Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:22:34 (1122764): wrapper (7.7.26015): starting
09:22:34 (1122764): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 09:22:34] Arguments: --nthreads 8
[2025-06-05 09:22:34] Threads: 8
[2025-06-05 09:22:34] Checking for CVMFS
[2025-06-05 09:22:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 09:22:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 09:22:34] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 09:22:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 09:22:35] 2.12.6.0 6401 2836 251348 146820 3 279 19819437 32935937 17902 16776704 0 22885114 99.856 10127778 41056 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-05 09:22:35] CVMFS is ok
[2025-06-05 09:22:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 09:22:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 09:22:35] Further information can be found at the LHC@home message board.
[2025-06-05 09:22:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 09:22:35] Checking for apptainer binary...
[2025-06-05 09:22:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 09:22:35] Running /usr/bin/apptainer --version
[2025-06-05 09:22:35] apptainer version 1.4.1-1.el9
[2025-06-05 09:22:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 09:22:35] c6-8-25-1.aglt2.org
[2025-06-05 09:22:35] apptainer works
[2025-06-05 09:22:35] Set ATHENA_PROC_NUMBER=8
[2025-06-05 09:22:35] Set ATHENA_CORE_NUMBER=8
[2025-06-05 09:22:35] Starting ATLAS job with PandaID=6668946942
[2025-06-05 09:22:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 11:30:20]  *** The last 200 lines of the pilot log: ***
[2025-06-05 11:30:20] 2025-06-05 15:29:57,136 | INFO     | total number of processed events: 400 (read)
[2025-06-05 11:30:20] 2025-06-05 15:29:57,154 | INFO     | executing command: lscpu
[2025-06-05 11:30:20] 2025-06-05 15:29:57,222 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 11:30:20] 2025-06-05 15:29:59,554 | INFO     | monitor loop #536: job 0:6668946942 is in state 'finished'
[2025-06-05 11:30:20] 2025-06-05 15:29:59,561 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 11:30:20] 2025-06-05 15:29:59,941 | INFO     | PID=1126337 has CPU usage=15.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-05 11:30:20] 2025-06-05 15:29:59,941 | INFO     | .. there are 12 such processes running
[2025-06-05 11:30:20] 2025-06-05 15:30:01,448 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-05 11:30:20] 2025-06-05 15:30:01,449 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6668946942/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 11:30:20] 2025-06-05 15:30:01,450 | INFO     | extracted standard info from prmon json
[2025-06-05 11:30:20] 2025-06-05 15:30:01,450 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 11:30:20] 2025-06-05 15:30:01,450 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 11:30:20] 2025-06-05 15:30:01,450 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 11:30:20] 2025-06-05 15:30:01,450 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 11:30:20] 2025-06-05 15:30:01,453 | INFO     | fitting pss+swap vs Time
[2025-06-05 11:30:20] 2025-06-05 15:30:01,454 | INFO     | sum of square deviations: 605592750.0
[2025-06-05 11:30:20] 2025-06-05 15:30:01,454 | INFO     | sum of deviations: -13035382006.999998
[2025-06-05 11:30:20] 2025-06-05 15:30:01,454 | INFO     | mean x: 1749133575.0
[2025-06-05 11:30:20] 2025-06-05 15:30:01,454 | INFO     | mean y: 2273954.856
[2025-06-05 11:30:20] 2025-06-05 15:30:01,454 | INFO     | -- intersect: 37652368562.81586
