Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:50:28 (4928): wrapper (7.7.26015): starting
08:50:28 (4928): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 08:50:28] Arguments: --nthreads 8
[2025-06-05 08:50:28] Threads: 8
[2025-06-05 08:50:28] Checking for CVMFS
[2025-06-05 08:50:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 08:50:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 08:50:28] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 08:50:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 08:50:29] 2.11.2.0 2932 15670 101572 146819 0 1 14613584 20275200 1 130560 0 6949124 99.955 3192239 7192 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-05 08:50:29] CVMFS is ok
[2025-06-05 08:50:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 08:50:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 08:50:29] Further information can be found at the LHC@home message board.
[2025-06-05 08:50:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 08:50:29] Checking for apptainer binary...
[2025-06-05 08:50:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 08:50:29] Running /usr/bin/apptainer --version
[2025-06-05 08:50:29] apptainer version 1.3.2-1.el7
[2025-06-05 08:50:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 08:50:31] c-204-17.aglt2.org
[2025-06-05 08:50:31] apptainer works
[2025-06-05 08:50:31] Set ATHENA_PROC_NUMBER=8
[2025-06-05 08:50:31] Set ATHENA_CORE_NUMBER=8
[2025-06-05 08:50:31] Starting ATLAS job with PandaID=6680726997
[2025-06-05 08:50:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 11:38:28]  *** The last 200 lines of the pilot log: ***
[2025-06-05 11:38:28] 2025-06-05 15:37:50,353 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 11:38:28] 2025-06-05 15:37:52,703 | INFO     | monitor loop #735: job 0:6680726997 is in state 'finished'
[2025-06-05 11:38:28] 2025-06-05 15:37:52,703 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 11:38:28] 2025-06-05 15:37:55,206 | INFO     | monitor loop #736: job 0:6680726997 is in state 'finished'
[2025-06-05 11:38:28] 2025-06-05 15:37:55,206 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 11:38:28] 2025-06-05 15:37:56,311 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-05 11:38:28] 2025-06-05 15:37:56,316 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1695.875
[2025-06-05 11:38:28] 2025-06-05 15:37:56,318 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6680726997/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 11:38:28] 2025-06-05 15:37:56,319 | INFO     | extracted standard info from prmon json
[2025-06-05 11:38:28] 2025-06-05 15:37:56,319 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 11:38:28] 2025-06-05 15:37:56,319 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 11:38:28] 2025-06-05 15:37:56,319 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 11:38:28] 2025-06-05 15:37:56,320 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 11:38:28] 2025-06-05 15:37:56,323 | INFO     | fitting pss+swap vs Time
[2025-06-05 11:38:28] 2025-06-05 15:37:56,324 | INFO     | sum of square deviations: 1367709365.0
[2025-06-05 11:38:28] 2025-06-05 15:37:56,325 | INFO     | sum of deviations: 12408727421.0
[2025-06-05 11:38:28] 2025-06-05 15:37:56,325 | INFO     | mean x: 1749132854.5
[2025-06-05 11:38:28] 2025-06-05 15:37:56,325 | INFO     | mean y: 2502162.5
[2025-06-05 11:38:28] 2025-06-05 15:37:56,325 | INFO     | -- intersect: -15866741238.203154
[2025-06-05 11:38:28] 2025-06-05 15:37:56,326 | INFO     | intersect: -15866741238.203154
