Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:25:46 (2961247): wrapper (7.7.26015): starting
10:25:46 (2961247): wrapper: running run_atlas (--nthreads 12)
[2025-06-05 10:25:46] Arguments: --nthreads 12
[2025-06-05 10:25:46] Threads: 12
[2025-06-05 10:25:46] Checking for CVMFS
[2025-06-05 10:25:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 10:25:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 10:25:46] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 10:25:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 10:25:46] 2.12.6.0 4996 2308 111468 146822 2 331 31583879 32935936 11693 16776704 0 4801628 99.730 3978772 32571 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-05 10:25:46] CVMFS is ok
[2025-06-05 10:25:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 10:25:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 10:25:46] Further information can be found at the LHC@home message board.
[2025-06-05 10:25:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 10:25:46] Checking for apptainer binary...
[2025-06-05 10:25:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 10:25:46] Running /usr/bin/apptainer --version
[2025-06-05 10:25:46] apptainer version 1.4.1-1.el9
[2025-06-05 10:25:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 10:25:47] c6-5-7-3.aglt2.org
[2025-06-05 10:25:47] apptainer works
[2025-06-05 10:25:47] Set ATHENA_PROC_NUMBER=12
[2025-06-05 10:25:47] Set ATHENA_CORE_NUMBER=12
[2025-06-05 10:25:47] Starting ATLAS job with PandaID=6677601664
[2025-06-05 10:25:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 13:00:45]  *** The last 200 lines of the pilot log: ***
[2025-06-05 13:00:45] 2025-06-05 17:00:21,908 | INFO     | total number of processed events: 400 (read)
[2025-06-05 13:00:45] 2025-06-05 17:00:21,924 | INFO     | executing command: lscpu
[2025-06-05 13:00:45] 2025-06-05 17:00:21,999 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 13:00:45] 2025-06-05 17:00:22,226 | INFO     | monitor loop #596: job 0:6677601664 is in state 'finished'
[2025-06-05 13:00:45] 2025-06-05 17:00:22,227 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 13:00:45] 2025-06-05 17:00:24,730 | INFO     | monitor loop #597: job 0:6677601664 is in state 'finished'
[2025-06-05 13:00:45] 2025-06-05 17:00:24,730 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 13:00:45] 2025-06-05 17:00:25,931 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-05 13:00:45] 2025-06-05 17:00:25,932 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677601664/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 13:00:45] 2025-06-05 17:00:25,933 | INFO     | extracted standard info from prmon json
[2025-06-05 13:00:45] 2025-06-05 17:00:25,933 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 13:00:45] 2025-06-05 17:00:25,933 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 13:00:45] 2025-06-05 17:00:25,934 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 13:00:45] 2025-06-05 17:00:25,934 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 13:00:45] 2025-06-05 17:00:25,938 | INFO     | fitting pss+swap vs Time
[2025-06-05 13:00:45] 2025-06-05 17:00:25,938 | INFO     | sum of square deviations: 1088827342.2105308
[2025-06-05 13:00:45] 2025-06-05 17:00:25,939 | INFO     | sum of deviations: -31477654721.736847
[2025-06-05 13:00:45] 2025-06-05 17:00:25,939 | INFO     | mean x: 1749138204.8421052
[2025-06-05 13:00:45] 2025-06-05 17:00:25,940 | INFO     | mean y: 2388869.677631579
[2025-06-05 13:00:45] 2025-06-05 17:00:25,940 | INFO     | -- intersect: 50569422170.695244
