Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:48:50 (28729): wrapper (7.7.26015): starting
18:48:50 (28729): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 18:48:50] Arguments: --nthreads 8
[2025-06-05 18:48:50] Threads: 8
[2025-06-05 18:48:50] Checking for CVMFS
[2025-06-05 18:48:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 18:48:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 18:48:52] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 18:48:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 18:48:53] 2.11.2.0 16729 35021 87536 146826 1 16 20557768 25165825 4291 130560 0 18124810 99.824 20839222 2731 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 18:48:53] CVMFS is ok
[2025-06-05 18:48:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 18:48:53] Checking for apptainer binary...
[2025-06-05 18:48:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 18:48:53] Running /usr/bin/apptainer --version
[2025-06-05 18:48:53] apptainer version 1.3.2-1.el7
[2025-06-05 18:48:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 19:12:55] cg-vwn332.simple-grid.lan
[2025-06-05 19:12:55] apptainer works
[2025-06-05 19:12:55] Set ATHENA_PROC_NUMBER=8
[2025-06-05 19:12:55] Set ATHENA_CORE_NUMBER=8
[2025-06-05 19:12:55] Starting ATLAS job with PandaID=6668210953
[2025-06-05 19:12:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/20 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 02:31:15]  *** The last 200 lines of the pilot log: ***
[2025-06-06 02:31:15] 2025-06-05 22:41:53,841 | INFO     | extracted standard info from prmon json
[2025-06-06 02:31:15] 2025-06-05 22:41:53,841 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 02:31:15] 2025-06-05 22:41:53,841 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 02:31:15] 2025-06-05 22:41:53,842 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 02:31:15] 2025-06-05 22:41:53,842 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 02:31:15] 2025-06-05 22:41:53,849 | INFO     | fitting pss+swap vs Time
[2025-06-06 02:31:15] 2025-06-05 22:41:53,849 | INFO     | sum of square deviations: 9327281860.0
[2025-06-06 02:31:15] 2025-06-05 22:41:53,858 | INFO     | sum of deviations: 87786129923.99994
[2025-06-06 02:31:15] 2025-06-05 22:41:53,858 | INFO     | mean x: 1749153707.0
[2025-06-06 02:31:15] 2025-06-05 22:41:53,858 | INFO     | mean y: 2466050.0578778135
[2025-06-06 02:31:15] 2025-06-05 22:41:53,858 | INFO     | -- intersect: -16460147269.075605
[2025-06-06 02:31:15] 2025-06-05 22:41:53,858 | INFO     | intersect: -16460147269.075605
[2025-06-06 02:31:15] 2025-06-05 22:41:53,859 | INFO     | chi2: 7.357563162733904
[2025-06-06 02:31:15] 2025-06-05 22:41:53,860 | INFO     | sum of square deviations: 8884603792.5
[2025-06-06 02:31:15] 2025-06-05 22:41:53,863 | INFO     | sum of deviations: 107062306488.49998
[2025-06-06 02:31:15] 2025-06-05 22:41:53,863 | INFO     | mean x: 1749153554.5
[2025-06-06 02:31:15] 2025-06-05 22:41:53,863 | INFO     | mean y: 2472597.604575163
[2025-06-06 02:31:15] 2025-06-05 22:41:53,863 | INFO     | -- intersect: -21075385044.782593
[2025-06-06 02:31:15] 2025-06-05 22:41:53,864 | INFO     | intersect: -21075385044.782593
[2025-06-06 02:31:15] 2025-06-05 22:41:53,864 | INFO     | chi2: 6.634045900115928
[2025-06-06 02:31:15] 2025-06-05 22:41:53,864 | INFO     | current chi2=6.634045900115928 (change=9.833653434096156 %)
