Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:25:21 (3306609): wrapper (7.7.26015): starting
10:25:21 (3306609): wrapper: running run_atlas (--nthreads 12)
[2025-06-05 10:25:21] Arguments: --nthreads 12
[2025-06-05 10:25:21] Threads: 12
[2025-06-05 10:25:21] Checking for CVMFS
[2025-06-05 10:25:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 10:25:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 10:25:22] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 10:25:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 10:25:22] 2.12.6.0 40552 2355 169100 146822 0 369 20532652 32935937 13848 16776704 0 4901068 99.154 11822970 40538 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-05 10:25:22] CVMFS is ok
[2025-06-05 10:25:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 10:25:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 10:25:22] Further information can be found at the LHC@home message board.
[2025-06-05 10:25:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 10:25:22] Checking for apptainer binary...
[2025-06-05 10:25:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 10:25:22] Running /usr/bin/apptainer --version
[2025-06-05 10:25:22] apptainer version 1.4.1-1.el9
[2025-06-05 10:25:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 10:25:22] c6-1-26-4.aglt2.org
[2025-06-05 10:25:22] apptainer works
[2025-06-05 10:25:22] Set ATHENA_PROC_NUMBER=12
[2025-06-05 10:25:22] Set ATHENA_CORE_NUMBER=12
[2025-06-05 10:25:22] Starting ATLAS job with PandaID=6677735578
[2025-06-05 10:25:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 11:44:51]  *** The last 200 lines of the pilot log: ***
[2025-06-05 11:44:51]  storage_token=
[2025-06-05 11:44:51]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6677735578/log.45006595._038175.job.log.tgz.1
[2025-06-05 11:44:51]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b5/9a/log.45006595._038175.job.log.tgz.1
[2025-06-05 11:44:51]  workdir=None
[2025-06-05 11:44:51] ]
[2025-06-05 11:44:51] 2025-06-05 15:44:31,698 | INFO     | transferring file log.45006595._038175.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6677735578/log.45006595._038175.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-05 11:44:51] 2025-06-05 15:44:31,699 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6677735578/log.45006595._038175.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._038175.job
[2025-06-05 11:44:51] 2025-06-05 15:44:31,714 | INFO     | adding to output.list: log.45006595._038175.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b5/9a/log.45006595._038175.job.log.tg
[2025-06-05 11:44:51] 2025-06-05 15:44:31,716 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-05 11:44:51] 2025-06-05 15:44:31,716 | INFO     | summary of transferred files:
[2025-06-05 11:44:51] 2025-06-05 15:44:31,716 | INFO     |  -- lfn=log.45006595._038175.job.log.tgz.1, status_code=0, status=transferred
[2025-06-05 11:44:51] 2025-06-05 15:44:31,716 | INFO     | stage-out finished correctly
[2025-06-05 11:44:51] 2025-06-05 15:44:33,935 | INFO     | PID=3310670 has CPU usage=8.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-05 11:44:51] 2025-06-05 15:44:33,935 | INFO     | .. there are 14 such processes running
[2025-06-05 11:44:51] 2025-06-05 15:44:33,976 | WARNING  | process 3317082 can no longer be monitored (due to stat problems) - aborting
[2025-06-05 11:44:51] 2025-06-05 15:44:33,976 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677735578/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 11:44:51] 2025-06-05 15:44:33,977 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677735578/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 11:44:51] 2025-06-05 15:44:33,978 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4358716 B
[2025-06-05 11:44:51] 2025-06-05 15:44:33,978 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15791 B
[2025-06-05 11:44:51] 2025-06-05 15:44:33,978 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 11:44:51] 2025-06-05 15:44:33,989 | INFO     | sufficient remaining disk space (75902222336 B)
[2025-06-05 11:44:51] 2025-06-05 15:44:33,989 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-05 11:44:51] 2025-06-05 15:44:33,990 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6677735578: 4657979 B (within 2537553920 B limit)