[2025-06-05 11:30:20] 2025-06-05 15:30:01,455 | INFO     | intersect: 37652368562.81586
[2025-06-05 11:30:20] 2025-06-05 15:30:01,455 | INFO     | chi2: 1.9218011460494961
[2025-06-05 11:30:20] 2025-06-05 15:30:01,455 | INFO     | sum of square deviations: 535786790.0
[2025-06-05 11:30:20] 2025-06-05 15:30:01,456 | INFO     | sum of deviations: -11753926153.999998
[2025-06-05 11:30:20] 2025-06-05 15:30:01,456 | INFO     | mean x: 1749133422.5
[2025-06-05 11:30:20] 2025-06-05 15:30:01,456 | INFO     | mean y: 2276776.283333333
[2025-06-05 11:30:20] 2025-06-05 15:30:01,456 | INFO     | -- intersect: 38374228950.688896
[2025-06-05 11:30:20] 2025-06-05 15:30:01,456 | INFO     | intersect: 38374228950.688896
[2025-06-05 11:30:20] 2025-06-05 15:30:01,456 | INFO     | chi2: 1.919099122182055
[2025-06-05 11:30:20] 2025-06-05 15:30:01,456 | INFO     | current chi2=1.919099122182055 (change=0.14059851473163426 %)
[2025-06-05 11:30:20] 2025-06-05 15:30:01,456 | INFO     | right removable region: 119
[2025-06-05 11:30:20] 2025-06-05 15:30:01,457 | INFO     | sum of square deviations: 535786790.0
[2025-06-05 11:30:20] 2025-06-05 15:30:01,457 | INFO     | sum of deviations: -30232557059.499996
[2025-06-05 11:30:20] 2025-06-05 15:30:01,457 | INFO     | mean x: 1749133727.5
[2025-06-05 11:30:20] 2025-06-05 15:30:01,457 | INFO     | mean y: 2310909.841666667
[2025-06-05 11:30:20] 2025-06-05 15:30:01,457 | INFO     | -- intersect: 98699752146.38217
[2025-06-05 11:30:20] 2025-06-05 15:30:01,458 | INFO     | intersect: 98699752146.38217
[2025-06-05 11:30:20] 2025-06-05 15:30:01,458 | INFO     | chi2: 0.40200274624309273
[2025-06-05 11:30:20] 2025-06-05 15:30:01,458 | INFO     | current chi2=0.40200274624309273 (change=79.08198009614782 %)
[2025-06-05 11:30:20] 2025-06-05 15:30:01,458 | INFO     | sum of square deviations: 471562330.0
[2025-06-05 11:30:20] 2025-06-05 15:30:01,459 | INFO     | sum of deviations: -30687561946.0
[2025-06-05 11:30:20] 2025-06-05 15:30:01,459 | INFO     | mean x: 1749133880.0
[2025-06-05 11:30:20] 2025-06-05 15:30:01,459 | INFO     | mean y: 2311872.052173913
[2025-06-05 11:30:20] 2025-06-05 15:30:01,459 | INFO     | -- intersect: 113829585340.54007
[2025-06-05 11:30:20] 2025-06-05 15:30:01,459 | INFO     | intersect: 113829585340.54007
[2025-06-05 11:30:20] 2025-06-05 15:30:01,459 | INFO     | chi2: 0.331817467936242
[2025-06-05 11:30:20] 2025-06-05 15:30:01,459 | INFO     | current chi2=0.331817467936242 (change=17.458905184794286 %)
[2025-06-05 11:30:20] 2025-06-05 15:30:01,459 | INFO     | left removable region: 20
[2025-06-05 11:30:20] 2025-06-05 15:30:01,459 | INFO     | sum of square deviations: 300842850.0
[2025-06-05 11:30:20] 2025-06-05 15:30:01,460 | INFO     | sum of deviations: -20296212678.0
[2025-06-05 11:30:20] 2025-06-05 15:30:01,460 | INFO     | mean x: 1749134002.0
[2025-06-05 11:30:20] 2025-06-05 15:30:01,460 | INFO     | mean y: 2293446.797979798
[2025-06-05 11:30:20] 2025-06-05 15:30:01,460 | INFO     | -- intersect: 118006745628.10551
[2025-06-05 11:30:20] 2025-06-05 15:30:01,460 | INFO     | intersect: 118006745628.10551
[2025-06-05 11:30:20] 2025-06-05 15:30:01,460 | INFO     | chi2: 0.3105388424004513
[2025-06-05 11:30:20] 2025-06-05 15:30:01,461 | INFO     | -- intersect: 118006745628.10551
[2025-06-05 11:30:20] 2025-06-05 15:30:01,461 | INFO     | current memory leak: -67.46 B/s (using 99 data points, chi2=0.31)
[2025-06-05 11:30:20] 2025-06-05 15:30:01,461 | INFO     | ..............................