[2025-06-05 13:00:45] 2025-06-05 17:00:25,940 | INFO     | intersect: 50569422170.695244
[2025-06-05 13:00:45] 2025-06-05 17:00:25,940 | INFO     | chi2: 2.721395874280165
[2025-06-05 13:00:45] 2025-06-05 17:00:25,940 | INFO     | sum of square deviations: 984869433.3061236
[2025-06-05 13:00:45] 2025-06-05 17:00:25,941 | INFO     | sum of deviations: -19801837156.204082
[2025-06-05 13:00:45] 2025-06-05 17:00:25,941 | INFO     | mean x: 1749138052.3469388
[2025-06-05 13:00:45] 2025-06-05 17:00:25,941 | INFO     | mean y: 2405651.768707483
[2025-06-05 13:00:45] 2025-06-05 17:00:25,941 | INFO     | -- intersect: 35170668271.13281
[2025-06-05 13:00:45] 2025-06-05 17:00:25,942 | INFO     | intersect: 35170668271.13281
[2025-06-05 13:00:45] 2025-06-05 17:00:25,942 | INFO     | chi2: 2.060530820762036
[2025-06-05 13:00:45] 2025-06-05 17:00:25,942 | INFO     | current chi2=2.060530820762036 (change=24.28404701292986 %)
[2025-06-05 13:00:45] 2025-06-05 17:00:25,942 | INFO     | right removable region: 146
[2025-06-05 13:00:45] 2025-06-05 17:00:25,942 | INFO     | sum of square deviations: 984846741.6054438
[2025-06-05 13:00:45] 2025-06-05 17:00:25,943 | INFO     | sum of deviations: -55813691611.30614
[2025-06-05 13:00:45] 2025-06-05 17:00:25,943 | INFO     | mean x: 1749138357.3537414
[2025-06-05 13:00:45] 2025-06-05 17:00:25,943 | INFO     | mean y: 2424131.102040816
[2025-06-05 13:00:45] 2025-06-05 17:00:25,943 | INFO     | -- intersect: 99130404900.68239
[2025-06-05 13:00:45] 2025-06-05 17:00:25,944 | INFO     | intersect: 99130404900.68239
[2025-06-05 13:00:45] 2025-06-05 17:00:25,944 | INFO     | chi2: 1.0753117733474422
[2025-06-05 13:00:45] 2025-06-05 17:00:25,944 | INFO     | current chi2=1.0753117733474422 (change=60.48675668578088 %)
[2025-06-05 13:00:45] 2025-06-05 17:00:25,944 | INFO     | sum of square deviations: 887721289.8943639
[2025-06-05 13:00:45] 2025-06-05 17:00:25,945 | INFO     | sum of deviations: -52308082308.23944
[2025-06-05 13:00:45] 2025-06-05 17:00:25,945 | INFO     | mean x: 1749138509.8521128
[2025-06-05 13:00:45] 2025-06-05 17:00:25,945 | INFO     | mean y: 2418527.4647887326
[2025-06-05 13:00:45] 2025-06-05 17:00:25,945 | INFO     | -- intersect: 103068642333.74876
[2025-06-05 13:00:45] 2025-06-05 17:00:25,945 | INFO     | intersect: 103068642333.74876
[2025-06-05 13:00:45] 2025-06-05 17:00:25,946 | INFO     | chi2: 1.0487837081145066
[2025-06-05 13:00:45] 2025-06-05 17:00:25,946 | INFO     | current chi2=1.0487837081145066 (change=2.467011511494366 %)
[2025-06-05 13:00:45] 2025-06-05 17:00:25,946 | INFO     | left removable region: 20
[2025-06-05 13:00:45] 2025-06-05 17:00:25,946 | INFO     | sum of square deviations: 620189437.4999986
[2025-06-05 13:00:45] 2025-06-05 17:00:25,947 | INFO     | sum of deviations: -28910234368.66663
[2025-06-05 13:00:45] 2025-06-05 17:00:25,947 | INFO     | mean x: 1749138631.8333333
[2025-06-05 13:00:45] 2025-06-05 17:00:25,947 | INFO     | mean y: 2418232.015873016
[2025-06-05 13:00:45] 2025-06-05 17:00:25,947 | INFO     | -- intersect: 81538808134.80373
[2025-06-05 13:00:45] 2025-06-05 17:00:25,947 | INFO     | intersect: 81538808134.80373
[2025-06-05 13:00:45] 2025-06-05 17:00:25,947 | INFO     | chi2: 0.34183859185770193
[2025-06-05 13:00:45] 2025-06-05 17:00:25,948 | INFO     | -- intersect: 81538808134.80373
[2025-06-05 13:00:45] 2025-06-05 17:00:25,948 | INFO     | current memory leak: -46.62 B/s (using 126 data points, chi2=0.34)
[2025-06-05 13:00:45] 2025-06-05 17:00:25,948 | INFO     | ..............................
