27] 2025-06-05 15:13:11,050 | INFO     | job 6668992941 has state=finished
[2025-06-05 11:13:27] 2025-06-05 15:13:11,050 | INFO     | preparing for final server update for job 6668992941 in state='finished'
[2025-06-05 11:13:27] 2025-06-05 15:13:11,050 | INFO     | this job has now completed (state=finished)
[2025-06-05 11:13:27] 2025-06-05 15:13:11,050 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-05 11:13:27] 2025-06-05 15:13:11,050 | INFO     | log transfer has been attempted: DONE
[2025-06-05 11:13:27] 2025-06-05 15:13:11,050 | INFO     | job 6668992941 has finished - writing final server update
[2025-06-05 11:13:27] 2025-06-05 15:13:11,050 | INFO     | total number of processed events: 400 (read)
[2025-06-05 11:13:27] 2025-06-05 15:13:11,066 | INFO     | executing command: lscpu
[2025-06-05 11:13:27] 2025-06-05 15:13:11,155 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 11:13:27] 2025-06-05 15:13:12,690 | INFO     | monitor loop #397: job 0:6668992941 is in state 'finished'
[2025-06-05 11:13:27] 2025-06-05 15:13:12,690 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 11:13:27] 2025-06-05 15:13:15,069 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 11:13:27] 2025-06-05 15:13:15,071 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6668992941/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 11:13:27] 2025-06-05 15:13:15,071 | INFO     | extracted standard info from prmon json
[2025-06-05 11:13:27] 2025-06-05 15:13:15,071 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 11:13:27] 2025-06-05 15:13:15,071 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 11:13:27] 2025-06-05 15:13:15,072 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 11:13:27] 2025-06-05 15:13:15,072 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 11:13:27] 2025-06-05 15:13:15,073 | INFO     | fitting pss+swap vs Time
[2025-06-05 11:13:27] 2025-06-05 15:13:15,073 | INFO     | sum of square deviations: 177275882.0
[2025-06-05 11:13:27] 2025-06-05 15:13:15,074 | INFO     | sum of deviations: -5287919932.0
[2025-06-05 11:13:27] 2025-06-05 15:13:15,074 | INFO     | mean x: 1749133750.0
[2025-06-05 11:13:27] 2025-06-05 15:13:15,074 | INFO     | mean y: 2235022.674698795
[2025-06-05 11:13:27] 2025-06-05 15:13:15,074 | INFO     | -- intersect: 52176727773.80316
[2025-06-05 11:13:27] 2025-06-05 15:13:15,074 | INFO     | intersect: 52176727773.80316
[2025-06-05 11:13:27] 2025-06-05 15:13:15,074 | INFO     | chi2: 0.04979291369335509
[2025-06-05 11:13:27] 2025-06-05 15:13:15,074 | INFO     | -- intersect: 52176727773.80316
[2025-06-05 11:13:27] 2025-06-05 15:13:15,074 | INFO     | current memory leak: -29.83 B/s (using 83 data points, chi2=0.05)
[2025-06-05 11:13:27] 2025-06-05 15:13:15,075 | INFO     | ..............................
[2025-06-05 11:13:27] 2025-06-05 15:13:15,075 | INFO     | . Timing measurements:
[2025-06-05 11:13:27] 2025-06-05 15:13:15,075 | INFO     | . get job = 0 s
[2025-06-05 11:13:27] 2025-06-05 15:13:15,075 | INFO     | . initial setup = 2 s
[2025-06-05 11:13:27] 2025-06-05 15:13:15,075 | INFO     | . payload setup = 6 s
[2025-06-05 11:13:27] 2025-06-05 15:13:15,075 | INFO     | . stage-in = 0 s
[2025-06-05 11:13:27] 2025-06-05 15:13:15,075 | INFO     | . payload execution = 5445 s
[2025-06-05 11:13:27] 2025-06-05 15:13:15,075 | INFO     | . stage-out = 0 s
[2025-06-05 11:13:27] 2025-06-05 15:13:15,075 | INFO     | . log creation = 0 s
[2025-06-05 11:13:27] 2025-06-05 15:13:15,075 | INFO     | ..............................