[2025-06-05 11:44:51] 2025-06-05 15:44:33,990 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6677735578/HITS.45006595._038175.pool.root.1 does not exist (skip from workdir size calculation)
[2025-06-05 11:44:51] 2025-06-05 15:44:33,990 | INFO     | total size of present files: 0 B (workdir size: 4657979 B)
[2025-06-05 11:44:51] 2025-06-05 15:44:33,990 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6677735578/HITS.45006595._038175.pool.root.1 since it does not exist
[2025-06-05 11:44:51] 2025-06-05 15:44:34,157 | INFO     | number of running child processes to parent process 3317082: 1
[2025-06-05 11:44:51] 2025-06-05 15:44:34,157 | INFO     | maximum number of monitored processes: 6
[2025-06-05 11:44:51] 2025-06-05 15:44:34,731 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-05 11:44:51] 2025-06-05 15:44:34,825 | INFO     | job 6677735578 has state=finished
[2025-06-05 11:44:51] 2025-06-05 15:44:34,825 | INFO     | preparing for final server update for job 6677735578 in state='finished'
[2025-06-05 11:44:51] 2025-06-05 15:44:34,826 | INFO     | this job has now completed (state=finished)
[2025-06-05 11:44:51] 2025-06-05 15:44:34,826 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-05 11:44:51] 2025-06-05 15:44:34,826 | INFO     | log transfer has been attempted: DONE
[2025-06-05 11:44:51] 2025-06-05 15:44:34,826 | INFO     | job 6677735578 has finished - writing final server update
[2025-06-05 11:44:51] 2025-06-05 15:44:34,827 | INFO     | total number of processed events: 400 (read)
[2025-06-05 11:44:51] 2025-06-05 15:44:34,842 | INFO     | executing command: lscpu
[2025-06-05 11:44:51] 2025-06-05 15:44:34,901 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 11:44:51] 2025-06-05 15:44:36,659 | INFO     | monitor loop #315: job 0:6677735578 is in state 'finished'
[2025-06-05 11:44:51] 2025-06-05 15:44:36,660 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 11:44:51] 2025-06-05 15:44:38,285 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-05 11:44:51] 2025-06-05 15:44:38,285 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677735578/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 11:44:51] 2025-06-05 15:44:38,286 | INFO     | extracted standard info from prmon json
[2025-06-05 11:44:51] 2025-06-05 15:44:38,286 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 11:44:51] 2025-06-05 15:44:38,286 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 11:44:51] 2025-06-05 15:44:38,287 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 11:44:51] 2025-06-05 15:44:38,287 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 11:44:51] 2025-06-05 15:44:38,289 | INFO     | fitting pss+swap vs Time
[2025-06-05 11:44:51] 2025-06-05 15:44:38,289 | INFO     | sum of square deviations: 106339818.70000014
[2025-06-05 11:44:51] 2025-06-05 15:44:38,290 | INFO     | sum of deviations: -12946006923.100002
[2025-06-05 11:44:51] 2025-06-05 15:44:38,290 | INFO     | mean x: 1749135991.7
[2025-06-05 11:44:51] 2025-06-05 15:44:38,290 | INFO     | mean y: 2604051.6142857145
[2025-06-05 11:44:51] 2025-06-05 15:44:38,290 | INFO     | -- intersect: 212945666535.8045
[2025-06-05 11:44:51] 2025-06-05 15:44:38,290 | INFO     | intersect: 212945666535.8045
[2025-06-05 11:44:51] 2025-06-05 15:44:38,290 | INFO     | chi2: 0.16187728425809397
[2025-06-05 11:44:51] 2025-06-05 15:44:38,290 | INFO     | -- intersect: 212945666535.8045
[2025-06-05 11:44:51] 2025-06-05 15:44:38,290 | INFO     | current memory leak: -121.74 B/s (using 70 data points, chi2=0.16)
[2025-06-05 11:44:51] 2025-06-05 15:44:38,291 | INFO     | ..............................
[2025-06-05 11:44:51] 2025-06-05 15:44:38,291 | INFO     | . Timing measurements:
[2025-06-05 11:44:51] 2025-06-05 15:44:38,291 | INFO     | . get job = 0 s
[2025-06-05 11:44:51] 2025-06-05 15:44:38,291 | INFO     | . initial setup = 3 s
[2025-06-05 11:44:51] 2025-06-05 15:44:38,291 | INFO     | . payload setup = 12 s
[2025-06-05 11:44:51] 2025-06-05 15:44:38,291 | INFO     | . stage-in = 0 s
[2025-06-05 11:44:51] 2025-06-05 15:44:38,291 | INFO     | . payload execution = 4695 s
[2025-06-05 11:44:51] 2025-06-05 15:44:38,291 | INFO     | . stage-out = 0 s
[2025-06-05 11:44:51] 2025-06-05 15:44:38,291 | INFO     | . log creation = 0 s
[2025-06-05 11:44:51] 2025-06-05 15:44:38,291 | INFO     | ..............................