[2025-06-06 02:31:15] 2025-06-05 22:41:53,864 | INFO     | right removable region: 305
[2025-06-06 02:31:15] 2025-06-05 22:41:53,865 | INFO     | sum of square deviations: 8884603792.5
[2025-06-06 02:31:15] 2025-06-05 22:41:53,868 | INFO     | sum of deviations: -24119711923.49999
[2025-06-06 02:31:15] 2025-06-05 22:41:53,868 | INFO     | mean x: 1749153859.5
[2025-06-06 02:31:15] 2025-06-05 22:41:53,869 | INFO     | mean y: 2504586.022875817
[2025-06-06 02:31:15] 2025-06-05 22:41:53,869 | INFO     | -- intersect: 4751066051.040864
[2025-06-06 02:31:15] 2025-06-05 22:41:53,869 | INFO     | intersect: 4751066051.040864
[2025-06-06 02:31:15] 2025-06-05 22:41:53,869 | INFO     | chi2: 2.343570423273352
[2025-06-06 02:31:15] 2025-06-05 22:41:53,869 | INFO     | current chi2=2.343570423273352 (change=68.14746443301298 %)
[2025-06-06 02:31:15] 2025-06-05 22:41:53,870 | INFO     | sum of square deviations: 8456158550.0
[2025-06-06 02:31:15] 2025-06-05 22:41:53,873 | INFO     | sum of deviations: -75893750972.0
[2025-06-06 02:31:15] 2025-06-05 22:41:53,873 | INFO     | mean x: 1749154012.0
[2025-06-06 02:31:15] 2025-06-05 22:41:53,873 | INFO     | mean y: 2522923.295681063
[2025-06-06 02:31:15] 2025-06-05 22:41:53,873 | INFO     | -- intersect: 15701123914.924759
[2025-06-06 02:31:15] 2025-06-05 22:41:53,873 | INFO     | intersect: 15701123914.924759
[2025-06-06 02:31:15] 2025-06-05 22:41:53,874 | INFO     | chi2: 1.0048962633203253
[2025-06-06 02:31:15] 2025-06-05 22:41:53,874 | INFO     | current chi2=1.0048962633203253 (change=57.12114074571954 %)
[2025-06-06 02:31:15] 2025-06-05 22:41:53,874 | INFO     | sum of square deviations: 8041713570.0
[2025-06-06 02:31:15] 2025-06-05 22:41:53,887 | INFO     | sum of deviations: -73661506937.5
[2025-06-06 02:31:15] 2025-06-05 22:41:53,887 | INFO     | mean x: 1749154164.5
[2025-06-06 02:31:15] 2025-06-05 22:41:53,887 | INFO     | mean y: 2522082.929054054
[2025-06-06 02:31:15] 2025-06-05 22:41:53,887 | INFO     | -- intersect: 16024646037.174015
[2025-06-06 02:31:15] 2025-06-05 22:41:53,887 | INFO     | intersect: 16024646037.174015
[2025-06-06 02:31:15] 2025-06-05 22:41:53,888 | INFO     | chi2: 0.992250415642804
[2025-06-06 02:31:15] 2025-06-05 22:41:53,888 | INFO     | current chi2=0.992250415642804 (change=1.2584231964140817 %)
[2025-06-06 02:31:15] 2025-06-05 22:41:53,888 | INFO     | left removable region: 30
[2025-06-06 02:31:15] 2025-06-05 22:41:53,889 | INFO     | sum of square deviations: 6448679050.0
[2025-06-06 02:31:15] 2025-06-05 22:41:53,891 | INFO     | sum of deviations: -25338119000.0
[2025-06-06 02:31:15] 2025-06-05 22:41:53,891 | INFO     | mean x: 1749154439.0
[2025-06-06 02:31:15] 2025-06-05 22:41:53,891 | INFO     | mean y: 2518774.541818182
[2025-06-06 02:31:15] 2025-06-05 22:41:53,892 | INFO     | -- intersect: 6875288062.813382
[2025-06-06 02:31:15] 2025-06-05 22:41:53,892 | INFO     | intersect: 6875288062.813382
[2025-06-06 02:31:15] 2025-06-05 22:41:53,892 | INFO     | chi2: 0.14176573433191322
[2025-06-06 02:31:15] 2025-06-05 22:41:53,892 | INFO     | -- intersect: 6875288062.813382
[2025-06-06 02:31:15] 2025-06-05 22:41:53,893 | INFO     | current memory leak: -3.93 B/s (using 275 data points, chi2=0.14)
[2025-06-06 02:31:15] 2025-06-05 22:41:53,894 | INFO     | ..............................
