Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:45:18 (1814370): wrapper (7.7.26015): starting
08:45:18 (1814370): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 08:45:18] Arguments: --nthreads 8
[2025-06-05 08:45:18] Threads: 8
[2025-06-05 08:45:18] Checking for CVMFS
[2025-06-05 08:45:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 08:45:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 08:45:18] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 08:45:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 08:45:19] 2.12.6.0 4995 38769 571660 146819 0 533 32594998 32935937 30451 16776704 1 484976893 99.678 400467324 12835 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-05 08:45:19] CVMFS is ok
[2025-06-05 08:45:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 08:45:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 08:45:19] Further information can be found at the LHC@home message board.
[2025-06-05 08:45:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 08:45:19] Checking for apptainer binary...
[2025-06-05 08:45:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 08:45:19] Running /usr/bin/apptainer --version
[2025-06-05 08:45:19] apptainer version 1.4.1-1.el9
[2025-06-05 08:45:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 08:45:19] c7-6-31.aglt2.org
[2025-06-05 08:45:19] apptainer works
[2025-06-05 08:45:19] Set ATHENA_PROC_NUMBER=8
[2025-06-05 08:45:19] Set ATHENA_CORE_NUMBER=8
[2025-06-05 08:45:19] Starting ATLAS job with PandaID=6680720646
[2025-06-05 08:45:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 09:56:12]  *** The last 200 lines of the pilot log: ***
[2025-06-05 09:56:12]  is_tar=False
[2025-06-05 09:56:12]  lfn=log.45006595._057091.job.log.tgz.1
[2025-06-05 09:56:12]  mtime=0
[2025-06-05 09:56:12]  protocol_id=None
[2025-06-05 09:56:12]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-05 09:56:12]  replicas=None
[2025-06-05 09:56:12]  scope=mc23_13p6TeV
[2025-06-05 09:56:12]  status=None
[2025-06-05 09:56:12]  status_code=0
[2025-06-05 09:56:12]  storage_token=
[2025-06-05 09:56:12]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6680720646/log.45006595._057091.job.log.tgz.1
[2025-06-05 09:56:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1c/1e/log.45006595._057091.job.log.tgz.1
[2025-06-05 09:56:12]  workdir=None
[2025-06-05 09:56:12] ]
[2025-06-05 09:56:12] 2025-06-05 13:55:34,050 | INFO     | transferring file log.45006595._057091.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6680720646/log.45006595._057091.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-05 09:56:12] 2025-06-05 13:55:34,050 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6680720646/log.45006595._057091.job.log.tgz.1 /tmp/boinchome/slots/1/log.45006595._057091.job
[2025-06-05 09:56:12] 2025-06-05 13:55:34,069 | INFO     | adding to output.list: log.45006595._057091.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1c/1e/log.45006595._057091.job.log.tg
[2025-06-05 09:56:12] 2025-06-05 13:55:34,069 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-05 09:56:12] 2025-06-05 13:55:34,069 | INFO     | summary of transferred files:
[2025-06-05 09:56:12] 2025-06-05 13:55:34,069 | INFO     |  -- lfn=log.45006595._057091.job.log.tgz.1, status_code=0, status=transferred
[2025-06-05 09:56:12] 2025-06-05 13:55:34,070 | INFO     | stage-out finished correctly
[2025-06-05 09:56:12] 2025-06-05 13:55:34,137 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-05 09:56:12] 2025-06-05 13:55:34,674 | INFO     | monitor loop #298: job 0:6680720646 is in state 'finished'
[2025-06-05 09:56:12] 2025-06-05 13:55:34,674 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 09:56:12] 2025-06-05 13:55:35,499 | INFO     | job 6680720646 has state=finished