[2025-06-05 11:44:51] 2025-06-05 15:44:38,770 | INFO     | 
[2025-06-05 11:44:51] 2025-06-05 15:44:38,770 | INFO     | job summary report
[2025-06-05 11:44:51] 2025-06-05 15:44:38,770 | INFO     | --------------------------------------------------
[2025-06-05 11:44:51] 2025-06-05 15:44:38,770 | INFO     | PanDA job id: 6677735578
[2025-06-05 11:44:51] 2025-06-05 15:44:38,770 | INFO     | task id: 45006595
[2025-06-05 11:44:51] 2025-06-05 15:44:38,771 | INFO     | errors: (none)
[2025-06-05 11:44:51] 2025-06-05 15:44:38,771 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 11:44:51] 2025-06-05 15:44:38,771 | INFO     | pilot state: finished 
[2025-06-05 11:44:51] 2025-06-05 15:44:38,771 | INFO     | transexitcode: 0
[2025-06-05 11:44:51] 2025-06-05 15:44:38,771 | INFO     | exeerrorcode: 0
[2025-06-05 11:44:51] 2025-06-05 15:44:38,771 | INFO     | exeerrordiag: 
[2025-06-05 11:44:51] 2025-06-05 15:44:38,771 | INFO     | exitcode: 0
[2025-06-05 11:44:51] 2025-06-05 15:44:38,771 | INFO     | exitmsg: OK
[2025-06-05 11:44:51] 2025-06-05 15:44:38,771 | INFO     | cpuconsumptiontime: 31497 s
[2025-06-05 11:44:51] 2025-06-05 15:44:38,771 | INFO     | nevents: 400
[2025-06-05 11:44:51] 2025-06-05 15:44:38,771 | INFO     | neventsw: 0
[2025-06-05 11:44:51] 2025-06-05 15:44:38,771 | INFO     | pid: 3317082
[2025-06-05 11:44:51] 2025-06-05 15:44:38,771 | INFO     | pgrp: 3317082
[2025-06-05 11:44:51] 2025-06-05 15:44:38,771 | INFO     | corecount: 12
[2025-06-05 11:44:51] 2025-06-05 15:44:38,771 | INFO     | event service: False
[2025-06-05 11:44:51] 2025-06-05 15:44:38,772 | INFO     | sizes: {0: 2397171, 1: 2397370, 8: 2397576, 12: 2397604, 4711: 2423749, 4712: 2423748, 4713: 2432873, 4716: 2432957, 4719: 2433127}
[2025-06-05 11:44:51] 2025-06-05 15:44:38,772 | INFO     | --------------------------------------------------
[2025-06-05 11:44:51] 2025-06-05 15:44:38,772 | INFO     | 
[2025-06-05 11:44:51] 2025-06-05 15:44:38,772 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 11:44:51] 2025-06-05 15:44:38,791 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 11:44:51] 2025-06-05 15:44:38,792 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 11:44:51] 2025-06-05 15:44:38,792 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 11:44:51] 2025-06-05 15:44:38,792 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 11:44:51] 2025-06-05 15:44:38,792 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 11:44:51] 2025-06-05 15:44:38,792 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 11:44:51] 2025-06-05 15:44:38,792 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 11:44:51] 2025-06-05 15:44:38,792 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 11:44:51] 2025-06-05 15:44:38,792 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 11:44:51] 2025-06-05 15:44:38,792 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 11:44:51] 2025-06-05 15:44:38,792 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 11:44:51] 2025-06-05 15:44:38,792 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 11:44:51] 2025-06-05 15:44:38,792 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 11:44:51] 2025-06-05 15:44:38,793 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 11:44:51] 2025-06-05 15:44:38,793 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 11:44:51] 2025-06-05 15:44:38,793 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 11:44:51] 2025-06-05 15:44:38,793 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 11:44:51] 2025-06-05 15:44:38,793 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 11:44:51] 2025-06-05 15:44:38,793 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 11:44:51] 2025-06-05 15:44:38,793 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 11:44:51] 2025-06-05 15:44:38,793 | INFO     | job 6677735578 has completed (purged errors)