[2025-06-06 02:31:15] 2025-06-05 22:41:53,894 | INFO     | . Timing measurements:
[2025-06-06 02:31:15] 2025-06-05 22:41:53,894 | INFO     | . get job = 0 s
[2025-06-06 02:31:15] 2025-06-05 22:41:53,894 | INFO     | . initial setup = 10 s
[2025-06-06 02:31:15] 2025-06-05 22:41:53,894 | INFO     | . payload setup = 170 s
[2025-06-06 02:31:15] 2025-06-05 22:41:53,894 | INFO     | . stage-in = 0 s
[2025-06-06 02:31:15] 2025-06-05 22:41:53,894 | INFO     | . payload execution = 19121 s
[2025-06-06 02:31:15] 2025-06-05 22:41:53,894 | INFO     | . stage-out = 3 s
[2025-06-06 02:31:15] 2025-06-05 22:41:53,894 | INFO     | . log creation = 1 s
[2025-06-06 02:31:15] 2025-06-05 22:41:53,895 | INFO     | ..............................
[2025-06-06 02:31:15] 2025-06-05 22:41:54,045 | INFO     | 
[2025-06-06 02:31:15] 2025-06-05 22:41:54,045 | INFO     | job summary report
[2025-06-06 02:31:15] 2025-06-05 22:41:54,045 | INFO     | --------------------------------------------------
[2025-06-06 02:31:15] 2025-06-05 22:41:54,045 | INFO     | PanDA job id: 6668210953
[2025-06-06 02:31:15] 2025-06-05 22:41:54,045 | INFO     | task id: 44871837
[2025-06-06 02:31:15] 2025-06-05 22:41:54,045 | INFO     | errors: (none)
[2025-06-06 02:31:15] 2025-06-05 22:41:54,045 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 02:31:15] 2025-06-05 22:41:54,045 | INFO     | pilot state: finished 
[2025-06-06 02:31:15] 2025-06-05 22:41:54,046 | INFO     | transexitcode: 0
[2025-06-06 02:31:15] 2025-06-05 22:41:54,046 | INFO     | exeerrorcode: 0
[2025-06-06 02:31:15] 2025-06-05 22:41:54,046 | INFO     | exeerrordiag: 
[2025-06-06 02:31:15] 2025-06-05 22:41:54,046 | INFO     | exitcode: 0
[2025-06-06 02:31:15] 2025-06-05 22:41:54,046 | INFO     | exitmsg: OK
[2025-06-06 02:31:15] 2025-06-05 22:41:54,046 | INFO     | cpuconsumptiontime: 71215 s
[2025-06-06 02:31:15] 2025-06-05 22:41:54,046 | INFO     | nevents: 400
[2025-06-06 02:31:15] 2025-06-05 22:41:54,046 | INFO     | neventsw: 0
[2025-06-06 02:31:15] 2025-06-05 22:41:54,046 | INFO     | pid: 23543
[2025-06-06 02:31:15] 2025-06-05 22:41:54,046 | INFO     | pgrp: 23543
[2025-06-06 02:31:15] 2025-06-05 22:41:54,046 | INFO     | corecount: 8
[2025-06-06 02:31:15] 2025-06-05 22:41:54,046 | INFO     | event service: False
[2025-06-06 02:31:15] 2025-06-05 22:41:54,046 | INFO     | sizes: {0: 2397222, 1: 2397421, 2: 2397421, 12: 2397449, 23: 2397477, 34: 2397505, 44: 2397661, 55: 2397689, 66: 2397717, 77: 2397745, 87: 2397801, 91: 2398315, 98
[2025-06-06 02:31:15] 2025-06-05 22:41:54,047 | INFO     | --------------------------------------------------
[2025-06-06 02:31:15] 2025-06-05 22:41:54,047 | INFO     | 
[2025-06-06 02:31:15] 2025-06-05 22:41:54,047 | INFO     | executing command: ls -lF /var/lib/boinc/slots/20