[2025-06-05 11:30:20] 2025-06-05 15:30:01,461 | INFO     | . Timing measurements:
[2025-06-05 11:30:20] 2025-06-05 15:30:01,461 | INFO     | . get job = 0 s
[2025-06-05 11:30:20] 2025-06-05 15:30:01,461 | INFO     | . initial setup = 2 s
[2025-06-05 11:30:20] 2025-06-05 15:30:01,462 | INFO     | . payload setup = 6 s
[2025-06-05 11:30:20] 2025-06-05 15:30:01,462 | INFO     | . stage-in = 0 s
[2025-06-05 11:30:20] 2025-06-05 15:30:01,462 | INFO     | . payload execution = 7601 s
[2025-06-05 11:30:20] 2025-06-05 15:30:01,462 | INFO     | . stage-out = 1 s
[2025-06-05 11:30:20] 2025-06-05 15:30:01,462 | INFO     | . log creation = 0 s
[2025-06-05 11:30:20] 2025-06-05 15:30:01,462 | INFO     | ..............................
[2025-06-05 11:30:20] 2025-06-05 15:30:01,580 | INFO     | 
[2025-06-05 11:30:20] 2025-06-05 15:30:01,581 | INFO     | job summary report
[2025-06-05 11:30:20] 2025-06-05 15:30:01,581 | INFO     | --------------------------------------------------
[2025-06-05 11:30:20] 2025-06-05 15:30:01,581 | INFO     | PanDA job id: 6668946942
[2025-06-05 11:30:20] 2025-06-05 15:30:01,581 | INFO     | task id: 44871837
[2025-06-05 11:30:20] 2025-06-05 15:30:01,581 | INFO     | errors: (none)
[2025-06-05 11:30:20] 2025-06-05 15:30:01,581 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 11:30:20] 2025-06-05 15:30:01,581 | INFO     | pilot state: finished 
[2025-06-05 11:30:20] 2025-06-05 15:30:01,582 | INFO     | transexitcode: 0
[2025-06-05 11:30:20] 2025-06-05 15:30:01,582 | INFO     | exeerrorcode: 0
[2025-06-05 11:30:20] 2025-06-05 15:30:01,582 | INFO     | exeerrordiag: 
[2025-06-05 11:30:20] 2025-06-05 15:30:01,582 | INFO     | exitcode: 0
[2025-06-05 11:30:20] 2025-06-05 15:30:01,582 | INFO     | exitmsg: OK
[2025-06-05 11:30:20] 2025-06-05 15:30:01,582 | INFO     | cpuconsumptiontime: 53193 s
[2025-06-05 11:30:20] 2025-06-05 15:30:01,582 | INFO     | nevents: 400
[2025-06-05 11:30:20] 2025-06-05 15:30:01,582 | INFO     | neventsw: 0
[2025-06-05 11:30:20] 2025-06-05 15:30:01,582 | INFO     | pid: 1132799
[2025-06-05 11:30:20] 2025-06-05 15:30:01,582 | INFO     | pgrp: 1132799
[2025-06-05 11:30:20] 2025-06-05 15:30:01,582 | INFO     | corecount: 8
[2025-06-05 11:30:20] 2025-06-05 15:30:01,582 | INFO     | event service: False
[2025-06-05 11:30:20] 2025-06-05 15:30:01,582 | INFO     | sizes: {0: 2397221, 1: 2397420, 5: 2397626, 11: 2397682, 7611: 2425130, 7612: 2434071, 7615: 2434255, 7620: 2434425}
[2025-06-05 11:30:20] 2025-06-05 15:30:01,582 | INFO     | --------------------------------------------------
[2025-06-05 11:30:20] 2025-06-05 15:30:01,582 | INFO     | 
[2025-06-05 11:30:20] 2025-06-05 15:30:01,583 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 11:30:20] 2025-06-05 15:30:01,611 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 11:30:20] 2025-06-05 15:30:01,611 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 11:30:20] 2025-06-05 15:30:01,611 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 11:30:20] 2025-06-05 15:30:01,611 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 11:30:20] 2025-06-05 15:30:01,611 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 11:30:20] 2025-06-05 15:30:01,611 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 