[2025-06-05 09:56:12] 2025-06-05 13:55:35,500 | INFO     | preparing for final server update for job 6680720646 in state='finished'
[2025-06-05 09:56:12] 2025-06-05 13:55:35,500 | INFO     | this job has now completed (state=finished)
[2025-06-05 09:56:12] 2025-06-05 13:55:35,500 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-05 09:56:12] 2025-06-05 13:55:35,500 | INFO     | log transfer has been attempted: DONE
[2025-06-05 09:56:12] 2025-06-05 13:55:35,500 | INFO     | job 6680720646 has finished - writing final server update
[2025-06-05 09:56:12] 2025-06-05 13:55:35,501 | INFO     | total number of processed events: 400 (read)
[2025-06-05 09:56:12] 2025-06-05 13:55:35,501 | INFO     | executing command: lscpu
[2025-06-05 09:56:12] 2025-06-05 13:55:35,588 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 09:56:12] 2025-06-05 13:55:37,177 | INFO     | monitor loop #299: job 0:6680720646 is in state 'finished'
[2025-06-05 09:56:12] 2025-06-05 13:55:37,177 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 09:56:12] 2025-06-05 13:55:39,250 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 09:56:12] 2025-06-05 13:55:39,262 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3287.7989999999977
[2025-06-05 09:56:12] 2025-06-05 13:55:39,275 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6680720646/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 09:56:12] 2025-06-05 13:55:39,275 | INFO     | extracted standard info from prmon json
[2025-06-05 09:56:12] 2025-06-05 13:55:39,276 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 09:56:12] 2025-06-05 13:55:39,276 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 09:56:12] 2025-06-05 13:55:39,276 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 09:56:12] 2025-06-05 13:55:39,276 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 09:56:12] 2025-06-05 13:55:39,278 | INFO     | fitting pss+swap vs Time
[2025-06-05 09:56:12] 2025-06-05 13:55:39,278 | INFO     | sum of square deviations: 73882315.5
[2025-06-05 09:56:12] 2025-06-05 13:55:39,278 | INFO     | sum of deviations: -9564926575.0
[2025-06-05 09:56:12] 2025-06-05 13:55:39,278 | INFO     | mean x: 1749129726.5
[2025-06-05 09:56:12] 2025-06-05 13:55:39,278 | INFO     | mean y: 2439163.806451613
[2025-06-05 09:56:12] 2025-06-05 13:55:39,278 | INFO     | -- intersect: 226447662095.7046
[2025-06-05 09:56:12] 2025-06-05 13:55:39,278 | INFO     | intersect: 226447662095.7046
[2025-06-05 09:56:12] 2025-06-05 13:55:39,279 | INFO     | chi2: 0.11315939295908997
[2025-06-05 09:56:12] 2025-06-05 13:55:39,279 | INFO     | -- intersect: 226447662095.7046
[2025-06-05 09:56:12] 2025-06-05 13:55:39,279 | INFO     | current memory leak: -129.46 B/s (using 62 data points, chi2=0.11)
[2025-06-05 09:56:12] 2025-06-05 13:55:39,279 | INFO     | could have reported an average CPU frequency of 3294 MHz (6 samples)
[2025-06-05 09:56:12] 2025-06-05 13:55:39,279 | INFO     | ..............................
[2025-06-05 09:56:12] 2025-06-05 13:55:39,279 | INFO     | . Timing measurements:
[2025-06-05 09:56:12] 2025-06-05 13:55:39,279 | INFO     | . get job = 0 s
[2025-06-05 09:56:12] 2025-06-05 13:55:39,279 | INFO     | . initial setup = 3 s
[2025-06-05 09:56:12] 2025-06-05 13:55:39,279 | INFO     | . payload setup = 7 s
[2025-06-05 09:56:12] 2025-06-05 13:55:39,279 | INFO     | . stage-in = 0 s
[2025-06-05 09:56:12] 2025-06-05 13:55:39,279 | INFO     | . payload execution = 4174 s
[2025-06-05 09:56:12] 2025-06-05 13:55:39,280 | INFO     | . stage-out = 0 s
[2025-06-05 09:56:12] 2025-06-05 13:55:39,280 | INFO     | . log creation = 0 s
[2025-06-05 09:56:12] 2025-06-05 13:55:39,280 | INFO     | ..............................