[2025-06-06 02:31:15] 2025-06-05 22:41:54,371 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 02:31:15] 2025-06-05 22:41:54,371 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 02:31:15] 2025-06-05 22:41:54,371 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 02:31:15] 2025-06-05 22:41:54,371 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 02:31:15] 2025-06-05 22:41:54,371 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 02:31:15] 2025-06-05 22:41:54,371 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 02:31:15] 2025-06-05 22:41:54,372 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 02:31:15] 2025-06-05 22:41:54,372 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 02:31:15] 2025-06-05 22:41:54,372 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 02:31:15] 2025-06-05 22:41:54,372 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 02:31:15] 2025-06-05 22:41:54,372 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 02:31:15] 2025-06-05 22:41:54,372 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 02:31:15] 2025-06-05 22:41:54,372 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 02:31:15] 2025-06-05 22:41:54,372 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 02:31:15] 2025-06-05 22:41:54,372 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 02:31:15] 2025-06-05 22:41:54,372 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 02:31:15] 2025-06-05 22:41:54,372 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 02:31:15] 2025-06-05 22:41:54,372 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 02:31:15] 2025-06-05 22:41:54,373 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 02:31:15] 2025-06-05 22:41:54,373 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 02:31:15] 2025-06-05 22:41:54,373 | INFO     | job 6668210953 has completed (purged errors)
[2025-06-06 02:31:15] 2025-06-05 22:41:54,373 | INFO     | overall cleanup function is called
[2025-06-06 02:31:15] 2025-06-05 22:41:55,382 | INFO     | --- collectZombieJob: --- 10, [23543]
[2025-06-06 02:31:15] 2025-06-05 22:41:55,382 | INFO     | zombie collector waiting for pid 23543
[2025-06-06 02:31:15] 2025-06-05 22:41:55,383 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 02:31:15] 2025-06-05 22:41:55,383 | INFO     | collected zombie processes
[2025-06-06 02:31:15] 2025-06-05 22:41:55,383 | INFO     | will attempt to kill all subprocesses of pid=23543
[2025-06-06 02:31:15] 2025-06-05 22:41:55,524 | INFO     | process IDs to be killed: [23543] (in reverse order)
[2025-06-06 02:31:15] 2025-06-05 22:41:56,486 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 02:31:15] 2025-06-05 22:41:56,486 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 02:31:15] 2025-06-05 22:41:56,490 | INFO     | did not find any defunct processes belonging to 23543
[2025-06-06 02:31:15] 2025-06-05 22:41:56,494 | INFO     | did not find any defunct processes belonging to 23543
[2025-06-06 02:31:15] 2025-06-05 22:41:56,494 | INFO     | ready for new job
[2025-06-06 02:31:15] 2025-06-05 22:41:56,494 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 02:31:15] 2025-06-05 22:41:56,496 | INFO     | **************************************
[2025-06-06 02:31:15] 2025-06-05 22:41:56,497 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 02:31:15] 2025-06-05 22:41:56,497 | INFO     | **************************************
[2025-06-06 02:31:15] 2025-06-05 22:41:56,497 | INFO     | 
[2025-06-06 02:31:15] 2025-06-05 22:41:56,497 | INFO     | pilot is running in a VM
[2025-06-06 02:31:15] 2025-06-05 22:41:56,498 | INFO     | architecture information:
[2025-06-06 02:31:15] 2025-06-05 22:41:56,509 | INFO     | executing command: cat /etc/os-release