[2025-06-05 11:13:27] 2025-06-05 15:13:15,145 | INFO     | 
[2025-06-05 11:13:27] 2025-06-05 15:13:15,145 | INFO     | job summary report
[2025-06-05 11:13:27] 2025-06-05 15:13:15,145 | INFO     | --------------------------------------------------
[2025-06-05 11:13:27] 2025-06-05 15:13:15,145 | INFO     | PanDA job id: 6668992941
[2025-06-05 11:13:27] 2025-06-05 15:13:15,145 | INFO     | task id: 44871837
[2025-06-05 11:13:27] 2025-06-05 15:13:15,145 | INFO     | errors: (none)
[2025-06-05 11:13:27] 2025-06-05 15:13:15,145 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 11:13:27] 2025-06-05 15:13:15,145 | INFO     | pilot state: finished 
[2025-06-05 11:13:27] 2025-06-05 15:13:15,145 | INFO     | transexitcode: 0
[2025-06-05 11:13:27] 2025-06-05 15:13:15,145 | INFO     | exeerrorcode: 0
[2025-06-05 11:13:27] 2025-06-05 15:13:15,146 | INFO     | exeerrordiag: 
[2025-06-05 11:13:27] 2025-06-05 15:13:15,146 | INFO     | exitcode: 0
[2025-06-05 11:13:27] 2025-06-05 15:13:15,146 | INFO     | exitmsg: OK
[2025-06-05 11:13:27] 2025-06-05 15:13:15,146 | INFO     | cpuconsumptiontime: 38368 s
[2025-06-05 11:13:27] 2025-06-05 15:13:15,146 | INFO     | nevents: 400
[2025-06-05 11:13:27] 2025-06-05 15:13:15,146 | INFO     | neventsw: 0
[2025-06-05 11:13:27] 2025-06-05 15:13:15,146 | INFO     | pid: 1012499
[2025-06-05 11:13:27] 2025-06-05 15:13:15,146 | INFO     | pgrp: 1012499
[2025-06-05 11:13:27] 2025-06-05 15:13:15,146 | INFO     | corecount: 8
[2025-06-05 11:13:27] 2025-06-05 15:13:15,146 | INFO     | event service: False
[2025-06-05 11:13:27] 2025-06-05 15:13:15,146 | INFO     | sizes: {0: 2397390, 5: 2397596, 11: 2397652, 5455: 2424129, 5456: 2433070, 5459: 2433126, 5463: 2433424}
[2025-06-05 11:13:27] 2025-06-05 15:13:15,146 | INFO     | --------------------------------------------------
[2025-06-05 11:13:27] 2025-06-05 15:13:15,146 | INFO     | 
[2025-06-05 11:13:27] 2025-06-05 15:13:15,146 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-05 11:13:27] 2025-06-05 15:13:15,165 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 11:13:27] 2025-06-05 15:13:15,166 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 11:13:27] 2025-06-05 15:13:15,166 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 11:13:27] 2025-06-05 15:13:15,166 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 11:13:27] 2025-06-05 15:13:15,166 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 11:13:27] 2025-06-05 15:13:15,166 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 11:13:27] 2025-06-05 15:13:15,166 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 11:13:27] 2025-06-05 15:13:15,166 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 11:13:27] 2025-06-05 15:13:15,166 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 11:13:27] 2025-06-05 15:13:15,166 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 11:13:27] 2025-06-05 15:13:15,166 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 11:13:27] 2025-06-05 15:13:15,166 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 11:13:27] 2025-06-05 15:13:15,166 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 11:13:27] 2025-06-05 15:13:15,167 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 11:13:27] 2025-06-05 15:13:15,167 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 11:13:27] 2025-06-05 15:13:15,167 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 11:13:27] 2025-06-05 15:13:15,167 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 11:13:27] 2025-06-05 15:13:15,167 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 11:13:27] 2025-06-05 15:13:15,167 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 11:13:27] 2025-06-05 15:13:15,167 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 11:13:27] 2025-06-05 15:13:15,167 | INFO     | job 6668992941 has completed (purged errors)
[2025-06-05 11:13:27] 2025-06-05 15:13:15,167 | INFO     | overall cleanup function is called
