Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:42:09 (564053): wrapper (7.7.26015): starting
09:42:09 (564053): wrapper: running run_atlas (--nthreads 12)
[2025-06-05 09:42:09] Arguments: --nthreads 12
[2025-06-05 09:42:09] Threads: 12
[2025-06-05 09:42:09] Checking for CVMFS
[2025-06-05 09:42:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 09:42:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 09:42:09] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 09:42:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 09:42:09] 2.12.6.0 5559 2849 167832 146820 1 556 38548313 40960001 10028 16776704 0 17240457 99.922 3083778 36696 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-05 09:42:09] CVMFS is ok
[2025-06-05 09:42:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 09:42:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 09:42:09] Further information can be found at the LHC@home message board.
[2025-06-05 09:42:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 09:42:09] Checking for apptainer binary...
[2025-06-05 09:42:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 09:42:09] Running /usr/bin/apptainer --version
[2025-06-05 09:42:09] apptainer version 1.4.1-1.el9
[2025-06-05 09:42:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 09:42:09] c6-8-12-3.aglt2.org
[2025-06-05 09:42:09] apptainer works
[2025-06-05 09:42:09] Set ATHENA_PROC_NUMBER=12
[2025-06-05 09:42:09] Set ATHENA_CORE_NUMBER=12
[2025-06-05 09:42:09] Starting ATLAS job with PandaID=6668946550
[2025-06-05 09:42:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 11:24:46]  *** The last 200 lines of the pilot log: ***
[2025-06-05 11:24:46] 2025-06-05 15:24:34,005 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 11:24:46] 2025-06-05 15:24:34,006 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 11:24:46] 2025-06-05 15:24:34,006 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 11:24:46] 2025-06-05 15:24:34,008 | INFO     | fitting pss+swap vs Time
[2025-06-05 11:24:46] 2025-06-05 15:24:34,009 | INFO     | sum of square deviations: 310055804.91
[2025-06-05 11:24:46] 2025-06-05 15:24:34,009 | INFO     | sum of deviations: 2744623152.5499973
[2025-06-05 11:24:46] 2025-06-05 15:24:34,009 | INFO     | mean x: 1749133985.53
[2025-06-05 11:24:46] 2025-06-05 15:24:34,009 | INFO     | mean y: 2391136.65
[2025-06-05 11:24:46] 2025-06-05 15:24:34,010 | INFO     | -- intersect: -15480994620.282352
[2025-06-05 11:24:46] 2025-06-05 15:24:34,010 | INFO     | intersect: -15480994620.282352
[2025-06-05 11:24:46] 2025-06-05 15:24:34,010 | INFO     | chi2: 1.8479815390902867
[2025-06-05 11:24:46] 2025-06-05 15:24:34,010 | INFO     | sum of square deviations: 265832634.90526336
[2025-06-05 11:24:46] 2025-06-05 15:24:34,011 | INFO     | sum of deviations: 3530385258.7368383
[2025-06-05 11:24:46] 2025-06-05 15:24:34,011 | INFO     | mean x: 1749133833.031579
[2025-06-05 11:24:46] 2025-06-05 15:24:34,011 | INFO     | mean y: 2393749.4210526315
[2025-06-05 11:24:46] 2025-06-05 15:24:34,011 | INFO     | -- intersect: -23226944897.78161
[2025-06-05 11:24:46] 2025-06-05 15:24:34,011 | INFO     | intersect: -23226944897.78161
[2025-06-05 11:24:46] 2025-06-05 15:24:34,011 | INFO     | chi2: 1.8473567880101198
[2025-06-05 11:24:46] 2025-06-05 15:24:34,011 | INFO     | current chi2=1.8473567880101198 (change=0.03380721435531528 %)