[2025-06-06 02:31:15] 2025-06-05 22:41:56,849 | INFO     | cat /etc/os-release:
[2025-06-06 02:31:15] NAME="CentOS Linux"
[2025-06-06 02:31:15] VERSION="7 (Core)"
[2025-06-06 02:31:15] ID="centos"
[2025-06-06 02:31:15] ID_LIKE="rhel fedora"
[2025-06-06 02:31:15] VERSION_ID="7"
[2025-06-06 02:31:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 02:31:15] ANSI_COLOR="0;31"
[2025-06-06 02:31:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 02:31:15] HOME_URL="https://www.centos.org/"
[2025-06-06 02:31:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 02:31:15] 
[2025-06-06 02:31:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 02:31:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 02:31:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 02:31:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 02:31:15] 
[2025-06-06 02:31:15] 2025-06-05 22:41:56,849 | INFO     | **************************************
[2025-06-06 02:31:15] 2025-06-05 22:41:57,353 | INFO     | executing command: df -mP /var/lib/boinc/slots/20
[2025-06-06 02:31:15] 2025-06-05 22:41:57,443 | INFO     | sufficient remaining disk space (497004052480 B)
[2025-06-06 02:31:15] 2025-06-05 22:41:57,444 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 02:31:15] 2025-06-05 22:41:57,444 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 02:31:15] 2025-06-05 22:41:57,444 | INFO     | update_server=False
[2025-06-06 02:31:15] 2025-06-05 22:41:57,444 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 02:31:15] 2025-06-05 22:41:57,444 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 02:31:15] 2025-06-05 22:41:57,445 | INFO     | aborting loop
[2025-06-06 02:31:15] 2025-06-05 22:41:57,445 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-06 02:31:15] 2025-06-05 22:41:57,446 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 02:31:15] 2025-06-05 22:41:57,446 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 02:31:15] 2025-06-05 22:41:57,446 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 02:31:15] 2025-06-05 22:41:57,446 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 02:31:15] 2025-06-05 22:41:57,583 | INFO     | all data control threads have been joined
[2025-06-06 02:31:15] 2025-06-05 22:41:58,410 | INFO     | all job control threads have been joined
[2025-06-06 02:31:15] 2025-06-05 22:41:58,450 | INFO     | [job] retrieve thread has finished
[2025-06-06 02:31:15] 2025-06-05 22:41:58,451 | INFO     | [job] job monitor thread has finished
[2025-06-06 02:31:15] 2025-06-05 22:41:58,454 | INFO     | [data] copytool_in thread has finished
[2025-06-06 02:31:15] 2025-06-05 22:41:58,456 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 02:31:15] 2025-06-05 22:41:58,467 | INFO     | all payload control threads have been joined
[2025-06-06 02:31:15] 2025-06-05 22:41:58,589 | INFO     | [data] control thread has finished
[2025-06-06 02:31:15] 2025-06-05 22:41:58,694 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 02:31:15] 2025-06-05 22:41:59,058 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 02:31:15] 2025-06-05 22:41:59,249 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 02:31:15] 2025-06-05 22:41:59,323 | INFO     | [job] validate thread has finished