[2025-06-05 11:38:28] 2025-06-05 15:37:56,326 | INFO     | chi2: 1.5845784615875216
[2025-06-05 11:38:28] 2025-06-05 15:37:56,326 | INFO     | sum of square deviations: 1246386160.0
[2025-06-05 11:38:28] 2025-06-05 15:37:56,327 | INFO     | sum of deviations: 11998898738.0
[2025-06-05 11:38:28] 2025-06-05 15:37:56,327 | INFO     | mean x: 1749132702.0
[2025-06-05 11:38:28] 2025-06-05 15:37:56,328 | INFO     | mean y: 2501647.169811321
[2025-06-05 11:38:28] 2025-06-05 15:37:56,328 | INFO     | -- intersect: -16836313516.36051
[2025-06-05 11:38:28] 2025-06-05 15:37:56,328 | INFO     | intersect: -16836313516.36051
[2025-06-05 11:38:28] 2025-06-05 15:37:56,328 | INFO     | chi2: 1.5860426405573589
[2025-06-05 11:38:28] 2025-06-05 15:37:56,328 | INFO     | current chi2=1.5860426405573589 (change=-0.09240179677631147 %)
[2025-06-05 11:38:28] 2025-06-05 15:37:56,329 | INFO     | right removable region: 158
[2025-06-05 11:38:28] 2025-06-05 15:37:56,329 | INFO     | sum of square deviations: 1246386160.0
[2025-06-05 11:38:28] 2025-06-05 15:37:56,330 | INFO     | sum of deviations: -12261374601.000002
[2025-06-05 11:38:28] 2025-06-05 15:37:56,330 | INFO     | mean x: 1749133007.0
[2025-06-05 11:38:28] 2025-06-05 15:37:56,330 | INFO     | mean y: 2532727.0125786164
[2025-06-05 11:38:28] 2025-06-05 15:37:56,330 | INFO     | -- intersect: 17209699906.886078
[2025-06-05 11:38:28] 2025-06-05 15:37:56,330 | INFO     | intersect: 17209699906.886078
[2025-06-05 11:38:28] 2025-06-05 15:37:56,331 | INFO     | chi2: 0.11638479769926992
[2025-06-05 11:38:28] 2025-06-05 15:37:56,331 | INFO     | current chi2=0.11638479769926992 (change=92.65515715878979 %)
[2025-06-05 11:38:28] 2025-06-05 15:37:56,331 | INFO     | sum of square deviations: 1132458442.5
[2025-06-05 11:38:28] 2025-06-05 15:37:56,332 | INFO     | sum of deviations: -13546943653.5
[2025-06-05 11:38:28] 2025-06-05 15:37:56,332 | INFO     | mean x: 1749133159.5
[2025-06-05 11:38:28] 2025-06-05 15:37:56,332 | INFO     | mean y: 2534401.590909091
[2025-06-05 11:38:28] 2025-06-05 15:37:56,332 | INFO     | -- intersect: 20926400094.980293
[2025-06-05 11:38:28] 2025-06-05 15:37:56,333 | INFO     | intersect: 20926400094.980293
[2025-06-05 11:38:28] 2025-06-05 15:37:56,333 | INFO     | chi2: 0.09816152726808022
[2025-06-05 11:38:28] 2025-06-05 15:37:56,333 | INFO     | current chi2=0.09816152726808022 (change=15.657775578454272 %)
[2025-06-05 11:38:28] 2025-06-05 15:37:56,333 | INFO     | left removable region: 20
[2025-06-05 11:38:28] 2025-06-05 15:37:56,333 | INFO     | sum of square deviations: 814878534.5
[2025-06-05 11:38:28] 2025-06-05 15:37:56,334 | INFO     | sum of deviations: -3371152525.5
[2025-06-05 11:38:28] 2025-06-05 15:37:56,334 | INFO     | mean x: 1749133281.5
[2025-06-05 11:38:28] 2025-06-05 15:37:56,334 | INFO     | mean y: 2519375.137681159
[2025-06-05 11:38:28] 2025-06-05 15:37:56,335 | INFO     | -- intersect: 7238683821.392127
[2025-06-05 11:38:28] 2025-06-05 15:37:56,335 | INFO     | intersect: 7238683821.392127
[2025-06-05 11:38:28] 2025-06-05 15:37:56,335 | INFO     | chi2: 0.04554720492812402
[2025-06-05 11:38:28] 2025-06-05 15:37:56,335 | INFO     | -- intersect: 7238683821.392127
[2025-06-05 11:38:28] 2025-06-05 15:37:56,335 | INFO     | current memory leak: -4.14 B/s (using 138 data points, chi2=0.05)
[2025-06-05 11:38:28] 2025-06-05 15:37:56,336 | INFO     | could have reported an average CPU frequency of 2025 MHz (9 samples)
[2025-06-05 11:38:28] 2025-06-05 15:37:56,336 | INFO     | ..............................