[2025-06-05 11:24:46] 2025-06-05 15:24:34,011 | INFO     | right removable region: 94
[2025-06-05 11:24:46] 2025-06-05 15:24:34,012 | INFO     | sum of square deviations: 265830804.90526336
[2025-06-05 11:24:46] 2025-06-05 15:24:34,012 | INFO     | sum of deviations: -12288768997.578953
[2025-06-05 11:24:46] 2025-06-05 15:24:34,012 | INFO     | mean x: 1749134138.031579
[2025-06-05 11:24:46] 2025-06-05 15:24:34,012 | INFO     | mean y: 2441952.5263157897
[2025-06-05 11:24:46] 2025-06-05 15:24:34,012 | INFO     | -- intersect: 80861036861.07999
[2025-06-05 11:24:46] 2025-06-05 15:24:34,012 | INFO     | intersect: 80861036861.07999
[2025-06-05 11:24:46] 2025-06-05 15:24:34,012 | INFO     | chi2: 0.29718958431474524
[2025-06-05 11:24:46] 2025-06-05 15:24:34,013 | INFO     | current chi2=0.29718958431474524 (change=83.91815188472911 %)
[2025-06-05 11:24:46] 2025-06-05 15:24:34,013 | INFO     | sum of square deviations: 226024492.39999995
[2025-06-05 11:24:46] 2025-06-05 15:24:34,013 | INFO     | sum of deviations: -12440032690.199999
[2025-06-05 11:24:46] 2025-06-05 15:24:34,013 | INFO     | mean x: 1749134290.5333333
[2025-06-05 11:24:46] 2025-06-05 15:24:34,013 | INFO     | mean y: 2442138.9
[2025-06-05 11:24:46] 2025-06-05 15:24:34,013 | INFO     | -- intersect: 96272043378.7365
[2025-06-05 11:24:46] 2025-06-05 15:24:34,013 | INFO     | intersect: 96272043378.7365
[2025-06-05 11:24:46] 2025-06-05 15:24:34,014 | INFO     | chi2: 0.21607323725283384
[2025-06-05 11:24:46] 2025-06-05 15:24:34,014 | INFO     | current chi2=0.21607323725283384 (change=27.294478455208353 %)
[2025-06-05 11:24:46] 2025-06-05 15:24:34,014 | INFO     | sum of square deviations: 190404304.89411813
[2025-06-05 11:24:46] 2025-06-05 15:24:34,014 | INFO     | sum of deviations: -8270096465.352944
[2025-06-05 11:24:46] 2025-06-05 15:24:34,014 | INFO     | mean x: 1749134443.035294
[2025-06-05 11:24:46] 2025-06-05 15:24:34,014 | INFO     | mean y: 2424210.117647059
[2025-06-05 11:24:46] 2025-06-05 15:24:34,014 | INFO     | -- intersect: 75975026735.13617
[2025-06-05 11:24:46] 2025-06-05 15:24:34,015 | INFO     | intersect: 75975026735.13617
[2025-06-05 11:24:46] 2025-06-05 15:24:34,015 | INFO     | chi2: 0.1919921666607675
[2025-06-05 11:24:46] 2025-06-05 15:24:34,015 | INFO     | current chi2=0.1919921666607675 (change=11.14486499958732 %)
[2025-06-05 11:24:46] 2025-06-05 15:24:34,015 | INFO     | left removable region: 30
[2025-06-05 11:24:46] 2025-06-05 15:24:34,015 | INFO     | sum of square deviations: 81270789.9375
[2025-06-05 11:24:46] 2025-06-05 15:24:34,015 | INFO     | sum of deviations: 1042321375.6875
[2025-06-05 11:24:46] 2025-06-05 15:24:34,015 | INFO     | mean x: 1749134717.53125
[2025-06-05 11:24:46] 2025-06-05 15:24:34,015 | INFO     | mean y: 2382133.15625
[2025-06-05 11:24:46] 2025-06-05 15:24:34,016 | INFO     | -- intersect: -22430776280.118824
[2025-06-05 11:24:46] 2025-06-05 15:24:34,016 | INFO     | intersect: -22430776280.118824
[2025-06-05 11:24:46] 2025-06-05 15:24:34,016 | INFO     | chi2: 0.010161142329343316
[2025-06-05 11:24:46] 2025-06-05 15:24:34,016 | INFO     | -- intersect: -22430776280.118824
[2025-06-05 11:24:46] 2025-06-05 15:24:34,016 | INFO     | current memory leak: 12.83 B/s (using 64 data points, chi2=0.01)
[2025-06-05 11:24:46] 2025-06-05 15:24:34,017 | INFO     | ..............................