11:30:20] 2025-06-05 15:30:01,611 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 11:30:20] 2025-06-05 15:30:01,612 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 11:30:20] 2025-06-05 15:30:01,612 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 11:30:20] 2025-06-05 15:30:01,612 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 11:30:20] 2025-06-05 15:30:01,612 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 11:30:20] 2025-06-05 15:30:01,612 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 11:30:20] 2025-06-05 15:30:01,612 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 11:30:20] 2025-06-05 15:30:01,612 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 11:30:20] 2025-06-05 15:30:01,612 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 11:30:20] 2025-06-05 15:30:01,612 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 11:30:20] 2025-06-05 15:30:01,612 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 11:30:20] 2025-06-05 15:30:01,612 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 11:30:20] 2025-06-05 15:30:01,612 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 11:30:20] 2025-06-05 15:30:01,612 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 11:30:20] 2025-06-05 15:30:01,613 | INFO     | job 6668946942 has completed (purged errors)
[2025-06-05 11:30:20] 2025-06-05 15:30:01,613 | INFO     | overall cleanup function is called
[2025-06-05 11:30:20] 2025-06-05 15:30:02,620 | INFO     | --- collectZombieJob: --- 10, [1132799]
[2025-06-05 11:30:20] 2025-06-05 15:30:02,620 | INFO     | zombie collector waiting for pid 1132799
[2025-06-05 11:30:20] 2025-06-05 15:30:02,621 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 11:30:20] 2025-06-05 15:30:02,621 | INFO     | collected zombie processes
[2025-06-05 11:30:20] 2025-06-05 15:30:02,621 | INFO     | will attempt to kill all subprocesses of pid=1132799
[2025-06-05 11:30:20] 2025-06-05 15:30:02,956 | INFO     | process IDs to be killed: [1132799] (in reverse order)
[2025-06-05 11:30:20] 2025-06-05 15:30:03,063 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 11:30:20] 2025-06-05 15:30:03,064 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 11:30:20] 2025-06-05 15:30:03,078 | INFO     | did not find any defunct processes belonging to 1132799
[2025-06-05 11:30:20] 2025-06-05 15:30:03,092 | INFO     | did not find any defunct processes belonging to 1132799
[2025-06-05 11:30:20] 2025-06-05 15:30:03,093 | INFO     | ready for new job
[2025-06-05 11:30:20] 2025-06-05 15:30:03,093 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 11:30:20] 2025-06-05 15:30:03,094 | INFO     | **************************************
[2025-06-05 11:30:20] 2025-06-05 15:30:03,094 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 11:30:20] 2025-06-05 15:30:03,095 | INFO     | **************************************
[2025-06-05 11:30:20] 2025-06-05 15:30:03,095 | INFO     | 
[2025-06-05 11:30:20] 2025-06-05 15:30:03,113 | INFO     | architecture information:
[2025-06-05 11:30:20] 2025-06-05 15:30:03,114 | INFO     | executing command: cat /etc/os-release
[2025-06-05 11:30:20] 2025-06-05 15:30:03,131 | INFO     | cat /etc/os-release:
[2025-06-05 11:30:20] NAME="CentOS Linux"