[2025-06-05 11:38:28] 2025-06-05 15:37:56,336 | INFO     | . Timing measurements:
[2025-06-05 11:38:28] 2025-06-05 15:37:56,336 | INFO     | . get job = 0 s
[2025-06-05 11:38:28] 2025-06-05 15:37:56,336 | INFO     | . initial setup = 2 s
[2025-06-05 11:38:28] 2025-06-05 15:37:56,336 | INFO     | . payload setup = 12 s
[2025-06-05 11:38:28] 2025-06-05 15:37:56,336 | INFO     | . stage-in = 0 s
[2025-06-05 11:38:28] 2025-06-05 15:37:56,337 | INFO     | . payload execution = 9986 s
[2025-06-05 11:38:28] 2025-06-05 15:37:56,337 | INFO     | . stage-out = 1 s
[2025-06-05 11:38:28] 2025-06-05 15:37:56,337 | INFO     | . log creation = 0 s
[2025-06-05 11:38:28] 2025-06-05 15:37:56,337 | INFO     | ..............................
[2025-06-05 11:38:28] 2025-06-05 15:37:56,435 | INFO     | 
[2025-06-05 11:38:28] 2025-06-05 15:37:56,435 | INFO     | job summary report
[2025-06-05 11:38:28] 2025-06-05 15:37:56,436 | INFO     | --------------------------------------------------
[2025-06-05 11:38:28] 2025-06-05 15:37:56,436 | INFO     | PanDA job id: 6680726997
[2025-06-05 11:38:28] 2025-06-05 15:37:56,436 | INFO     | task id: 44871837
[2025-06-05 11:38:28] 2025-06-05 15:37:56,436 | INFO     | errors: (none)
[2025-06-05 11:38:28] 2025-06-05 15:37:56,436 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 11:38:28] 2025-06-05 15:37:56,436 | INFO     | pilot state: finished 
[2025-06-05 11:38:28] 2025-06-05 15:37:56,437 | INFO     | transexitcode: 0
[2025-06-05 11:38:28] 2025-06-05 15:37:56,437 | INFO     | exeerrorcode: 0
[2025-06-05 11:38:28] 2025-06-05 15:37:56,437 | INFO     | exeerrordiag: 
[2025-06-05 11:38:28] 2025-06-05 15:37:56,437 | INFO     | exitcode: 0
[2025-06-05 11:38:28] 2025-06-05 15:37:56,437 | INFO     | exitmsg: OK
[2025-06-05 11:38:28] 2025-06-05 15:37:56,437 | INFO     | cpuconsumptiontime: 74635 s
[2025-06-05 11:38:28] 2025-06-05 15:37:56,438 | INFO     | nevents: 400
[2025-06-05 11:38:28] 2025-06-05 15:37:56,438 | INFO     | neventsw: 0
[2025-06-05 11:38:28] 2025-06-05 15:37:56,438 | INFO     | pid: 15156
[2025-06-05 11:38:28] 2025-06-05 15:37:56,438 | INFO     | pgrp: 15156
[2025-06-05 11:38:28] 2025-06-05 15:37:56,438 | INFO     | corecount: 8
[2025-06-05 11:38:28] 2025-06-05 15:37:56,438 | INFO     | event service: False
[2025-06-05 11:38:28] 2025-06-05 15:37:56,439 | INFO     | sizes: {0: 2397511, 1: 2397710, 6: 2397972, 11: 2398000, 10002: 2426573, 10004: 2435698, 10012: 2435900}
[2025-06-05 11:38:28] 2025-06-05 15:37:56,439 | INFO     | --------------------------------------------------
[2025-06-05 11:38:28] 2025-06-05 15:37:56,439 | INFO     | 
[2025-06-05 11:38:28] 2025-06-05 15:37:56,439 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 11:38:28] 2025-06-05 15:37:56,467 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 11:38:28] 2025-06-05 15:37:56,468 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 11:38:28] 2025-06-05 15:37:56,468 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 11:38:28] 2025-06-05 15:37:56,468 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 11:38:28] 2025-06-05 15:37:56,468 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 11:38:28] 2025-06-05 15:37:56,469 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 