[2025-06-05 11:24:46] 2025-06-05 15:24:34,017 | INFO     | . Timing measurements:
[2025-06-05 11:24:46] 2025-06-05 15:24:34,017 | INFO     | . get job = 0 s
[2025-06-05 11:24:46] 2025-06-05 15:24:34,017 | INFO     | . initial setup = 2 s
[2025-06-05 11:24:46] 2025-06-05 15:24:34,017 | INFO     | . payload setup = 6 s
[2025-06-05 11:24:46] 2025-06-05 15:24:34,017 | INFO     | . stage-in = 0 s
[2025-06-05 11:24:46] 2025-06-05 15:24:34,017 | INFO     | . payload execution = 6100 s
[2025-06-05 11:24:46] 2025-06-05 15:24:34,017 | INFO     | . stage-out = 0 s
[2025-06-05 11:24:46] 2025-06-05 15:24:34,017 | INFO     | . log creation = 0 s
[2025-06-05 11:24:46] 2025-06-05 15:24:34,017 | INFO     | ..............................
[2025-06-05 11:24:46] 2025-06-05 15:24:34,111 | INFO     | 
[2025-06-05 11:24:46] 2025-06-05 15:24:34,112 | INFO     | job summary report
[2025-06-05 11:24:46] 2025-06-05 15:24:34,112 | INFO     | --------------------------------------------------
[2025-06-05 11:24:46] 2025-06-05 15:24:34,112 | INFO     | PanDA job id: 6668946550
[2025-06-05 11:24:46] 2025-06-05 15:24:34,112 | INFO     | task id: 44871837
[2025-06-05 11:24:46] 2025-06-05 15:24:34,112 | INFO     | errors: (none)
[2025-06-05 11:24:46] 2025-06-05 15:24:34,112 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 11:24:46] 2025-06-05 15:24:34,112 | INFO     | pilot state: finished 
[2025-06-05 11:24:46] 2025-06-05 15:24:34,112 | INFO     | transexitcode: 0
[2025-06-05 11:24:46] 2025-06-05 15:24:34,112 | INFO     | exeerrorcode: 0
[2025-06-05 11:24:46] 2025-06-05 15:24:34,112 | INFO     | exeerrordiag: 
[2025-06-05 11:24:46] 2025-06-05 15:24:34,113 | INFO     | exitcode: 0
[2025-06-05 11:24:46] 2025-06-05 15:24:34,113 | INFO     | exitmsg: OK
[2025-06-05 11:24:46] 2025-06-05 15:24:34,113 | INFO     | cpuconsumptiontime: 48886 s
[2025-06-05 11:24:46] 2025-06-05 15:24:34,113 | INFO     | nevents: 400
[2025-06-05 11:24:46] 2025-06-05 15:24:34,113 | INFO     | neventsw: 0
[2025-06-05 11:24:46] 2025-06-05 15:24:34,113 | INFO     | pid: 574950
[2025-06-05 11:24:46] 2025-06-05 15:24:34,113 | INFO     | pgrp: 574950
[2025-06-05 11:24:46] 2025-06-05 15:24:34,113 | INFO     | corecount: 12
[2025-06-05 11:24:46] 2025-06-05 15:24:34,113 | INFO     | event service: False
[2025-06-05 11:24:46] 2025-06-05 15:24:34,113 | INFO     | sizes: {0: 2397165, 1: 2397420, 5: 2397626, 12: 2397682, 6111: 2424433, 6112: 2433374, 6116: 2433558, 6119: 2433728}
[2025-06-05 11:24:46] 2025-06-05 15:24:34,113 | INFO     | --------------------------------------------------
[2025-06-05 11:24:46] 2025-06-05 15:24:34,113 | INFO     | 
[2025-06-05 11:24:46] 2025-06-05 15:24:34,114 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 11:24:46] 2025-06-05 15:24:34,134 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 11:24:46] 2025-06-05 15:24:34,134 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 11:24:46] 2025-06-05 15:24:34,134 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 11:24:46] 2025-06-05 15:24:34,135 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 11:24:46] 2025-06-05 15:24:34,135 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 11:24:46] 2025-06-05 15:24:34,135 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 11:24:46] 2025-06-05 15:24:34,135 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 