[2025-06-05 13:00:45] 2025-06-05 17:00:25,949 | INFO     | . Timing measurements:
[2025-06-05 13:00:45] 2025-06-05 17:00:25,949 | INFO     | . get job = 0 s
[2025-06-05 13:00:45] 2025-06-05 17:00:25,949 | INFO     | . initial setup = 3 s
[2025-06-05 13:00:45] 2025-06-05 17:00:25,949 | INFO     | . payload setup = 11 s
[2025-06-05 13:00:45] 2025-06-05 17:00:25,949 | INFO     | . stage-in = 0 s
[2025-06-05 13:00:45] 2025-06-05 17:00:25,949 | INFO     | . payload execution = 9224 s
[2025-06-05 13:00:45] 2025-06-05 17:00:25,949 | INFO     | . stage-out = 0 s
[2025-06-05 13:00:45] 2025-06-05 17:00:25,949 | INFO     | . log creation = 0 s
[2025-06-05 13:00:45] 2025-06-05 17:00:25,949 | INFO     | ..............................
[2025-06-05 13:00:45] 2025-06-05 17:00:26,376 | INFO     | 
[2025-06-05 13:00:45] 2025-06-05 17:00:26,377 | INFO     | job summary report
[2025-06-05 13:00:45] 2025-06-05 17:00:26,377 | INFO     | --------------------------------------------------
[2025-06-05 13:00:45] 2025-06-05 17:00:26,377 | INFO     | PanDA job id: 6677601664
[2025-06-05 13:00:45] 2025-06-05 17:00:26,377 | INFO     | task id: 45006595
[2025-06-05 13:00:45] 2025-06-05 17:00:26,377 | INFO     | errors: (none)
[2025-06-05 13:00:45] 2025-06-05 17:00:26,377 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 13:00:45] 2025-06-05 17:00:26,377 | INFO     | pilot state: finished 
[2025-06-05 13:00:45] 2025-06-05 17:00:26,377 | INFO     | transexitcode: 0
[2025-06-05 13:00:45] 2025-06-05 17:00:26,377 | INFO     | exeerrorcode: 0
[2025-06-05 13:00:45] 2025-06-05 17:00:26,377 | INFO     | exeerrordiag: 
[2025-06-05 13:00:45] 2025-06-05 17:00:26,377 | INFO     | exitcode: 0
[2025-06-05 13:00:45] 2025-06-05 17:00:26,377 | INFO     | exitmsg: OK
[2025-06-05 13:00:45] 2025-06-05 17:00:26,377 | INFO     | cpuconsumptiontime: 36617 s
[2025-06-05 13:00:45] 2025-06-05 17:00:26,377 | INFO     | nevents: 400
[2025-06-05 13:00:45] 2025-06-05 17:00:26,378 | INFO     | neventsw: 0
[2025-06-05 13:00:45] 2025-06-05 17:00:26,378 | INFO     | pid: 2971818
[2025-06-05 13:00:45] 2025-06-05 17:00:26,378 | INFO     | pgrp: 2971818
[2025-06-05 13:00:45] 2025-06-05 17:00:26,378 | INFO     | corecount: 12
[2025-06-05 13:00:45] 2025-06-05 17:00:26,378 | INFO     | event service: False
[2025-06-05 13:00:45] 2025-06-05 17:00:26,378 | INFO     | sizes: {0: 2397343, 1: 2397371, 7: 2397577, 12: 2397605, 9239: 2425684, 9240: 2434809, 9245: 2434923}
[2025-06-05 13:00:45] 2025-06-05 17:00:26,378 | INFO     | --------------------------------------------------
[2025-06-05 13:00:45] 2025-06-05 17:00:26,378 | INFO     | 
[2025-06-05 13:00:45] 2025-06-05 17:00:26,378 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 13:00:45] 2025-06-05 17:00:26,396 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 13:00:45] 2025-06-05 17:00:26,397 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 13:00:45] 2025-06-05 17:00:26,397 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 13:00:45] 2025-06-05 17:00:26,397 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 13:00:45] 2025-06-05 17:00:26,397 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 13:00:45] 2025-06-05 17:00:26,397 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 13:00:45] 2025-06-05 17:00:26,397 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 13:00:45] 2025-06-05 17:00:26,397 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 13:00:45] 2025-06-05 17:00:26,397 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 13:00:45] 2025-06-05 17:00:26,397 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 13:00:45] 2025-06-05 17:00:26,397 