[2025-06-06 02:31:15] 2025-06-05 22:41:59,402 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 02:31:15] 2025-06-05 22:41:59,416 | INFO     | [job] control thread has finished
[2025-06-06 02:31:15] 2025-06-05 22:41:59,453 | INFO     | [data] copytool_out thread has finished
[2025-06-06 02:31:15] 2025-06-05 22:41:59,473 | INFO     | [payload] control thread has finished
[2025-06-06 02:31:15] 2025-06-05 22:41:59,506 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 02:31:15] 2025-06-05 22:41:59,921 | INFO     | [payload] failed_post thread has finished
[2025-06-06 02:31:15] 2025-06-05 22:41:59,939 | INFO     | [payload] validate_post thread has finished
[2025-06-06 02:31:15] 2025-06-05 22:42:00,064 | INFO     | [job] queue monitor thread has finished
[2025-06-06 02:31:15] 2025-06-05 22:42:03,258 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 02:31:15] 2025-06-05 22:42:04,308 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140229920167744)>', '<ExcThread(monitor, started 140229264533248)>']
[2025-06-06 02:31:15] 2025-06-05 22:42:04,488 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 02:31:15] 2025-06-05 22:42:04,488 | INFO     | [monitor] control thread has ended
[2025-06-06 02:31:15] 2025-06-05 22:42:09,334 | INFO     | all workflow threads have been joined
[2025-06-06 02:31:15] 2025-06-05 22:42:09,334 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 02:31:15] 2025-06-05 22:42:09,335 | INFO     | traces error code: 0
[2025-06-06 02:31:15] 2025-06-05 22:42:09,335 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 02:31:15] 2025-06-05 22:42:09,673 [wrapper] ==== pilot stdout END ====
[2025-06-06 02:31:15] 2025-06-05 22:42:09,702 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 02:31:15] 2025-06-05 22:42:09,793 [wrapper] pilotpid: 16926
[2025-06-06 02:31:15] 2025-06-05 22:42:09,847 [wrapper] Pilot exit status: 0
[2025-06-06 02:31:15] 2025-06-05 22:42:10,291 [wrapper] pandaids: 6668210953
[2025-06-06 02:31:15] 2025-06-05 22:42:10,964 [wrapper] cleanup supervisor_pilot  7659 16927
[2025-06-06 02:31:15] 2025-06-05 22:42:11,031 [wrapper] Test setup, not cleaning
[2025-06-06 02:31:15] 2025-06-05 22:42:11,140 [wrapper] apfmon messages muted
[2025-06-06 02:31:15] 2025-06-05 22:42:11,264 [wrapper] ==== wrapper stdout END ====
[2025-06-06 02:31:15] 2025-06-05 22:42:11,324 [wrapper] ==== wrapper stderr END ====
[2025-06-06 02:31:15]  *** Error codes and diagnostics ***
[2025-06-06 02:31:15]     "exeErrorCode": 0,
[2025-06-06 02:31:15]     "exeErrorDiag": "",
[2025-06-06 02:31:15]     "pilotErrorCode": 0,
[2025-06-06 02:31:15]     "pilotErrorDiag": "",
[2025-06-06 02:31:15]  *** Listing of results directory ***
[2025-06-06 02:31:15] total 414892
[2025-06-06 02:31:15] -rw-r--r--. 1 boinc boinc    495897 May 28 09:03 pilot3.tar.gz
[2025-06-06 02:31:15] -rwx------. 1 boinc boinc     37140 May 28 09:05 runpilot2-wrapper.sh
[2025-06-06 02:31:15] -rw-r--r--. 1 boinc boinc      5111 May 28 09:05 queuedata.json
[2025-06-06 02:31:15] -rw-r--r--. 1 boinc boinc       100 Jun  5 18:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 02:31:15] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 18:48 run_atlas
[2025-06-06 02:31:15] -rw-r--r--. 1 boinc boinc       105 Jun  5 18:48 job.xml