11:24:46] 2025-06-05 15:24:34,135 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 11:24:46] 2025-06-05 15:24:34,135 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 11:24:46] 2025-06-05 15:24:34,135 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 11:24:46] 2025-06-05 15:24:34,135 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 11:24:46] 2025-06-05 15:24:34,136 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 11:24:46] 2025-06-05 15:24:34,136 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 11:24:46] 2025-06-05 15:24:34,136 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 11:24:46] 2025-06-05 15:24:34,136 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 11:24:46] 2025-06-05 15:24:34,136 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 11:24:46] 2025-06-05 15:24:34,136 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 11:24:46] 2025-06-05 15:24:34,136 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 11:24:46] 2025-06-05 15:24:34,136 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 11:24:46] 2025-06-05 15:24:34,136 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 11:24:46] 2025-06-05 15:24:34,136 | INFO     | job 6668946550 has completed (purged errors)
[2025-06-05 11:24:46] 2025-06-05 15:24:34,137 | INFO     | overall cleanup function is called
[2025-06-05 11:24:46] 2025-06-05 15:24:35,146 | INFO     | --- collectZombieJob: --- 10, [574950]
[2025-06-05 11:24:46] 2025-06-05 15:24:35,146 | INFO     | zombie collector waiting for pid 574950
[2025-06-05 11:24:46] 2025-06-05 15:24:35,146 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 11:24:46] 2025-06-05 15:24:35,146 | INFO     | collected zombie processes
[2025-06-05 11:24:46] 2025-06-05 15:24:35,146 | INFO     | will attempt to kill all subprocesses of pid=574950
[2025-06-05 11:24:46] 2025-06-05 15:24:35,357 | INFO     | process IDs to be killed: [574950] (in reverse order)
[2025-06-05 11:24:46] 2025-06-05 15:24:35,436 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 11:24:46] 2025-06-05 15:24:35,436 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 11:24:46] 2025-06-05 15:24:35,445 | INFO     | did not find any defunct processes belonging to 574950
[2025-06-05 11:24:46] 2025-06-05 15:24:35,454 | INFO     | did not find any defunct processes belonging to 574950
[2025-06-05 11:24:46] 2025-06-05 15:24:35,454 | INFO     | ready for new job
[2025-06-05 11:24:46] 2025-06-05 15:24:35,455 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 11:24:46] 2025-06-05 15:24:35,456 | INFO     | **************************************
[2025-06-05 11:24:46] 2025-06-05 15:24:35,457 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 11:24:46] 2025-06-05 15:24:35,457 | INFO     | **************************************
[2025-06-05 11:24:46] 2025-06-05 15:24:35,457 | INFO     | 
[2025-06-05 11:24:46] 2025-06-05 15:24:35,472 | INFO     | architecture information:
[2025-06-05 11:24:46] 2025-06-05 15:24:35,473 | INFO     | executing command: cat /etc/os-release
[2025-06-05 11:24:46] 2025-06-05 15:24:35,487 | INFO     | cat /etc/os-release:
[2025-06-05 11:24:46] NAME="CentOS Linux"
[2025-06-05 11:24:46] VERSION="7 (Core)"
[2025-06-05 11:24:46] ID="centos"
[2025-06-05 11:24:46] ID_LIKE="rhel fedora"
[2025-06-05 11:24:46] VERSION_ID="7"