[2025-06-05 09:56:12] 2025-06-05 13:55:39,330 | INFO     | 
[2025-06-05 09:56:12] 2025-06-05 13:55:39,330 | INFO     | job summary report
[2025-06-05 09:56:12] 2025-06-05 13:55:39,330 | INFO     | --------------------------------------------------
[2025-06-05 09:56:12] 2025-06-05 13:55:39,330 | INFO     | PanDA job id: 6680720646
[2025-06-05 09:56:12] 2025-06-05 13:55:39,330 | INFO     | task id: 45006595
[2025-06-05 09:56:12] 2025-06-05 13:55:39,330 | INFO     | errors: (none)
[2025-06-05 09:56:12] 2025-06-05 13:55:39,330 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 09:56:12] 2025-06-05 13:55:39,331 | INFO     | pilot state: finished 
[2025-06-05 09:56:12] 2025-06-05 13:55:39,331 | INFO     | transexitcode: 0
[2025-06-05 09:56:12] 2025-06-05 13:55:39,331 | INFO     | exeerrorcode: 0
[2025-06-05 09:56:12] 2025-06-05 13:55:39,331 | INFO     | exeerrordiag: 
[2025-06-05 09:56:12] 2025-06-05 13:55:39,331 | INFO     | exitcode: 0
[2025-06-05 09:56:12] 2025-06-05 13:55:39,331 | INFO     | exitmsg: OK
[2025-06-05 09:56:12] 2025-06-05 13:55:39,331 | INFO     | cpuconsumptiontime: 25695 s
[2025-06-05 09:56:12] 2025-06-05 13:55:39,331 | INFO     | nevents: 400
[2025-06-05 09:56:12] 2025-06-05 13:55:39,331 | INFO     | neventsw: 0
[2025-06-05 09:56:12] 2025-06-05 13:55:39,331 | INFO     | pid: 1825087
[2025-06-05 09:56:12] 2025-06-05 13:55:39,331 | INFO     | pgrp: 1825087
[2025-06-05 09:56:12] 2025-06-05 13:55:39,331 | INFO     | corecount: 8
[2025-06-05 09:56:12] 2025-06-05 13:55:39,331 | INFO     | event service: False
[2025-06-05 09:56:12] 2025-06-05 13:55:39,331 | INFO     | sizes: {0: 2397632, 5: 2397894, 11: 2397950, 4185: 2423792, 4186: 2432789, 4191: 2432927}
[2025-06-05 09:56:12] 2025-06-05 13:55:39,331 | INFO     | --------------------------------------------------
[2025-06-05 09:56:12] 2025-06-05 13:55:39,331 | INFO     | 
[2025-06-05 09:56:12] 2025-06-05 13:55:39,331 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-05 09:56:12] 2025-06-05 13:55:39,350 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 09:56:12] 2025-06-05 13:55:39,350 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 09:56:12] 2025-06-05 13:55:39,350 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 09:56:12] 2025-06-05 13:55:39,350 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 09:56:12] 2025-06-05 13:55:39,350 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 09:56:12] 2025-06-05 13:55:39,350 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 09:56:12] 2025-06-05 13:55:39,350 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 09:56:12] 2025-06-05 13:55:39,351 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 09:56:12] 2025-06-05 13:55:39,351 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 09:56:12] 2025-06-05 13:55:39,351 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 09:56:12] 2025-06-05 13:55:39,351 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 09:56:12] 2025-06-05 13:55:39,351 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 09:56:12] 2025-06-05 13:55:39,351 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 09:56:12] 2025-06-05 13:55:39,351 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 09:56:12] 2025-06-05 13:55:39,351 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 09:56:12] 2025-06-05 13:55:39,351 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 09:56:12] 2025-06-05 13:55:39,351 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 09:56:12] 2025-06-05 13:55:39,351 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 09:56:12] 2025-06-05 13:55:39,351 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 09:56:12] 2025-06-05 13:55:39,351 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 09:56:12] 2025-06-05 13:55:39,352 | INFO     | job 6680720646 has completed (purged errors)
[2025-06-05 09:56:12] 2025-06-05 13:55:39,352 | INFO     | overall cleanup function is called