[2025-06-05 11:13:27] 2025-06-05 15:13:16,175 | INFO     | --- collectZombieJob: --- 10, [1012499]
[2025-06-05 11:13:27] 2025-06-05 15:13:16,175 | INFO     | zombie collector waiting for pid 1012499
[2025-06-05 11:13:27] 2025-06-05 15:13:16,175 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 11:13:27] 2025-06-05 15:13:16,175 | INFO     | collected zombie processes
[2025-06-05 11:13:27] 2025-06-05 15:13:16,175 | INFO     | will attempt to kill all subprocesses of pid=1012499
[2025-06-05 11:13:27] 2025-06-05 15:13:16,538 | INFO     | process IDs to be killed: [1012499] (in reverse order)
[2025-06-05 11:13:27] 2025-06-05 15:13:16,638 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 11:13:27] 2025-06-05 15:13:16,639 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 11:13:27] 2025-06-05 15:13:16,656 | INFO     | did not find any defunct processes belonging to 1012499
[2025-06-05 11:13:27] 2025-06-05 15:13:16,673 | INFO     | did not find any defunct processes belonging to 1012499
[2025-06-05 11:13:27] 2025-06-05 15:13:16,674 | INFO     | ready for new job
[2025-06-05 11:13:27] 2025-06-05 15:13:16,674 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 11:13:27] 2025-06-05 15:13:16,676 | INFO     | **************************************
[2025-06-05 11:13:27] 2025-06-05 15:13:16,676 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 11:13:27] 2025-06-05 15:13:16,676 | INFO     | **************************************
[2025-06-05 11:13:27] 2025-06-05 15:13:16,676 | INFO     | 
[2025-06-05 11:13:27] 2025-06-05 15:13:16,694 | INFO     | architecture information:
[2025-06-05 11:13:27] 2025-06-05 15:13:16,694 | INFO     | executing command: cat /etc/os-release
[2025-06-05 11:13:27] 2025-06-05 15:13:16,711 | INFO     | cat /etc/os-release:
[2025-06-05 11:13:27] NAME="CentOS Linux"
[2025-06-05 11:13:27] VERSION="7 (Core)"
[2025-06-05 11:13:27] ID="centos"
[2025-06-05 11:13:27] ID_LIKE="rhel fedora"
[2025-06-05 11:13:27] VERSION_ID="7"
[2025-06-05 11:13:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 11:13:27] ANSI_COLOR="0;31"
[2025-06-05 11:13:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 11:13:27] HOME_URL="https://www.centos.org/"
[2025-06-05 11:13:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 11:13:27] 
[2025-06-05 11:13:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 11:13:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 11:13:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 11:13:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 11:13:27] 
[2025-06-05 11:13:27] 2025-06-05 15:13:16,711 | INFO     | **************************************
[2025-06-05 11:13:27] 2025-06-05 15:13:17,215 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-05 11:13:27] 2025-06-05 15:13:17,232 | INFO     | sufficient remaining disk space (76206309376 B)
[2025-06-05 11:13:27] 2025-06-05 15:13:17,232 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 11:13:27] 2025-06-05 15:13:17,232 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 11:13:27] 2025-06-05 15:13:17,232 | INFO     | update_server=False
[2025-06-05 11:13:27] 2025-06-05 15:13:17,232 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 11:13:27] 2025-06-05 15:13:17,232 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 11:13:27] 2025-06-05 15:13:17,333 | INFO     | all job control threads have been joined
[2025-06-05 11:13:27] 2025-06-05 15:13:17,427 | INFO     | all data control threads have been joined
[2025-06-05 11:13:27] 2025-06-05 15:13:17,436 | INFO     | all payload control threads have been joined
[2025-06-05 11:13:27] 2025-06-05 15:13:17,701 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-05 11:13:27] 2025-06-05 15:13:17,701 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-05 11:13:27] 2025-06-05 15:13:17,701 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 11:13:27] 2025-06-05 15:13:17,701 | INFO     | will abort loop