[2025-06-05 11:24:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 11:24:46] ANSI_COLOR="0;31"
[2025-06-05 11:24:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 11:24:46] HOME_URL="https://www.centos.org/"
[2025-06-05 11:24:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 11:24:46] 
[2025-06-05 11:24:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 11:24:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 11:24:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 11:24:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 11:24:46] 
[2025-06-05 11:24:46] 2025-06-05 15:24:35,487 | INFO     | **************************************
[2025-06-05 11:24:46] 2025-06-05 15:24:35,990 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 11:24:46] 2025-06-05 15:24:36,007 | INFO     | sufficient remaining disk space (56495177728 B)
[2025-06-05 11:24:46] 2025-06-05 15:24:36,007 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 11:24:46] 2025-06-05 15:24:36,007 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 11:24:46] 2025-06-05 15:24:36,007 | INFO     | update_server=False
[2025-06-05 11:24:46] 2025-06-05 15:24:36,007 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 11:24:46] 2025-06-05 15:24:36,008 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 11:24:46] 2025-06-05 15:24:36,008 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 11:24:46] 2025-06-05 15:24:36,226 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-05 11:24:46] 2025-06-05 15:24:36,226 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-05 11:24:46] 2025-06-05 15:24:36,226 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 11:24:46] 2025-06-05 15:24:36,226 | INFO     | will abort loop
[2025-06-05 11:24:46] 2025-06-05 15:24:36,267 | INFO     | all data control threads have been joined
[2025-06-05 11:24:46] 2025-06-05 15:24:36,426 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 11:24:46] 2025-06-05 15:24:37,013 | INFO     | [job] retrieve thread has finished
[2025-06-05 11:24:46] 2025-06-05 15:24:37,013 | INFO     | [job] queue monitor thread has finished
[2025-06-05 11:24:46] 2025-06-05 15:24:37,099 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 11:24:46] 2025-06-05 15:24:37,115 | INFO     | all payload control threads have been joined
[2025-06-05 11:24:46] 2025-06-05 15:24:37,127 | INFO     | PID=568079 has CPU usage=12.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-05 11:24:46] 2025-06-05 15:24:37,127 | INFO     | .. there are 8 such processes running
[2025-06-05 11:24:46] 2025-06-05 15:24:37,128 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 11:24:46] 2025-06-05 15:24:37,128 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 11:24:46] 2025-06-05 15:24:37,128 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 11:24:46] 2025-06-05 15:24:37,232 | INFO     | [job] job monitor thread has finished
[2025-06-05 11:24:46] 2025-06-05 15:24:37,272 | INFO     | [data] control thread has finished
[2025-06-05 11:24:46] 2025-06-05 15:24:37,476 | INFO     | all job control threads have been joined
[2025-06-05 11:24:46] 2025-06-05 15:24:37,579 | INFO     | [data] copytool_in thread has finished
[2025-06-05 11:24:46] 2025-06-05 15:24:37,703 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 11:24:46] 2025-06-05 15:24:37,848 | INFO     | [job] validate thread has finished