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 13:00:45] 2025-06-05 17:00:26,398 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 13:00:45] 2025-06-05 17:00:26,398 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 13:00:45] 2025-06-05 17:00:26,398 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 13:00:45] 2025-06-05 17:00:26,398 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 13:00:45] 2025-06-05 17:00:26,398 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 13:00:45] 2025-06-05 17:00:26,398 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 13:00:45] 2025-06-05 17:00:26,398 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 13:00:45] 2025-06-05 17:00:26,398 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 13:00:45] 2025-06-05 17:00:26,398 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 13:00:45] 2025-06-05 17:00:26,398 | INFO     | job 6677601664 has completed (purged errors)
[2025-06-05 13:00:45] 2025-06-05 17:00:26,399 | INFO     | overall cleanup function is called
[2025-06-05 13:00:45] 2025-06-05 17:00:27,407 | INFO     | --- collectZombieJob: --- 10, [2971818]
[2025-06-05 13:00:45] 2025-06-05 17:00:27,407 | INFO     | zombie collector waiting for pid 2971818
[2025-06-05 13:00:45] 2025-06-05 17:00:27,408 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 13:00:45] 2025-06-05 17:00:27,408 | INFO     | collected zombie processes
[2025-06-05 13:00:45] 2025-06-05 17:00:27,408 | INFO     | will attempt to kill all subprocesses of pid=2971818
[2025-06-05 13:00:45] 2025-06-05 17:00:27,662 | INFO     | process IDs to be killed: [2971818] (in reverse order)
[2025-06-05 13:00:45] 2025-06-05 17:00:27,737 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 13:00:45] 2025-06-05 17:00:27,738 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 13:00:45] 2025-06-05 17:00:27,747 | INFO     | did not find any defunct processes belonging to 2971818
[2025-06-05 13:00:45] 2025-06-05 17:00:27,757 | INFO     | did not find any defunct processes belonging to 2971818
[2025-06-05 13:00:45] 2025-06-05 17:00:27,758 | INFO     | ready for new job
[2025-06-05 13:00:45] 2025-06-05 17:00:27,758 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 13:00:45] 2025-06-05 17:00:27,760 | INFO     | **************************************
[2025-06-05 13:00:45] 2025-06-05 17:00:27,760 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 13:00:45] 2025-06-05 17:00:27,760 | INFO     | **************************************
[2025-06-05 13:00:45] 2025-06-05 17:00:27,760 | INFO     | 
[2025-06-05 13:00:45] 2025-06-05 17:00:27,775 | INFO     | architecture information:
[2025-06-05 13:00:45] 2025-06-05 17:00:27,776 | INFO     | executing command: cat /etc/os-release
[2025-06-05 13:00:45] 2025-06-05 17:00:27,790 | INFO     | cat /etc/os-release:
[2025-06-05 13:00:45] NAME="CentOS Linux"
[2025-06-05 13:00:45] VERSION="7 (Core)"
[2025-06-05 13:00:45] ID="centos"
[2025-06-05 13:00:45] ID_LIKE="rhel fedora"
[2025-06-05 13:00:45] VERSION_ID="7"
[2025-06-05 13:00:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 13:00:45] ANSI_COLOR="0;31"
[2025-06-05 13:00:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 13:00:45] HOME_URL="https://www.centos.org/"
[2025-06-05 13:00:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 13:00:45] 
[2025-06-05 13:00:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 13:00:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 13:00:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 13:00:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 13:00:45] 
[2025-06-05 13:00:45] 2025-06-05 17:00:27,791 | INFO     | **************************************