[2025-06-05 09:56:12] 2025-06-05 13:55:40,360 | INFO     | --- collectZombieJob: --- 10, [1825087]
[2025-06-05 09:56:12] 2025-06-05 13:55:40,360 | INFO     | zombie collector waiting for pid 1825087
[2025-06-05 09:56:12] 2025-06-05 13:55:40,360 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 09:56:12] 2025-06-05 13:55:40,360 | INFO     | collected zombie processes
[2025-06-05 09:56:12] 2025-06-05 13:55:40,360 | INFO     | will attempt to kill all subprocesses of pid=1825087
[2025-06-05 09:56:12] 2025-06-05 13:55:40,765 | INFO     | process IDs to be killed: [1825087] (in reverse order)
[2025-06-05 09:56:12] 2025-06-05 13:55:40,875 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 09:56:12] 2025-06-05 13:55:40,876 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 09:56:12] 2025-06-05 13:55:40,895 | INFO     | did not find any defunct processes belonging to 1825087
[2025-06-05 09:56:12] 2025-06-05 13:55:40,915 | INFO     | did not find any defunct processes belonging to 1825087
[2025-06-05 09:56:12] 2025-06-05 13:55:40,915 | INFO     | ready for new job
[2025-06-05 09:56:12] 2025-06-05 13:55:40,915 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 09:56:12] 2025-06-05 13:55:40,917 | INFO     | ***************************************
[2025-06-05 09:56:12] 2025-06-05 13:55:40,917 | INFO     | ***  PanDA Pilot version 3.10.3.82  ***
[2025-06-05 09:56:12] 2025-06-05 13:55:40,917 | INFO     | ***************************************
[2025-06-05 09:56:12] 2025-06-05 13:55:40,917 | INFO     | 
[2025-06-05 09:56:12] 2025-06-05 13:55:40,935 | INFO     | architecture information:
[2025-06-05 09:56:12] 2025-06-05 13:55:40,935 | INFO     | executing command: cat /etc/os-release
[2025-06-05 09:56:12] 2025-06-05 13:55:40,953 | INFO     | cat /etc/os-release:
[2025-06-05 09:56:12] NAME="CentOS Linux"
[2025-06-05 09:56:12] VERSION="7 (Core)"
[2025-06-05 09:56:12] ID="centos"
[2025-06-05 09:56:12] ID_LIKE="rhel fedora"
[2025-06-05 09:56:12] VERSION_ID="7"
[2025-06-05 09:56:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 09:56:12] ANSI_COLOR="0;31"
[2025-06-05 09:56:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 09:56:12] HOME_URL="https://www.centos.org/"
[2025-06-05 09:56:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 09:56:12] 
[2025-06-05 09:56:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 09:56:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 09:56:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 09:56:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 09:56:12] 
[2025-06-05 09:56:12] 2025-06-05 13:55:40,953 | INFO     | ***************************************
[2025-06-05 09:56:12] 2025-06-05 13:55:41,456 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-05 09:56:12] 2025-06-05 13:55:41,478 | INFO     | sufficient remaining disk space (76653002752 B)
[2025-06-05 09:56:12] 2025-06-05 13:55:41,478 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 09:56:12] 2025-06-05 13:55:41,479 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 09:56:12] 2025-06-05 13:55:41,479 | INFO     | update_server=False
[2025-06-05 09:56:12] 2025-06-05 13:55:41,479 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 09:56:12] 2025-06-05 13:55:41,479 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 09:56:12] 2025-06-05 13:55:41,479 | INFO     | aborting loop
[2025-06-05 09:56:12] 2025-06-05 13:55:41,536 | INFO     | all data control threads have been joined
[2025-06-05 09:56:12] 2025-06-05 13:55:42,149 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 09:56:12] 2025-06-05 13:55:42,429 | INFO     | all job control threads have been joined
[2025-06-05 09:56:12] 2025-06-05 13:55:42,483 | INFO     | [job] retrieve thread has finished
[2025-06-05 09:56:12] 2025-06-05 13:55:42,484 | INFO     | [job] job monitor thread has finished
[2025-06-05 09:56:12] 2025-06-05 13:55:42,497 | INFO     | [payload] validate_post thread has finished
[2025-06-05 09:56:12] 2025-06-05 13:55:42,541 | INFO     | [data] control thread has finished