[2025-06-05 11:24:46] 2025-06-05 15:24:37,884 | INFO     | [payload] validate_post thread has finished
[2025-06-05 11:24:46] 2025-06-05 15:24:38,013 | INFO     | [data] copytool_out thread has finished
[2025-06-05 11:24:46] 2025-06-05 15:24:38,103 | INFO     | [payload] failed_post thread has finished
[2025-06-05 11:24:46] 2025-06-05 15:24:38,121 | INFO     | [payload] control thread has finished
[2025-06-05 11:24:46] 2025-06-05 15:24:38,323 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 11:24:46] 2025-06-05 15:24:38,338 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 11:24:46] 2025-06-05 15:24:38,481 | INFO     | [job] control thread has finished
[2025-06-05 11:24:46] 2025-06-05 15:24:40,431 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 11:24:46] 2025-06-05 15:24:41,216 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140022593242944)>', '<ExcThread(monitor, started 140021814249216)>']
[2025-06-05 11:24:46] 2025-06-05 15:24:42,152 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 11:24:46] 2025-06-05 15:24:42,153 | INFO     | [monitor] control thread has ended
[2025-06-05 11:24:46] 2025-06-05 15:24:46,240 | INFO     | all workflow threads have been joined
[2025-06-05 11:24:46] 2025-06-05 15:24:46,241 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 11:24:46] 2025-06-05 15:24:46,241 | INFO     | traces error code: 0
[2025-06-05 11:24:46] 2025-06-05 15:24:46,242 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 11:24:46] 2025-06-05 15:24:46,418 [wrapper] ==== pilot stdout END ====
[2025-06-05 11:24:46] 2025-06-05 15:24:46,422 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 11:24:46] 2025-06-05 15:24:46,425 [wrapper] pilotpid: 568079
[2025-06-05 11:24:46] 2025-06-05 15:24:46,427 [wrapper] Pilot exit status: 0
[2025-06-05 11:24:46] 2025-06-05 15:24:46,438 [wrapper] pandaids: 6668946550
[2025-06-05 11:24:46] 2025-06-05 15:24:46,492 [wrapper] cleanup supervisor_pilot  717630 568080
[2025-06-05 11:24:46] 2025-06-05 15:24:46,495 [wrapper] Test setup, not cleaning
[2025-06-05 11:24:46] 2025-06-05 15:24:46,498 [wrapper] apfmon messages muted
[2025-06-05 11:24:46] 2025-06-05 15:24:46,500 [wrapper] ==== wrapper stdout END ====
[2025-06-05 11:24:46] 2025-06-05 15:24:46,502 [wrapper] ==== wrapper stderr END ====
[2025-06-05 11:24:46]  *** Error codes and diagnostics ***
[2025-06-05 11:24:46]     "exeErrorCode": 0,
[2025-06-05 11:24:46]     "exeErrorDiag": "",
[2025-06-05 11:24:46]     "pilotErrorCode": 0,
[2025-06-05 11:24:46]     "pilotErrorDiag": "",
[2025-06-05 11:24:46]  *** Listing of results directory ***
[2025-06-05 11:24:46] total 413756
[2025-06-05 11:24:46] -rw-r--r--. 1 boincer umatlas    495897 May 28 16:53 pilot3.tar.gz
[2025-06-05 11:24:46] -rwx------. 1 boincer umatlas     37140 May 28 16:57 runpilot2-wrapper.sh
[2025-06-05 11:24:46] -rw-r--r--. 1 boincer umatlas      5111 May 28 16:57 queuedata.json
[2025-06-05 11:24:46] -rw-r--r--. 1 boincer umatlas       100 Jun  5 09:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 11:24:46] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  5 09:42 run_atlas
[2025-06-05 11:24:46] -rw-r--r--. 1 boincer umatlas       105 Jun  5 09:42 job.xml
[2025-06-05 11:24:46] -rw-r--r--. 2 boincer umatlas 223629002 Jun  5 09:42 EVNT.44871834._003518.pool.root.1