[2025-06-05 13:00:45] 2025-06-05 17:00:28,294 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 13:00:45] 2025-06-05 17:00:28,309 | INFO     | sufficient remaining disk space (76359401472 B)
[2025-06-05 13:00:45] 2025-06-05 17:00:28,310 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 13:00:45] 2025-06-05 17:00:28,310 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 13:00:45] 2025-06-05 17:00:28,310 | INFO     | update_server=False
[2025-06-05 13:00:45] 2025-06-05 17:00:28,310 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 13:00:45] 2025-06-05 17:00:28,310 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 13:00:45] 2025-06-05 17:00:28,311 | INFO     | aborting loop
[2025-06-05 13:00:45] 2025-06-05 17:00:28,750 | INFO     | all job control threads have been joined
[2025-06-05 13:00:45] 2025-06-05 17:00:28,802 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 13:00:45] 2025-06-05 17:00:29,023 | INFO     | all data control threads have been joined
[2025-06-05 13:00:45] 2025-06-05 17:00:29,155 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 13:00:45] 2025-06-05 17:00:29,155 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 13:00:45] 2025-06-05 17:00:29,155 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 13:00:45] 2025-06-05 17:00:29,315 | INFO     | [job] retrieve thread has finished
[2025-06-05 13:00:45] 2025-06-05 17:00:29,316 | INFO     | [job] job monitor thread has finished
[2025-06-05 13:00:45] 2025-06-05 17:00:29,323 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 13:00:45] 2025-06-05 17:00:29,634 | INFO     | all payload control threads have been joined
[2025-06-05 13:00:45] 2025-06-05 17:00:29,755 | INFO     | [job] control thread has finished
[2025-06-05 13:00:45] 2025-06-05 17:00:29,868 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 13:00:45] 2025-06-05 17:00:30,028 | INFO     | [data] control thread has finished
[2025-06-05 13:00:45] 2025-06-05 17:00:30,108 | INFO     | [job] validate thread has finished
[2025-06-05 13:00:45] 2025-06-05 17:00:30,157 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 13:00:45] 2025-06-05 17:00:30,353 | INFO     | [data] copytool_in thread has finished
[2025-06-05 13:00:45] 2025-06-05 17:00:30,549 | INFO     | [payload] validate_post thread has finished
[2025-06-05 13:00:45] 2025-06-05 17:00:30,640 | INFO     | [payload] control thread has finished
[2025-06-05 13:00:45] 2025-06-05 17:00:30,808 | INFO     | [data] copytool_out thread has finished
[2025-06-05 13:00:45] 2025-06-05 17:00:30,810 | INFO     | [payload] failed_post thread has finished
[2025-06-05 13:00:45] 2025-06-05 17:00:31,058 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 13:00:45] 2025-06-05 17:00:31,393 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 13:00:45] 2025-06-05 17:00:32,064 | INFO     | [job] queue monitor thread has finished
[2025-06-05 13:00:45] 2025-06-05 17:00:35,404 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 13:00:45] 2025-06-05 17:00:38,360 | INFO     | job.realtimelogging is not enabled
[2025-06-05 13:00:45] 2025-06-05 17:00:39,365 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 13:00:45] 2025-06-05 17:00:40,138 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139776914921280)>', '<ExcThread(monitor, started 139776237737728)>']
[2025-06-05 13:00:45] 2025-06-05 17:00:40,209 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 13:00:45] 2025-06-05 17:00:40,210 | INFO     | [monitor] control thread has ended
[2025-06-05 13:00:45] 2025-06-05 17:00:45,162 | INFO     | all workflow threads have been joined