11:38:28] 2025-06-05 15:37:56,469 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 11:38:28] 2025-06-05 15:37:56,469 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 11:38:28] 2025-06-05 15:37:56,469 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 11:38:28] 2025-06-05 15:37:56,469 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 11:38:28] 2025-06-05 15:37:56,470 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 11:38:28] 2025-06-05 15:37:56,470 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 11:38:28] 2025-06-05 15:37:56,470 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 11:38:28] 2025-06-05 15:37:56,470 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 11:38:28] 2025-06-05 15:37:56,470 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 11:38:28] 2025-06-05 15:37:56,471 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 11:38:28] 2025-06-05 15:37:56,471 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 11:38:28] 2025-06-05 15:37:56,471 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 11:38:28] 2025-06-05 15:37:56,471 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 11:38:28] 2025-06-05 15:37:56,471 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 11:38:28] 2025-06-05 15:37:56,472 | INFO     | job 6680726997 has completed (purged errors)
[2025-06-05 11:38:28] 2025-06-05 15:37:56,472 | INFO     | overall cleanup function is called
[2025-06-05 11:38:28] 2025-06-05 15:37:57,480 | INFO     | --- collectZombieJob: --- 10, [15156]
[2025-06-05 11:38:28] 2025-06-05 15:37:57,480 | INFO     | zombie collector waiting for pid 15156
[2025-06-05 11:38:28] 2025-06-05 15:37:57,480 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 11:38:28] 2025-06-05 15:37:57,480 | INFO     | collected zombie processes
[2025-06-05 11:38:28] 2025-06-05 15:37:57,480 | INFO     | will attempt to kill all subprocesses of pid=15156
[2025-06-05 11:38:28] 2025-06-05 15:37:57,578 | INFO     | process IDs to be killed: [15156] (in reverse order)
[2025-06-05 11:38:28] 2025-06-05 15:37:57,628 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 11:38:28] 2025-06-05 15:37:57,629 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 11:38:28] 2025-06-05 15:37:57,633 | INFO     | did not find any defunct processes belonging to 15156
[2025-06-05 11:38:28] 2025-06-05 15:37:57,637 | INFO     | did not find any defunct processes belonging to 15156
[2025-06-05 11:38:28] 2025-06-05 15:37:57,637 | INFO     | ready for new job
[2025-06-05 11:38:28] 2025-06-05 15:37:57,637 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 11:38:28] 2025-06-05 15:37:57,639 | INFO     | ***************************************
[2025-06-05 11:38:28] 2025-06-05 15:37:57,639 | INFO     | ***  PanDA Pilot version 3.10.3.82  ***
[2025-06-05 11:38:28] 2025-06-05 15:37:57,639 | INFO     | ***************************************
[2025-06-05 11:38:28] 2025-06-05 15:37:57,640 | INFO     | 
[2025-06-05 11:38:28] 2025-06-05 15:37:57,640 | INFO     | architecture information:
[2025-06-05 11:38:28] 2025-06-05 15:37:57,641 | INFO     | executing command: cat /etc/os-release
[2025-06-05 11:38:28] 2025-06-05 15:37:57,658 | INFO     | cat /etc/os-release:
[2025-06-05 11:38:28] NAME="CentOS Linux"