[2025-06-05 11:44:51] 2025-06-05 15:44:38,793 | INFO     | overall cleanup function is called
[2025-06-05 11:44:51] 2025-06-05 15:44:39,801 | INFO     | --- collectZombieJob: --- 10, [3317082]
[2025-06-05 11:44:51] 2025-06-05 15:44:39,802 | INFO     | zombie collector waiting for pid 3317082
[2025-06-05 11:44:51] 2025-06-05 15:44:39,802 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 11:44:51] 2025-06-05 15:44:39,802 | INFO     | collected zombie processes
[2025-06-05 11:44:51] 2025-06-05 15:44:39,802 | INFO     | will attempt to kill all subprocesses of pid=3317082
[2025-06-05 11:44:51] 2025-06-05 15:44:40,018 | INFO     | process IDs to be killed: [3317082] (in reverse order)
[2025-06-05 11:44:51] 2025-06-05 15:44:40,084 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 11:44:51] 2025-06-05 15:44:40,085 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 11:44:51] 2025-06-05 15:44:40,098 | INFO     | did not find any defunct processes belonging to 3317082
[2025-06-05 11:44:51] 2025-06-05 15:44:40,105 | INFO     | did not find any defunct processes belonging to 3317082
[2025-06-05 11:44:51] 2025-06-05 15:44:40,106 | INFO     | ready for new job
[2025-06-05 11:44:51] 2025-06-05 15:44:40,106 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 11:44:51] 2025-06-05 15:44:40,108 | INFO     | **************************************
[2025-06-05 11:44:51] 2025-06-05 15:44:40,108 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 11:44:51] 2025-06-05 15:44:40,108 | INFO     | **************************************
[2025-06-05 11:44:51] 2025-06-05 15:44:40,108 | INFO     | 
[2025-06-05 11:44:51] 2025-06-05 15:44:40,123 | INFO     | architecture information:
[2025-06-05 11:44:51] 2025-06-05 15:44:40,124 | INFO     | executing command: cat /etc/os-release
[2025-06-05 11:44:51] 2025-06-05 15:44:40,138 | INFO     | cat /etc/os-release:
[2025-06-05 11:44:51] NAME="CentOS Linux"
[2025-06-05 11:44:51] VERSION="7 (Core)"
[2025-06-05 11:44:51] ID="centos"
[2025-06-05 11:44:51] ID_LIKE="rhel fedora"
[2025-06-05 11:44:51] VERSION_ID="7"
[2025-06-05 11:44:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 11:44:51] ANSI_COLOR="0;31"
[2025-06-05 11:44:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 11:44:51] HOME_URL="https://www.centos.org/"
[2025-06-05 11:44:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 11:44:51] 
[2025-06-05 11:44:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 11:44:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 11:44:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 11:44:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 11:44:51] 
[2025-06-05 11:44:51] 2025-06-05 15:44:40,138 | INFO     | **************************************
[2025-06-05 11:44:51] 2025-06-05 15:44:40,641 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 11:44:51] 2025-06-05 15:44:40,656 | INFO     | sufficient remaining disk space (75907465216 B)
[2025-06-05 11:44:51] 2025-06-05 15:44:40,657 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 11:44:51] 2025-06-05 15:44:40,657 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 11:44:51] 2025-06-05 15:44:40,657 | INFO     | update_server=False
[2025-06-05 11:44:51] 2025-06-05 15:44:40,657 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 11:44:51] 2025-06-05 15:44:40,657 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 11:44:51] 2025-06-05 15:44:40,658 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 11:44:51] 2025-06-05 15:44:40,658 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 11:44:51] 2025-06-05 15:44:40,658 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 11:44:51] 2025-06-05 15:44:40,658 | INFO     | aborting loop
[2025-06-05 11:44:51] 2025-06-05 15:44:40,658 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 11:44:51] 2025-06-05 15:44:40,658 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 11:44:51] 2025-06-05 15:44:40,799 | INFO     | all data control threads have been joined