[2025-06-05 09:56:12] 2025-06-05 13:55:42,697 | INFO     | [job] validate thread has finished
[2025-06-05 09:56:12] 2025-06-05 13:55:42,898 | INFO     | all payload control threads have been joined
[2025-06-05 09:56:12] 2025-06-05 13:55:43,005 | INFO     | [payload] failed_post thread has finished
[2025-06-05 09:56:12] 2025-06-05 13:55:43,047 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 09:56:12] 2025-06-05 13:55:43,082 | INFO     | [data] copytool_in thread has finished
[2025-06-05 09:56:12] 2025-06-05 13:55:43,166 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 09:56:12] 2025-06-05 13:55:43,419 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 09:56:12] 2025-06-05 13:55:43,434 | INFO     | [job] control thread has finished
[2025-06-05 09:56:12] 2025-06-05 13:55:43,903 | INFO     | [payload] control thread has finished
[2025-06-05 09:56:12] 2025-06-05 13:55:44,156 | INFO     | [data] copytool_out thread has finished
[2025-06-05 09:56:12] 2025-06-05 13:55:44,339 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 09:56:12] 2025-06-05 13:55:44,689 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 09:56:12] 2025-06-05 13:55:45,344 | INFO     | [job] queue monitor thread has finished
[2025-06-05 09:56:12] 2025-06-05 13:55:48,694 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 09:56:12] 2025-06-05 13:55:51,604 | INFO     | job.realtimelogging is not enabled
[2025-06-05 09:56:12] 2025-06-05 13:55:52,609 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 09:56:12] 2025-06-05 13:55:53,331 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139844237293376)>', '<ExcThread(monitor, started 139843883472640)>']
[2025-06-05 09:56:12] 2025-06-05 13:55:58,356 | INFO     | all workflow threads have been joined
[2025-06-05 09:56:12] 2025-06-05 13:55:58,357 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 09:56:12] 2025-06-05 13:55:58,357 | INFO     | traces error code: 0
[2025-06-05 09:56:12] 2025-06-05 13:55:58,357 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 09:56:12] 2025-06-05 13:56:12,349 | INFO     | PID=1817931 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-05 09:56:12] 2025-06-05 13:56:12,351 | INFO     | .. there are 31 such processes running
[2025-06-05 09:56:12] 2025-06-05 13:56:12,352 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 09:56:12] 2025-06-05 13:56:12,352 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 09:56:12] 2025-06-05 13:56:12,352 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 09:56:12] 2025-06-05 13:56:12,352 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 09:56:12] 2025-06-05 13:56:12,352 | CRITICAL | thread 'MainThread' is not alive
[2025-06-05 09:56:12] 2025-06-05 13:56:12,352 | INFO     | [monitor] control thread has ended
[2025-06-05 09:56:12] 2025-06-05 13:56:12,490 [wrapper] ==== pilot stdout END ====
[2025-06-05 09:56:12] 2025-06-05 13:56:12,492 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 09:56:12] 2025-06-05 13:56:12,493 [wrapper] pilotpid: 1817931
[2025-06-05 09:56:12] 2025-06-05 13:56:12,495 [wrapper] Pilot exit status: 0
[2025-06-05 09:56:12] 2025-06-05 13:56:12,503 [wrapper] pandaids: 6680720646
[2025-06-05 09:56:12] 2025-06-05 13:56:12,586 [wrapper] cleanup supervisor_pilot 2103727 1817932
[2025-06-05 09:56:12] 2025-06-05 13:56:12,589 [wrapper] Test setup, not cleaning
[2025-06-05 09:56:12] 2025-06-05 13:56:12,592 [wrapper] apfmon messages muted
[2025-06-05 09:56:12] 2025-06-05 13:56:12,595 [wrapper] ==== wrapper stdout END ====
[2025-06-05 09:56:12] 2025-06-05 13:56:12,597 [wrapper] ==== wrapper stderr END ====
[2025-06-05 09:56:12]  *** Error codes and diagnostics ***
[2025-06-05 09:56:12]     "exeErrorCode": 0,
[2025-06-05 09:56:12]     "exeErrorDiag": "",
[2025-06-05 09:56:12]     "pilotErrorCode": 0,
[2025-06-05 09:56:12]     "pilotErrorDiag": "",
[2025-06-05 09:56:12]  *** Listing of results directory ***
[2025-06-05 09:56:12] total 387356