[2025-06-05 11:13:27] 2025-06-05 15:13:18,177 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 11:13:27] 2025-06-05 15:13:18,178 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 11:13:27] 2025-06-05 15:13:18,178 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 11:13:27] 2025-06-05 15:13:18,237 | INFO     | [job] retrieve thread has finished
[2025-06-05 11:13:27] 2025-06-05 15:13:18,338 | INFO     | [job] control thread has finished
[2025-06-05 11:13:27] 2025-06-05 15:13:18,433 | INFO     | [data] control thread has finished
[2025-06-05 11:13:27] 2025-06-05 15:13:18,437 | INFO     | [payload] control thread has finished
[2025-06-05 11:13:27] 2025-06-05 15:13:18,457 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 11:13:27] 2025-06-05 15:13:18,686 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 11:13:27] 2025-06-05 15:13:18,706 | INFO     | [job] job monitor thread has finished
[2025-06-05 11:13:27] 2025-06-05 15:13:18,817 | INFO     | [payload] failed_post thread has finished
[2025-06-05 11:13:27] 2025-06-05 15:13:18,922 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 11:13:27] 2025-06-05 15:13:19,071 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 11:13:27] 2025-06-05 15:13:19,274 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 11:13:27] 2025-06-05 15:13:19,471 | INFO     | [data] copytool_in thread has finished
[2025-06-05 11:13:27] 2025-06-05 15:13:19,554 | INFO     | [job] validate thread has finished
[2025-06-05 11:13:27] 2025-06-05 15:13:19,685 | INFO     | [payload] validate_post thread has finished
[2025-06-05 11:13:27] 2025-06-05 15:13:20,156 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 11:13:27] 2025-06-05 15:13:20,463 | INFO     | [data] copytool_out thread has finished
[2025-06-05 11:13:27] 2025-06-05 15:13:21,161 | INFO     | [job] queue monitor thread has finished
[2025-06-05 11:13:27] 2025-06-05 15:13:21,238 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 11:13:27] 2025-06-05 15:13:21,759 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139631486588736)>', '<ExcThread(monitor, started 139630854792960)>']
[2025-06-05 11:13:27] 2025-06-05 15:13:22,195 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 11:13:27] 2025-06-05 15:13:22,195 | INFO     | [monitor] control thread has ended
[2025-06-05 11:13:27] 2025-06-05 15:13:26,785 | INFO     | all workflow threads have been joined
[2025-06-05 11:13:27] 2025-06-05 15:13:26,785 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 11:13:27] 2025-06-05 15:13:26,785 | INFO     | traces error code: 0
[2025-06-05 11:13:27] 2025-06-05 15:13:26,786 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 11:13:27] 2025-06-05 15:13:26,914 [wrapper] ==== pilot stdout END ====
[2025-06-05 11:13:27] 2025-06-05 15:13:26,917 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 11:13:27] 2025-06-05 15:13:26,920 [wrapper] pilotpid: 993848
[2025-06-05 11:13:27] 2025-06-05 15:13:26,923 [wrapper] Pilot exit status: 0
[2025-06-05 11:13:27] 2025-06-05 15:13:26,935 [wrapper] pandaids: 6668992941
[2025-06-05 11:13:27] 2025-06-05 15:13:27,023 [wrapper] cleanup supervisor_pilot 1289484 993849
[2025-06-05 11:13:27] 2025-06-05 15:13:27,025 [wrapper] Test setup, not cleaning
[2025-06-05 11:13:27] 2025-06-05 15:13:27,028 [wrapper] apfmon messages muted
[2025-06-05 11:13:27] 2025-06-05 15:13:27,031 [wrapper] ==== wrapper stdout END ====
[2025-06-05 11:13:27] 2025-06-05 15:13:27,035 [wrapper] ==== wrapper stderr END ====
[2025-06-05 11:13:27]  *** Error codes and diagnostics ***
[2025-06-05 11:13:27]     "exeErrorCode": 0,
[2025-06-05 11:13:27]     "exeErrorDiag": "",
[2025-06-05 11:13:27]     "pilotErrorCode": 0,
[2025-06-05 11:13:27]     "pilotErrorDiag": "",
[2025-06-05 11:13:27]  *** Listing of results directory ***
[2025-06-05 11:13:27] total 413996
[2025-06-05 11:13:27] -rw-r--r--. 1 boincer umatlas    495897 May 28 20:19 pilot3.tar.gz