[2025-06-05 11:44:51] 2025-06-05 15:44:40,836 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 11:44:51] 2025-06-05 15:44:41,327 | INFO     | all payload control threads have been joined
[2025-06-05 11:44:51] 2025-06-05 15:44:41,662 | INFO     | [job] retrieve thread has finished
[2025-06-05 11:44:51] 2025-06-05 15:44:41,663 | INFO     | [job] job monitor thread has finished
[2025-06-05 11:44:51] 2025-06-05 15:44:41,707 | INFO     | [payload] failed_post thread has finished
[2025-06-05 11:44:51] 2025-06-05 15:44:41,803 | INFO     | [data] control thread has finished
[2025-06-05 11:44:51] 2025-06-05 15:44:41,891 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 11:44:51] 2025-06-05 15:44:41,917 | INFO     | all job control threads have been joined
[2025-06-05 11:44:51] 2025-06-05 15:44:41,987 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 11:44:51] 2025-06-05 15:44:42,105 | INFO     | [job] validate thread has finished
[2025-06-05 11:44:51] 2025-06-05 15:44:42,332 | INFO     | [payload] control thread has finished
[2025-06-05 11:44:51] 2025-06-05 15:44:42,425 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 11:44:51] 2025-06-05 15:44:42,512 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 11:44:51] 2025-06-05 15:44:42,570 | INFO     | [data] copytool_in thread has finished
[2025-06-05 11:44:51] 2025-06-05 15:44:42,662 | INFO     | [data] copytool_out thread has finished
[2025-06-05 11:44:51] 2025-06-05 15:44:42,923 | INFO     | [job] control thread has finished
[2025-06-05 11:44:51] 2025-06-05 15:44:43,264 | INFO     | [payload] validate_post thread has finished
[2025-06-05 11:44:51] 2025-06-05 15:44:43,390 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 11:44:51] 2025-06-05 15:44:44,395 | INFO     | [job] queue monitor thread has finished
[2025-06-05 11:44:51] 2025-06-05 15:44:44,842 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 11:44:51] 2025-06-05 15:44:46,138 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140615555295040)>', '<ExcThread(monitor, started 140614511343360)>']
[2025-06-05 11:44:51] 2025-06-05 15:44:46,688 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 11:44:51] 2025-06-05 15:44:46,689 | INFO     | [monitor] control thread has ended
[2025-06-05 11:44:51] 2025-06-05 15:44:51,164 | INFO     | all workflow threads have been joined
[2025-06-05 11:44:51] 2025-06-05 15:44:51,165 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 11:44:51] 2025-06-05 15:44:51,166 | INFO     | traces error code: 0
[2025-06-05 11:44:51] 2025-06-05 15:44:51,166 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 11:44:51] 2025-06-05 15:44:51,298 [wrapper] ==== pilot stdout END ====
[2025-06-05 11:44:51] 2025-06-05 15:44:51,300 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 11:44:51] 2025-06-05 15:44:51,303 [wrapper] pilotpid: 3310670
[2025-06-05 11:44:51] 2025-06-05 15:44:51,305 [wrapper] Pilot exit status: 0
[2025-06-05 11:44:51] 2025-06-05 15:44:51,315 [wrapper] pandaids: 6677735578
[2025-06-05 11:44:51] 2025-06-05 15:44:51,367 [wrapper] cleanup supervisor_pilot 3455183 3310671
[2025-06-05 11:44:51] 2025-06-05 15:44:51,370 [wrapper] Test setup, not cleaning
[2025-06-05 11:44:51] 2025-06-05 15:44:51,372 [wrapper] apfmon messages muted
[2025-06-05 11:44:51] 2025-06-05 15:44:51,374 [wrapper] ==== wrapper stdout END ====
[2025-06-05 11:44:51] 2025-06-05 15:44:51,376 [wrapper] ==== wrapper stderr END ====
[2025-06-05 11:44:51]  *** Error codes and diagnostics ***
[2025-06-05 11:44:51]     "exeErrorCode": 0,
[2025-06-05 11:44:51]     "exeErrorDiag": "",
[2025-06-05 11:44:51]     "pilotErrorCode": 0,
[2025-06-05 11:44:51]     "pilotErrorDiag": "",
[2025-06-05 11:44:51]  *** Listing of results directory ***
[2025-06-05 11:44:51] total 380804
[2025-06-05 11:44:51] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 12:03 pilot3.tar.gz