[2025-06-05 09:56:12] -rw-r--r--. 1 boincer umatlas      5112 Jun  5 08:41 queuedata.json
[2025-06-05 09:56:12] -rw-r--r--. 1 boincer umatlas    529402 Jun  5 08:41 pilot3.tar.gz
[2025-06-05 09:56:12] -rwx------. 1 boincer umatlas     37140 Jun  5 08:44 runpilot2-wrapper.sh
[2025-06-05 09:56:12] -rw-r--r--. 1 boincer umatlas       100 Jun  5 08:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 09:56:12] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  5 08:45 run_atlas
[2025-06-05 09:56:12] -rw-r--r--. 1 boincer umatlas       105 Jun  5 08:45 job.xml
[2025-06-05 09:56:12] -rw-r--r--. 2 boincer umatlas 212990327 Jun  5 08:45 EVNT.45006593._001219.pool.root.1
[2025-06-05 09:56:12] -rw-r--r--. 2 boincer umatlas     15095 Jun  5 08:45 start_atlas.sh
[2025-06-05 09:56:12] drwxrwx--x. 2 boincer umatlas      4096 Jun  5 08:45 shared
[2025-06-05 09:56:12] -rw-r--r--. 2 boincer umatlas    541923 Jun  5 08:45 input.tar.gz
[2025-06-05 09:56:12] -rw-r--r--. 1 boincer umatlas         0 Jun  5 08:45 boinc_lockfile
[2025-06-05 09:56:12] -rw-r--r--. 1 boincer umatlas      2524 Jun  5 08:45 pandaJob.out
[2025-06-05 09:56:12] -rw-------. 1 boincer umatlas    983210 Jun  5 08:45 agis_schedconf.cvmfs.json
[2025-06-05 09:56:12] -rw-------. 1 boincer umatlas   1598969 Jun  5 08:45 agis_ddmendpoints.agis.ALL.json
[2025-06-05 09:56:12] drwx------. 4 boincer umatlas      4096 Jun  5 08:45 pilot3
[2025-06-05 09:56:12] -rw-r--r--. 1 boincer umatlas      6932 Jun  5 09:47 init_data.xml
[2025-06-05 09:56:12] -rw-------. 1 boincer umatlas 178350708 Jun  5 09:55 HITS.45006595._057091.pool.root.1
[2025-06-05 09:56:12] -rw-r--r--. 1 boincer umatlas       529 Jun  5 09:55 boinc_task_state.xml
[2025-06-05 09:56:12] -rw-------. 1 boincer umatlas      1041 Jun  5 09:55 memory_monitor_summary.json
[2025-06-05 09:56:12] -rw-------. 1 boincer umatlas    296666 Jun  5 09:55 log.45006595._057091.job.log.tgz.1
[2025-06-05 09:56:12] -rw-------. 1 boincer umatlas      7715 Jun  5 09:55 heartbeat.json
[2025-06-05 09:56:12] -rw-r--r--. 1 boincer umatlas        27 Jun  5 09:56 wrapper_checkpoint.txt
[2025-06-05 09:56:12] -rw-r--r--. 1 boincer umatlas      8192 Jun  5 09:56 boinc_mmap_file
[2025-06-05 09:56:12] -rw-------. 1 boincer umatlas        95 Jun  5 09:56 pilot_heartbeat.json
[2025-06-05 09:56:12] -rw-------. 1 boincer umatlas       893 Jun  5 09:56 pilotlog.txt
[2025-06-05 09:56:12] -rw-------. 1 boincer umatlas    415054 Jun  5 09:56 log.45006595._057091.job.log.1
[2025-06-05 09:56:12] -rw-------. 1 boincer umatlas       357 Jun  5 09:56 output.list
[2025-06-05 09:56:12] -rw-r--r--. 1 boincer umatlas       620 Jun  5 09:56 runtime_log
[2025-06-05 09:56:12] -rw-------. 1 boincer umatlas    727040 Jun  5 09:56 result.tar.gz
[2025-06-05 09:56:12] -rw-r--r--. 1 boincer umatlas      8655 Jun  5 09:56 runtime_log.err
[2025-06-05 09:56:12] -rw-------. 1 boincer umatlas       655 Jun  5 09:56 qEQNDmq8Oh7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmd5nKDme1HVnm.diag
[2025-06-05 09:56:12] -rw-r--r--. 1 boincer umatlas     21508 Jun  5 09:56 stderr.txt
[2025-06-05 09:56:12] HITS file was successfully produced:
[2025-06-05 09:56:12] -rw-------. 1 boincer umatlas 178350708 Jun  5 09:55 shared/HITS.pool.root.1
[2025-06-05 09:56:12]  *** Contents of shared directory: ***
[2025-06-05 09:56:12] total 383436
[2025-06-05 09:56:12] -rw-r--r--. 2 boincer umatlas 212990327 Jun  5 08:45 ATLAS.root_0
[2025-06-05 09:56:12] -rw-r--r--. 2 boincer umatlas     15095 Jun  5 08:45 start_atlas.sh
[2025-06-05 09:56:12] -rw-r--r--. 2 boincer umatlas    541923 Jun  5 08:45 input.tar.gz
[2025-06-05 09:56:12] -rw-------. 1 boincer umatlas 178350708 Jun  5 09:55 HITS.pool.root.1
[2025-06-05 09:56:12] -rw-------. 1 boincer umatlas    727040 Jun  5 09:56 result.tar.gz
09:56:14 (1814370): run_atlas exited; CPU time 25793.086797
09:56:14 (1814370): called boinc_finish(0)

</stderr_txt>
]]>

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