[2025-06-05 11:13:27] -rwx------. 1 boincer umatlas     37140 May 28 20:22 runpilot2-wrapper.sh
[2025-06-05 11:13:27] -rw-r--r--. 1 boincer umatlas      5111 May 28 20:22 queuedata.json
[2025-06-05 11:13:27] -rw-r--r--. 1 boincer umatlas       100 Jun  5 09:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 11:13:27] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  5 09:41 run_atlas
[2025-06-05 11:13:27] -rw-r--r--. 1 boincer umatlas       105 Jun  5 09:41 job.xml
[2025-06-05 11:13:27] -rw-r--r--. 2 boincer umatlas 223752332 Jun  5 09:41 EVNT.44871834._003597.pool.root.1
[2025-06-05 11:13:27] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 09:41 start_atlas.sh
[2025-06-05 11:13:27] drwxrwx--x. 2 boincer umatlas      4096 Jun  5 09:41 shared
[2025-06-05 11:13:27] -rw-r--r--. 2 boincer umatlas    508875 Jun  5 09:41 input.tar.gz
[2025-06-05 11:13:27] -rw-r--r--. 1 boincer umatlas         0 Jun  5 09:41 boinc_lockfile
[2025-06-05 11:13:27] -rw-r--r--. 1 boincer umatlas      2558 Jun  5 09:41 pandaJob.out
[2025-06-05 11:13:27] -rw-------. 1 boincer umatlas    983210 Jun  5 09:41 agis_schedconf.cvmfs.json
[2025-06-05 11:13:27] -rw-------. 1 boincer umatlas   1598969 Jun  5 09:41 agis_ddmendpoints.agis.ALL.json
[2025-06-05 11:13:27] drwx------. 4 boincer umatlas      4096 Jun  5 09:41 pilot3
[2025-06-05 11:13:27] -rw-r--r--. 1 boincer umatlas      6934 Jun  5 11:12 init_data.xml
[2025-06-05 11:13:27] -rw-------. 1 boincer umatlas 194686506 Jun  5 11:12 HITS.44871837._092468.pool.root.1
[2025-06-05 11:13:27] -rw-------. 1 boincer umatlas        95 Jun  5 11:12 pilot_heartbeat.json
[2025-06-05 11:13:27] -rw-r--r--. 1 boincer umatlas       529 Jun  5 11:12 boinc_task_state.xml
[2025-06-05 11:13:27] -rw-------. 1 boincer umatlas      1033 Jun  5 11:13 memory_monitor_summary.json
[2025-06-05 11:13:27] -rw-------. 1 boincer umatlas    303341 Jun  5 11:13 log.44871837._092468.job.log.tgz.1
[2025-06-05 11:13:27] -rw-------. 1 boincer umatlas      7688 Jun  5 11:13 heartbeat.json
[2025-06-05 11:13:27] -rw-r--r--. 1 boincer umatlas      8192 Jun  5 11:13 boinc_mmap_file
[2025-06-05 11:13:27] -rw-r--r--. 1 boincer umatlas        27 Jun  5 11:13 wrapper_checkpoint.txt
[2025-06-05 11:13:27] -rw-------. 1 boincer umatlas      4539 Jun  5 11:13 pilotlog.txt
[2025-06-05 11:13:27] -rw-------. 1 boincer umatlas    527581 Jun  5 11:13 log.44871837._092468.job.log.1
[2025-06-05 11:13:27] -rw-------. 1 boincer umatlas       357 Jun  5 11:13 output.list
[2025-06-05 11:13:27] -rw-r--r--. 1 boincer umatlas       620 Jun  5 11:13 runtime_log
[2025-06-05 11:13:27] -rw-------. 1 boincer umatlas    849920 Jun  5 11:13 result.tar.gz
[2025-06-05 11:13:27] -rw-r--r--. 1 boincer umatlas      8654 Jun  5 11:13 runtime_log.err
[2025-06-05 11:13:27] -rw-------. 1 boincer umatlas       651 Jun  5 11:13 JshMDm6Dge7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmEPdKDmSJdKyn.diag
[2025-06-05 11:13:27] -rw-r--r--. 1 boincer umatlas     21191 Jun  5 11:13 stderr.txt
[2025-06-05 11:13:27] HITS file was successfully produced:
[2025-06-05 11:13:27] -rw-------. 1 boincer umatlas 194686506 Jun  5 11:12 shared/HITS.pool.root.1
[2025-06-05 11:13:27]  *** Contents of shared directory: ***
[2025-06-05 11:13:27] total 409988
[2025-06-05 11:13:27] -rw-r--r--. 2 boincer umatlas 223752332 Jun  5 09:41 ATLAS.root_0
[2025-06-05 11:13:27] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 09:41 start_atlas.sh
[2025-06-05 11:13:27] -rw-r--r--. 2 boincer umatlas    508875 Jun  5 09:41 input.tar.gz
[2025-06-05 11:13:27] -rw-------. 1 boincer umatlas 194686506 Jun  5 11:12 HITS.pool.root.1
[2025-06-05 11:13:27] -rw-------. 1 boincer umatlas    849920 Jun  5 11:13 result.tar.gz
11:13:48 (988341): run_atlas exited; CPU time 38488.059155
11:13:48 (988341): called boinc_finish(0)

</stderr_txt>
]]>

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