[2025-06-06 02:31:15] -rw-r--r--. 2 boinc boinc 221984073 Jun  5 18:48 EVNT.44871834._003143.pool.root.1
[2025-06-06 02:31:15] -rw-r--r--. 2 boinc boinc     15093 Jun  5 18:48 start_atlas.sh
[2025-06-06 02:31:15] drwxrwx--x. 2 boinc boinc        68 Jun  5 18:48 shared
[2025-06-06 02:31:15] -rw-r--r--. 2 boinc boinc    508874 Jun  5 18:48 input.tar.gz
[2025-06-06 02:31:15] -rw-r--r--. 1 boinc boinc      6391 Jun  5 18:48 init_data.xml
[2025-06-06 02:31:15] -rw-r--r--. 1 boinc boinc         0 Jun  5 18:48 boinc_lockfile
[2025-06-06 02:31:15] -rw-r--r--. 1 boinc boinc      2559 Jun  5 19:12 pandaJob.out
[2025-06-06 02:31:15] -rw-------. 1 boinc boinc    983229 Jun  5 19:15 agis_schedconf.cvmfs.json
[2025-06-06 02:31:15] drwx------. 4 boinc boinc      4096 Jun  5 19:15 pilot3
[2025-06-06 02:31:15] -rw-------. 1 boinc boinc 194891376 Jun  6 00:38 HITS.44871837._080490.pool.root.1
[2025-06-06 02:31:15] -rw-r--r--. 1 boinc boinc       531 Jun  6 00:39 boinc_task_state.xml
[2025-06-06 02:31:15] -rw-------. 1 boinc boinc      1017 Jun  6 00:40 memory_monitor_summary.json
[2025-06-06 02:31:15] -rw-------. 1 boinc boinc   1598969 Jun  6 00:40 agis_ddmendpoints.agis.ALL.json
[2025-06-06 02:31:15] -rw-------. 1 boinc boinc    422194 Jun  6 00:40 log.44871837._080490.job.log.tgz.1
[2025-06-06 02:31:15] -rw-------. 1 boinc boinc        95 Jun  6 00:41 pilot_heartbeat.json
[2025-06-06 02:31:15] -rw-------. 1 boinc boinc      7688 Jun  6 00:41 heartbeat.json
[2025-06-06 02:31:15] -rw-------. 1 boinc boinc      4540 Jun  6 00:42 pilotlog.txt
[2025-06-06 02:31:15] -rw-------. 1 boinc boinc   1654577 Jun  6 00:42 log.44871837._080490.job.log.1
[2025-06-06 02:31:15] -rw-------. 1 boinc boinc       357 Jun  6 00:42 output.list
[2025-06-06 02:31:15] -rw-r--r--. 1 boinc boinc       620 Jun  6 00:42 runtime_log
[2025-06-06 02:31:15] -rw-------. 1 boinc boinc   2099200 Jun  6 00:42 result.tar.gz
[2025-06-06 02:31:15] -rw-------. 1 boinc boinc       657 Jun  6 00:42 TjkLDml1Pe7n9Rq4apOajLDm4fhM0noT9bVof3QYDmq7SKDmmsctfm.diag
[2025-06-06 02:31:15] -rw-r--r--. 1 boinc boinc      8673 Jun  6 00:42 runtime_log.err
[2025-06-06 02:31:15] -rw-r--r--. 1 boinc boinc      8192 Jun  6 02:31 boinc_mmap_file
[2025-06-06 02:31:15] -rw-r--r--. 1 boinc boinc        28 Jun  6 02:31 wrapper_checkpoint.txt
[2025-06-06 02:31:15] -rw-r--r--. 1 boinc boinc     20508 Jun  6 02:31 stderr.txt
[2025-06-06 02:31:15] HITS file was successfully produced:
[2025-06-06 02:31:15] -rw-------. 1 boinc boinc 194891376 Jun  6 00:38 shared/HITS.pool.root.1
[2025-06-06 02:31:15]  *** Contents of shared directory: ***
[2025-06-06 02:31:15] total 409676
[2025-06-06 02:31:15] -rw-r--r--. 2 boinc boinc 221984073 Jun  5 18:48 ATLAS.root_0
[2025-06-06 02:31:15] -rw-r--r--. 2 boinc boinc     15093 Jun  5 18:48 start_atlas.sh
[2025-06-06 02:31:15] -rw-r--r--. 2 boinc boinc    508874 Jun  5 18:48 input.tar.gz
[2025-06-06 02:31:15] -rw-------. 1 boinc boinc 194891376 Jun  6 00:38 HITS.pool.root.1
[2025-06-06 02:31:15] -rw-------. 1 boinc boinc   2099200 Jun  6 00:42 result.tar.gz
02:31:17 (28729): run_atlas exited; CPU time 71483.748227
02:31:17 (28729): called boinc_finish(0)

</stderr_txt>
]]>

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