[2025-06-05 11:38:28] VERSION="7 (Core)"
[2025-06-05 11:38:28] ID="centos"
[2025-06-05 11:38:28] ID_LIKE="rhel fedora"
[2025-06-05 11:38:28] VERSION_ID="7"
[2025-06-05 11:38:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 11:38:28] ANSI_COLOR="0;31"
[2025-06-05 11:38:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 11:38:28] HOME_URL="https://www.centos.org/"
[2025-06-05 11:38:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 11:38:28] 
[2025-06-05 11:38:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 11:38:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 11:38:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 11:38:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 11:38:28] 
[2025-06-05 11:38:28] 2025-06-05 15:37:57,659 | INFO     | ***************************************
[2025-06-05 11:38:28] 2025-06-05 15:37:58,162 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 11:38:28] 2025-06-05 15:37:58,181 | INFO     | sufficient remaining disk space (18576572416 B)
[2025-06-05 11:38:28] 2025-06-05 15:37:58,181 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 11:38:28] 2025-06-05 15:37:58,182 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 11:38:28] 2025-06-05 15:37:58,182 | INFO     | update_server=False
[2025-06-05 11:38:28] 2025-06-05 15:37:58,182 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 11:38:28] 2025-06-05 15:37:58,183 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 11:38:28] 2025-06-05 15:37:58,428 | INFO     | all payload control threads have been joined
[2025-06-05 11:38:28] 2025-06-05 15:37:58,714 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 11:38:28] 2025-06-05 15:37:58,714 | INFO     | aborting loop
[2025-06-05 11:38:28] 2025-06-05 15:37:59,121 | INFO     | all data control threads have been joined
[2025-06-05 11:38:28] 2025-06-05 15:37:59,178 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 11:38:28] 2025-06-05 15:37:59,188 | INFO     | [job] retrieve thread has finished
[2025-06-05 11:38:28] 2025-06-05 15:37:59,188 | INFO     | [job] queue monitor thread has finished
[2025-06-05 11:38:28] 2025-06-05 15:37:59,223 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 11:38:28] 2025-06-05 15:37:59,266 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 11:38:28] 2025-06-05 15:37:59,279 | INFO     | [payload] validate_post thread has finished
[2025-06-05 11:38:28] 2025-06-05 15:37:59,328 | INFO     | all job control threads have been joined
[2025-06-05 11:38:28] 2025-06-05 15:37:59,434 | INFO     | [payload] control thread has finished
[2025-06-05 11:38:28] 2025-06-05 15:37:59,716 | INFO     | [job] job monitor thread has finished
[2025-06-05 11:38:28] 2025-06-05 15:37:59,729 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 11:38:28] 2025-06-05 15:37:59,785 | INFO     | [payload] failed_post thread has finished
[2025-06-05 11:38:28] 2025-06-05 15:37:59,824 | INFO     | [data] copytool_in thread has finished
[2025-06-05 11:38:28] 2025-06-05 15:37:59,997 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 11:38:28] 2025-06-05 15:38:00,127 | INFO     | [data] control thread has finished
[2025-06-05 11:38:28] 2025-06-05 15:38:00,297 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 11:38:28] 2025-06-05 15:38:00,333 | INFO     | [job] control thread has finished