[2025-06-05 11:44:51] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 12:11 queuedata.json
[2025-06-05 11:44:51] -rwx------. 1 boincer umatlas     37140 Jun  3 12:12 runpilot2-wrapper.sh
[2025-06-05 11:44:51] -rw-r--r--. 1 boincer umatlas       100 Jun  5 10:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 11:44:51] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  5 10:25 run_atlas
[2025-06-05 11:44:51] -rw-r--r--. 1 boincer umatlas       105 Jun  5 10:25 job.xml
[2025-06-05 11:44:51] -rw-r--r--. 2 boincer umatlas 216210079 Jun  5 10:25 EVNT.45006593._001532.pool.root.1
[2025-06-05 11:44:51] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 10:25 start_atlas.sh
[2025-06-05 11:44:51] drwxrwx--x. 2 boincer umatlas      4096 Jun  5 10:25 shared
[2025-06-05 11:44:51] -rw-r--r--. 2 boincer umatlas    508881 Jun  5 10:25 input.tar.gz
[2025-06-05 11:44:51] -rw-r--r--. 1 boincer umatlas         0 Jun  5 10:25 boinc_lockfile
[2025-06-05 11:44:51] -rw-r--r--. 1 boincer umatlas      2525 Jun  5 10:25 pandaJob.out
[2025-06-05 11:44:51] -rw-------. 1 boincer umatlas    983210 Jun  5 10:25 agis_schedconf.cvmfs.json
[2025-06-05 11:44:51] -rw-------. 1 boincer umatlas   1598969 Jun  5 10:25 agis_ddmendpoints.agis.ALL.json
[2025-06-05 11:44:51] drwx------. 4 boincer umatlas      4096 Jun  5 10:25 pilot3
[2025-06-05 11:44:51] -rw-r--r--. 1 boincer umatlas      6841 Jun  5 11:40 init_data.xml
[2025-06-05 11:44:51] -rw-------. 1 boincer umatlas        95 Jun  5 11:44 pilot_heartbeat.json
[2025-06-05 11:44:51] -rw-------. 1 boincer umatlas 168284276 Jun  5 11:44 HITS.45006595._038175.pool.root.1
[2025-06-05 11:44:51] -rw-r--r--. 1 boincer umatlas       530 Jun  5 11:44 boinc_task_state.xml
[2025-06-05 11:44:51] -rw-------. 1 boincer umatlas      1040 Jun  5 11:44 memory_monitor_summary.json
[2025-06-05 11:44:51] -rw-------. 1 boincer umatlas    369317 Jun  5 11:44 log.45006595._038175.job.log.tgz.1
[2025-06-05 11:44:51] -rw-------. 1 boincer umatlas      7721 Jun  5 11:44 heartbeat.json
[2025-06-05 11:44:51] -rw-r--r--. 1 boincer umatlas      8192 Jun  5 11:44 boinc_mmap_file
[2025-06-05 11:44:51] -rw-r--r--. 1 boincer umatlas        27 Jun  5 11:44 wrapper_checkpoint.txt
[2025-06-05 11:44:51] -rw-------. 1 boincer umatlas      4476 Jun  5 11:44 pilotlog.txt
[2025-06-05 11:44:51] -rw-------. 1 boincer umatlas    436983 Jun  5 11:44 log.45006595._038175.job.log.1
[2025-06-05 11:44:51] -rw-------. 1 boincer umatlas       357 Jun  5 11:44 output.list
[2025-06-05 11:44:51] -rw-r--r--. 1 boincer umatlas       620 Jun  5 11:44 runtime_log
[2025-06-05 11:44:51] -rw-------. 1 boincer umatlas    829440 Jun  5 11:44 result.tar.gz
[2025-06-05 11:44:51] -rw-------. 1 boincer umatlas       653 Jun  5 11:44 ZhNKDmHQjg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmOzkKDmF9BJMn.diag
[2025-06-05 11:44:51] -rw-r--r--. 1 boincer umatlas      8666 Jun  5 11:44 runtime_log.err
[2025-06-05 11:44:51] -rw-r--r--. 1 boincer umatlas     22545 Jun  5 11:44 stderr.txt
[2025-06-05 11:44:51] HITS file was successfully produced:
[2025-06-05 11:44:51] -rw-------. 1 boincer umatlas 168284276 Jun  5 11:44 shared/HITS.pool.root.1
[2025-06-05 11:44:51]  *** Contents of shared directory: ***
[2025-06-05 11:44:51] total 376820
[2025-06-05 11:44:51] -rw-r--r--. 2 boincer umatlas 216210079 Jun  5 10:25 ATLAS.root_0
[2025-06-05 11:44:51] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 10:25 start_atlas.sh
[2025-06-05 11:44:51] -rw-r--r--. 2 boincer umatlas    508881 Jun  5 10:25 input.tar.gz
[2025-06-05 11:44:51] -rw-------. 1 boincer umatlas 168284276 Jun  5 11:44 HITS.pool.root.1
[2025-06-05 11:44:51] -rw-------. 1 boincer umatlas    829440 Jun  5 11:44 result.tar.gz
11:44:53 (3306609): run_atlas exited; CPU time 31571.796974
11:44:53 (3306609): called boinc_finish(0)

</stderr_txt>
]]>

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