[2025-06-05 11:30:20] VERSION="7 (Core)"
[2025-06-05 11:30:20] ID="centos"
[2025-06-05 11:30:20] ID_LIKE="rhel fedora"
[2025-06-05 11:30:20] VERSION_ID="7"
[2025-06-05 11:30:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 11:30:20] ANSI_COLOR="0;31"
[2025-06-05 11:30:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 11:30:20] HOME_URL="https://www.centos.org/"
[2025-06-05 11:30:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 11:30:20] 
[2025-06-05 11:30:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 11:30:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 11:30:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 11:30:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 11:30:20] 
[2025-06-05 11:30:20] 2025-06-05 15:30:03,131 | INFO     | **************************************
[2025-06-05 11:30:20] 2025-06-05 15:30:03,634 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 11:30:20] 2025-06-05 15:30:03,656 | INFO     | sufficient remaining disk space (76548145152 B)
[2025-06-05 11:30:20] 2025-06-05 15:30:03,656 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 11:30:20] 2025-06-05 15:30:03,656 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 11:30:20] 2025-06-05 15:30:03,656 | INFO     | update_server=False
[2025-06-05 11:30:20] 2025-06-05 15:30:03,656 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 11:30:20] 2025-06-05 15:30:03,656 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 11:30:20] 2025-06-05 15:30:03,657 | INFO     | aborting loop
[2025-06-05 11:30:20] 2025-06-05 15:30:03,657 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 11:30:20] 2025-06-05 15:30:03,936 | INFO     | all payload control threads have been joined
[2025-06-05 11:30:20] 2025-06-05 15:30:03,937 | INFO     | all job control threads have been joined
[2025-06-05 11:30:20] 2025-06-05 15:30:03,953 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 11:30:20] 2025-06-05 15:30:03,954 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 11:30:20] 2025-06-05 15:30:03,954 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 11:30:20] 2025-06-05 15:30:04,506 | INFO     | all data control threads have been joined
[2025-06-05 11:30:20] 2025-06-05 15:30:04,661 | INFO     | [job] retrieve thread has finished
[2025-06-05 11:30:20] 2025-06-05 15:30:04,662 | INFO     | [job] job monitor thread has finished
[2025-06-05 11:30:20] 2025-06-05 15:30:04,915 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 11:30:20] 2025-06-05 15:30:04,941 | INFO     | [payload] control thread has finished
[2025-06-05 11:30:20] 2025-06-05 15:30:04,942 | INFO     | [job] control thread has finished
[2025-06-05 11:30:20] 2025-06-05 15:30:04,944 | INFO     | [job] validate thread has finished
[2025-06-05 11:30:20] 2025-06-05 15:30:04,961 | INFO     | [payload] failed_post thread has finished
[2025-06-05 11:30:20] 2025-06-05 15:30:05,130 | INFO     | [payload] validate_post thread has finished
[2025-06-05 11:30:20] 2025-06-05 15:30:05,259 | INFO     | [data] copytool_in thread has finished
[2025-06-05 11:30:20] 2025-06-05 15:30:05,512 | INFO     | [data] control thread has finished