[2025-06-05 11:38:28] 2025-06-05 15:38:00,564 | INFO     | [job] validate thread has finished
[2025-06-05 11:38:28] 2025-06-05 15:38:01,183 | INFO     | [data] copytool_out thread has finished
[2025-06-05 11:38:28] 2025-06-05 15:38:03,272 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 11:38:28] 2025-06-05 15:38:04,845 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140592765572928)>', '<ExcThread(monitor, started 140592189269760)>']
[2025-06-05 11:38:28] 2025-06-05 15:38:09,907 | INFO     | all workflow threads have been joined
[2025-06-05 11:38:28] 2025-06-05 15:38:09,915 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 11:38:28] 2025-06-05 15:38:09,916 | INFO     | traces error code: 0
[2025-06-05 11:38:28] 2025-06-05 15:38:09,916 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 11:38:28] 2025-06-05 15:38:28,379 | INFO     | PID=8689 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-06-05 11:38:28] 2025-06-05 15:38:28,380 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 11:38:28] 2025-06-05 15:38:28,380 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 11:38:28] 2025-06-05 15:38:28,380 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 11:38:28] 2025-06-05 15:38:28,380 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 11:38:28] 2025-06-05 15:38:28,381 | INFO     | [monitor] control thread has ended
[2025-06-05 11:38:28] 2025-06-05 15:38:28,501 [wrapper] ==== pilot stdout END ====
[2025-06-05 11:38:28] 2025-06-05 15:38:28,506 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 11:38:28] 2025-06-05 15:38:28,511 [wrapper] pilotpid: 8689
[2025-06-05 11:38:28] 2025-06-05 15:38:28,515 [wrapper] Pilot exit status: 0
[2025-06-05 11:38:28] 2025-06-05 15:38:28,535 [wrapper] pandaids: 6680726997
[2025-06-05 11:38:28] 2025-06-05 15:38:28,579 [wrapper] cleanup supervisor_pilot  1901 8690
[2025-06-05 11:38:28] 2025-06-05 15:38:28,584 [wrapper] Test setup, not cleaning
[2025-06-05 11:38:28] 2025-06-05 15:38:28,589 [wrapper] apfmon messages muted
[2025-06-05 11:38:28] 2025-06-05 15:38:28,594 [wrapper] ==== wrapper stdout END ====
[2025-06-05 11:38:28] 2025-06-05 15:38:28,599 [wrapper] ==== wrapper stderr END ====
[2025-06-05 11:38:28]  *** Error codes and diagnostics ***
[2025-06-05 11:38:28]     "exeErrorCode": 0,
[2025-06-05 11:38:28]     "exeErrorDiag": "",
[2025-06-05 11:38:28]     "pilotErrorCode": 0,
[2025-06-05 11:38:28]     "pilotErrorDiag": "",
[2025-06-05 11:38:28]  *** Listing of results directory ***
[2025-06-05 11:38:28] total 417960
[2025-06-05 11:38:28] -rw-r--r-- 1 boincer umatlas    529402 Jun  5 08:41 pilot3.tar.gz
[2025-06-05 11:38:28] -rw-r--r-- 1 boincer umatlas      5112 Jun  5 08:48 queuedata.json
[2025-06-05 11:38:28] -rwx------ 1 boincer umatlas     37140 Jun  5 08:49 runpilot2-wrapper.sh
[2025-06-05 11:38:28] -rw-r--r-- 1 boincer umatlas       100 Jun  5 08:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 11:38:28] -rwxr-xr-x 1 boincer umatlas      7986 Jun  5 08:50 run_atlas
[2025-06-05 11:38:28] -rw-r--r-- 1 boincer umatlas       105 Jun  5 08:50 job.xml
[2025-06-05 11:38:28] -rw-r--r-- 2 boincer umatlas 221396205 Jun  5 08:50 EVNT.44871834._003098.pool.root.1