[2025-06-05 11:24:46] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 09:42 start_atlas.sh
[2025-06-05 11:24:46] drwxrwx--x. 2 boincer umatlas      4096 Jun  5 09:42 shared
[2025-06-05 11:24:46] -rw-r--r--. 2 boincer umatlas    508873 Jun  5 09:42 input.tar.gz
[2025-06-05 11:24:46] -rw-r--r--. 1 boincer umatlas         0 Jun  5 09:42 boinc_lockfile
[2025-06-05 11:24:46] -rw-r--r--. 1 boincer umatlas      2559 Jun  5 09:42 pandaJob.out
[2025-06-05 11:24:46] -rw-------. 1 boincer umatlas    983210 Jun  5 09:42 agis_schedconf.cvmfs.json
[2025-06-05 11:24:46] -rw-------. 1 boincer umatlas   1598969 Jun  5 09:42 agis_ddmendpoints.agis.ALL.json
[2025-06-05 11:24:46] drwx------. 4 boincer umatlas      4096 Jun  5 09:42 pilot3
[2025-06-05 11:24:46] -rw-r--r--. 1 boincer umatlas      6842 Jun  5 11:20 init_data.xml
[2025-06-05 11:24:46] -rw-r--r--. 1 boincer umatlas       529 Jun  5 11:23 boinc_task_state.xml
[2025-06-05 11:24:46] -rw-------. 1 boincer umatlas 194274109 Jun  5 11:23 HITS.44871837._090451.pool.root.1
[2025-06-05 11:24:46] -rw-------. 1 boincer umatlas        95 Jun  5 11:24 pilot_heartbeat.json
[2025-06-05 11:24:46] -rw-------. 1 boincer umatlas      1037 Jun  5 11:24 memory_monitor_summary.json
[2025-06-05 11:24:46] -rw-r--r--. 1 boincer umatlas      8192 Jun  5 11:24 boinc_mmap_file
[2025-06-05 11:24:46] -rw-r--r--. 1 boincer umatlas        27 Jun  5 11:24 wrapper_checkpoint.txt
[2025-06-05 11:24:46] -rw-------. 1 boincer umatlas    396500 Jun  5 11:24 log.44871837._090451.job.log.tgz.1
[2025-06-05 11:24:46] -rw-------. 1 boincer umatlas      7719 Jun  5 11:24 heartbeat.json
[2025-06-05 11:24:46] -rw-------. 1 boincer umatlas      4933 Jun  5 11:24 pilotlog.txt
[2025-06-05 11:24:46] -rw-------. 1 boincer umatlas    582610 Jun  5 11:24 log.44871837._090451.job.log.1
[2025-06-05 11:24:46] -rw-------. 1 boincer umatlas       357 Jun  5 11:24 output.list
[2025-06-05 11:24:46] -rw-r--r--. 1 boincer umatlas       620 Jun  5 11:24 runtime_log
[2025-06-05 11:24:46] -rw-------. 1 boincer umatlas    993280 Jun  5 11:24 result.tar.gz
[2025-06-05 11:24:46] -rw-------. 1 boincer umatlas       654 Jun  5 11:24 E7OKDmI1ce7n9Rq4apOajLDm4fhM0noT9bVof3QYDmj7TKDmyS3ULn.diag
[2025-06-05 11:24:46] -rw-r--r--. 1 boincer umatlas      8666 Jun  5 11:24 runtime_log.err
[2025-06-05 11:24:46] -rw-r--r--. 1 boincer umatlas     20941 Jun  5 11:24 stderr.txt
[2025-06-05 11:24:46] HITS file was successfully produced:
[2025-06-05 11:24:46] -rw-------. 1 boincer umatlas 194274109 Jun  5 11:23 shared/HITS.pool.root.1
[2025-06-05 11:24:46]  *** Contents of shared directory: ***
[2025-06-05 11:24:46] total 409604
[2025-06-05 11:24:46] -rw-r--r--. 2 boincer umatlas 223629002 Jun  5 09:42 ATLAS.root_0
[2025-06-05 11:24:46] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 09:42 start_atlas.sh
[2025-06-05 11:24:46] -rw-r--r--. 2 boincer umatlas    508873 Jun  5 09:42 input.tar.gz
[2025-06-05 11:24:46] -rw-------. 1 boincer umatlas 194274109 Jun  5 11:23 HITS.pool.root.1
[2025-06-05 11:24:46] -rw-------. 1 boincer umatlas    993280 Jun  5 11:24 result.tar.gz
11:24:48 (564053): run_atlas exited; CPU time 48943.957865
11:24:48 (564053): called boinc_finish(0)

</stderr_txt>
]]>

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