[2025-06-05 11:30:20] 2025-06-05 15:30:05,546 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 11:30:20] 2025-06-05 15:30:05,629 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 11:30:20] 2025-06-05 15:30:06,140 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 11:30:20] 2025-06-05 15:30:06,591 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 11:30:20] 2025-06-05 15:30:06,920 | INFO     | [data] copytool_out thread has finished
[2025-06-05 11:30:20] 2025-06-05 15:30:07,596 | INFO     | [job] queue monitor thread has finished
[2025-06-05 11:30:20] 2025-06-05 15:30:07,663 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 11:30:20] 2025-06-05 15:30:13,835 | INFO     | job.realtimelogging is not enabled
[2025-06-05 11:30:20] 2025-06-05 15:30:14,841 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 11:30:20] 2025-06-05 15:30:15,136 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140640811689792)>', '<ExcThread(monitor, started 140640046282496)>']
[2025-06-05 11:30:20] 2025-06-05 15:30:16,017 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 11:30:20] 2025-06-05 15:30:16,017 | INFO     | [monitor] control thread has ended
[2025-06-05 11:30:20] 2025-06-05 15:30:20,160 | INFO     | all workflow threads have been joined
[2025-06-05 11:30:20] 2025-06-05 15:30:20,160 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 11:30:20] 2025-06-05 15:30:20,161 | INFO     | traces error code: 0
[2025-06-05 11:30:20] 2025-06-05 15:30:20,161 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 11:30:20] 2025-06-05 15:30:20,378 [wrapper] ==== pilot stdout END ====
[2025-06-05 11:30:20] 2025-06-05 15:30:20,381 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 11:30:20] 2025-06-05 15:30:20,384 [wrapper] pilotpid: 1126337
[2025-06-05 11:30:20] 2025-06-05 15:30:20,389 [wrapper] Pilot exit status: 0
[2025-06-05 11:30:20] 2025-06-05 15:30:20,400 [wrapper] pandaids: 6668946942
[2025-06-05 11:30:20] 2025-06-05 15:30:20,469 [wrapper] cleanup supervisor_pilot 1319330 1126338
[2025-06-05 11:30:20] 2025-06-05 15:30:20,472 [wrapper] Test setup, not cleaning
[2025-06-05 11:30:20] 2025-06-05 15:30:20,475 [wrapper] apfmon messages muted
[2025-06-05 11:30:20] 2025-06-05 15:30:20,478 [wrapper] ==== wrapper stdout END ====
[2025-06-05 11:30:20] 2025-06-05 15:30:20,482 [wrapper] ==== wrapper stderr END ====
[2025-06-05 11:30:20]  *** Error codes and diagnostics ***
[2025-06-05 11:30:20]     "exeErrorCode": 0,
[2025-06-05 11:30:20]     "exeErrorDiag": "",
[2025-06-05 11:30:20]     "pilotErrorCode": 0,
[2025-06-05 11:30:20]     "pilotErrorDiag": "",
[2025-06-05 11:30:20]  *** Listing of results directory ***
[2025-06-05 11:30:20] total 420228
[2025-06-05 11:30:20] -rw-r--r--. 1 boincer umatlas    495897 May 28 17:08 pilot3.tar.gz
[2025-06-05 11:30:20] -rwx------. 1 boincer umatlas     37140 May 28 17:38 runpilot2-wrapper.sh
[2025-06-05 11:30:20] -rw-r--r--. 1 boincer umatlas      5111 May 28 17:38 queuedata.json
[2025-06-05 11:30:20] -rw-r--r--. 1 boincer umatlas       100 Jun  5 09:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 11:30:20] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  5 09:22 run_atlas
[2025-06-05 11:30:20] -rw-r--r--. 1 boincer umatlas       105 Jun  5 09:22 job.xml
[2025-06-05 11:30:20] -rw-r--r--. 2 boincer umatlas 223264943 Jun  5 09:22 EVNT.44871834._003532.pool.root.1