[2025-06-05 11:38:28] -rw-r--r-- 2 boincer umatlas     15095 Jun  5 08:50 start_atlas.sh
[2025-06-05 11:38:28] drwxrwx--x 2 boincer umatlas      4096 Jun  5 08:50 shared
[2025-06-05 11:38:28] -rw-r--r-- 2 boincer umatlas    541915 Jun  5 08:50 input.tar.gz
[2025-06-05 11:38:28] -rw-r--r-- 1 boincer umatlas         0 Jun  5 08:50 boinc_lockfile
[2025-06-05 11:38:28] -rw-r--r-- 1 boincer umatlas      2558 Jun  5 08:50 pandaJob.out
[2025-06-05 11:38:28] -rw------- 1 boincer umatlas    983210 Jun  5 08:50 agis_schedconf.cvmfs.json
[2025-06-05 11:38:28] -rw------- 1 boincer umatlas   1598969 Jun  5 08:50 agis_ddmendpoints.agis.ALL.json
[2025-06-05 11:38:28] drwx------ 4 boincer umatlas      4096 Jun  5 08:50 pilot3
[2025-06-05 11:38:28] -rw-r--r-- 1 boincer umatlas      5904 Jun  5 11:31 init_data.xml
[2025-06-05 11:38:28] -rw------- 1 boincer umatlas 200190263 Jun  5 11:37 HITS.44871837._102299.pool.root.1
[2025-06-05 11:38:28] -rw-r--r-- 1 boincer umatlas       530 Jun  5 11:37 boinc_task_state.xml
[2025-06-05 11:38:28] -rw------- 1 boincer umatlas      1049 Jun  5 11:37 memory_monitor_summary.json
[2025-06-05 11:38:28] -rw------- 1 boincer umatlas    358062 Jun  5 11:37 log.44871837._102299.job.log.tgz.1
[2025-06-05 11:38:28] -rw------- 1 boincer umatlas      7770 Jun  5 11:37 heartbeat.json
[2025-06-05 11:38:28] -rw-r--r-- 1 boincer umatlas      8192 Jun  5 11:38 boinc_mmap_file
[2025-06-05 11:38:28] -rw-r--r-- 1 boincer umatlas        28 Jun  5 11:38 wrapper_checkpoint.txt
[2025-06-05 11:38:28] -rw------- 1 boincer umatlas        95 Jun  5 11:38 pilot_heartbeat.json
[2025-06-05 11:38:28] -rw------- 1 boincer umatlas       744 Jun  5 11:38 pilotlog.txt
[2025-06-05 11:38:28] -rw------- 1 boincer umatlas    900506 Jun  5 11:38 log.44871837._102299.job.log.1
[2025-06-05 11:38:28] -rw------- 1 boincer umatlas       357 Jun  5 11:38 output.list
[2025-06-05 11:38:28] -rw-r--r-- 1 boincer umatlas       620 Jun  5 11:38 runtime_log
[2025-06-05 11:38:28] -rw------- 1 boincer umatlas   1280000 Jun  5 11:38 result.tar.gz
[2025-06-05 11:38:28] -rw-r--r-- 1 boincer umatlas      8661 Jun  5 11:38 runtime_log.err
[2025-06-05 11:38:28] -rw------- 1 boincer umatlas       663 Jun  5 11:38 AAzMDmnDPh7n9Rq4apOajLDm4fhM0noT9bVof3QYDm64aKDmPjMyWn.diag
[2025-06-05 11:38:28] -rw-r--r-- 1 boincer umatlas     21227 Jun  5 11:38 stderr.txt
[2025-06-05 11:38:28] HITS file was successfully produced:
[2025-06-05 11:38:28] -rw------- 1 boincer umatlas 200190263 Jun  5 11:37 shared/HITS.pool.root.1
[2025-06-05 11:38:28]  *** Contents of shared directory: ***
[2025-06-05 11:38:28] total 413508
[2025-06-05 11:38:28] -rw-r--r-- 2 boincer umatlas 221396205 Jun  5 08:50 ATLAS.root_0
[2025-06-05 11:38:28] -rw-r--r-- 2 boincer umatlas     15095 Jun  5 08:50 start_atlas.sh
[2025-06-05 11:38:28] -rw-r--r-- 2 boincer umatlas    541915 Jun  5 08:50 input.tar.gz
[2025-06-05 11:38:28] -rw------- 1 boincer umatlas 200190263 Jun  5 11:37 HITS.pool.root.1
[2025-06-05 11:38:28] -rw------- 1 boincer umatlas   1280000 Jun  5 11:38 result.tar.gz
11:38:29 (4928): run_atlas exited; CPU time 74572.420320
11:38:29 (4928): called boinc_finish(0)

</stderr_txt>
]]>

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