[2025-06-05 11:30:20] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 09:22 start_atlas.sh
[2025-06-05 11:30:20] drwxrwx--x. 2 boincer umatlas      4096 Jun  5 09:22 shared
[2025-06-05 11:30:20] -rw-r--r--. 2 boincer umatlas    508881 Jun  5 09:22 input.tar.gz
[2025-06-05 11:30:20] -rw-r--r--. 1 boincer umatlas         0 Jun  5 09:22 boinc_lockfile
[2025-06-05 11:30:20] -rw-r--r--. 1 boincer umatlas      2559 Jun  5 09:22 pandaJob.out
[2025-06-05 11:30:20] -rw-------. 1 boincer umatlas    983210 Jun  5 09:22 agis_schedconf.cvmfs.json
[2025-06-05 11:30:20] -rw-------. 1 boincer umatlas   1598969 Jun  5 09:22 agis_ddmendpoints.agis.ALL.json
[2025-06-05 11:30:20] drwx------. 4 boincer umatlas      4096 Jun  5 09:22 pilot3
[2025-06-05 11:30:20] -rw-r--r--. 1 boincer umatlas      6855 Jun  5 11:28 init_data.xml
[2025-06-05 11:30:20] -rw-r--r--. 1 boincer umatlas       530 Jun  5 11:29 boinc_task_state.xml
[2025-06-05 11:30:20] -rw-------. 1 boincer umatlas 201137768 Jun  5 11:29 HITS.44871837._090784.pool.root.1
[2025-06-05 11:30:20] -rw-------. 1 boincer umatlas      1037 Jun  5 11:29 memory_monitor_summary.json
[2025-06-05 11:30:20] -rw-------. 1 boincer umatlas    328331 Jun  5 11:29 log.44871837._090784.job.log.tgz.1
[2025-06-05 11:30:20] -rw-------. 1 boincer umatlas        95 Jun  5 11:29 pilot_heartbeat.json
[2025-06-05 11:30:20] -rw-------. 1 boincer umatlas      7724 Jun  5 11:30 heartbeat.json
[2025-06-05 11:30:20] -rw-r--r--. 1 boincer umatlas      8192 Jun  5 11:30 boinc_mmap_file
[2025-06-05 11:30:20] -rw-r--r--. 1 boincer umatlas        27 Jun  5 11:30 wrapper_checkpoint.txt
[2025-06-05 11:30:20] -rw-------. 1 boincer umatlas      4425 Jun  5 11:30 pilotlog.txt
[2025-06-05 11:30:20] -rw-------. 1 boincer umatlas    709118 Jun  5 11:30 log.44871837._090784.job.log.1
[2025-06-05 11:30:20] -rw-------. 1 boincer umatlas       357 Jun  5 11:30 output.list
[2025-06-05 11:30:20] -rw-r--r--. 1 boincer umatlas       620 Jun  5 11:30 runtime_log
[2025-06-05 11:30:20] -rw-------. 1 boincer umatlas   1054720 Jun  5 11:30 result.tar.gz
[2025-06-05 11:30:20] -rw-------. 1 boincer umatlas       654 Jun  5 11:30 Us2MDmDfde7n9Rq4apOajLDm4fhM0noT9bVof3QYDmyBUKDm5w3QFn.diag
[2025-06-05 11:30:20] -rw-r--r--. 1 boincer umatlas      8664 Jun  5 11:30 runtime_log.err
[2025-06-05 11:30:20] -rw-r--r--. 1 boincer umatlas     21144 Jun  5 11:30 stderr.txt
[2025-06-05 11:30:20] HITS file was successfully produced:
[2025-06-05 11:30:20] -rw-------. 1 boincer umatlas 201137768 Jun  5 11:29 shared/HITS.pool.root.1
[2025-06-05 11:30:20]  *** Contents of shared directory: ***
[2025-06-05 11:30:20] total 416016
[2025-06-05 11:30:20] -rw-r--r--. 2 boincer umatlas 223264943 Jun  5 09:22 ATLAS.root_0
[2025-06-05 11:30:20] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 09:22 start_atlas.sh
[2025-06-05 11:30:20] -rw-r--r--. 2 boincer umatlas    508881 Jun  5 09:22 input.tar.gz
[2025-06-05 11:30:20] -rw-------. 1 boincer umatlas 201137768 Jun  5 11:29 HITS.pool.root.1
[2025-06-05 11:30:20] -rw-------. 1 boincer umatlas   1054720 Jun  5 11:30 result.tar.gz
11:30:22 (1122764): run_atlas exited; CPU time 53402.561357
11:30:22 (1122764): called boinc_finish(0)

</stderr_txt>
]]>

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