[2025-06-05 13:00:45] 2025-06-05 17:00:45,163 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 13:00:45] 2025-06-05 17:00:45,163 | INFO     | traces error code: 0
[2025-06-05 13:00:45] 2025-06-05 17:00:45,163 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 13:00:45] 2025-06-05 17:00:45,305 [wrapper] ==== pilot stdout END ====
[2025-06-05 13:00:45] 2025-06-05 17:00:45,308 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 13:00:45] 2025-06-05 17:00:45,311 [wrapper] pilotpid: 2964805
[2025-06-05 13:00:45] 2025-06-05 17:00:45,313 [wrapper] Pilot exit status: 0
[2025-06-05 13:00:45] 2025-06-05 17:00:45,326 [wrapper] pandaids: 6677601664
[2025-06-05 13:00:45] 2025-06-05 17:00:45,385 [wrapper] cleanup supervisor_pilot 3215349 2964806
[2025-06-05 13:00:45] 2025-06-05 17:00:45,388 [wrapper] Test setup, not cleaning
[2025-06-05 13:00:45] 2025-06-05 17:00:45,391 [wrapper] apfmon messages muted
[2025-06-05 13:00:45] 2025-06-05 17:00:45,394 [wrapper] ==== wrapper stdout END ====
[2025-06-05 13:00:45] 2025-06-05 17:00:45,397 [wrapper] ==== wrapper stderr END ====
[2025-06-05 13:00:45]  *** Error codes and diagnostics ***
[2025-06-05 13:00:45]     "exeErrorCode": 0,
[2025-06-05 13:00:45]     "exeErrorDiag": "",
[2025-06-05 13:00:45]     "pilotErrorCode": 0,
[2025-06-05 13:00:45]     "pilotErrorDiag": "",
[2025-06-05 13:00:45]  *** Listing of results directory ***
[2025-06-05 13:00:45] total 391020
[2025-06-05 13:00:45] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 07:50 pilot3.tar.gz
[2025-06-05 13:00:45] -rwx------. 1 boincer umatlas     37140 Jun  3 07:52 runpilot2-wrapper.sh
[2025-06-05 13:00:45] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 07:52 queuedata.json
[2025-06-05 13:00:45] -rw-r--r--. 1 boincer umatlas       100 Jun  5 10:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 13:00:45] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  5 10:25 run_atlas
[2025-06-05 13:00:45] -rw-r--r--. 1 boincer umatlas       105 Jun  5 10:25 job.xml
[2025-06-05 13:00:45] -rw-r--r--. 2 boincer umatlas 216152415 Jun  5 10:25 EVNT.45006593._001257.pool.root.1
[2025-06-05 13:00:45] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 10:25 start_atlas.sh
[2025-06-05 13:00:45] drwxrwx--x. 2 boincer umatlas      4096 Jun  5 10:25 shared
[2025-06-05 13:00:45] -rw-r--r--. 2 boincer umatlas    508884 Jun  5 10:25 input.tar.gz
[2025-06-05 13:00:45] -rw-r--r--. 1 boincer umatlas         0 Jun  5 10:25 boinc_lockfile
[2025-06-05 13:00:45] -rw-r--r--. 1 boincer umatlas      2526 Jun  5 10:25 pandaJob.out
[2025-06-05 13:00:45] -rw-------. 1 boincer umatlas    983210 Jun  5 10:25 agis_schedconf.cvmfs.json
[2025-06-05 13:00:45] -rw-------. 1 boincer umatlas   1598969 Jun  5 10:25 agis_ddmendpoints.agis.ALL.json
[2025-06-05 13:00:45] drwx------. 4 boincer umatlas      4096 Jun  5 10:26 pilot3
[2025-06-05 13:00:45] -rw-r--r--. 1 boincer umatlas      6839 Jun  5 12:57 init_data.xml
[2025-06-05 13:00:45] -rw-------. 1 boincer umatlas        95 Jun  5 12:59 pilot_heartbeat.json
[2025-06-05 13:00:45] -rw-------. 1 boincer umatlas 178019989 Jun  5 12:59 HITS.45006595._031267.pool.root.1
[2025-06-05 13:00:45] -rw-r--r--. 1 boincer umatlas       530 Jun  5 12:59 boinc_task_state.xml
[2025-06-05 13:00:45] -rw-------. 1 boincer umatlas      1035 Jun  5 13:00 memory_monitor_summary.json
[2025-06-05 13:00:45] -rw-------. 1 boincer umatlas    403147 Jun  5 13:00 log.45006595._031267.job.log.tgz.1
[2025-06-05 13:00:45] -rw-------. 1 boincer umatlas      7713 Jun  5 13:00 heartbeat.json
[2025-06-05 13:00:45] -rw-r--r--. 1 boincer umatlas        27 Jun  5 13:00 wrapper_checkpoint.txt
[2025-06-05 13:00:45] -rw-r--r--. 1 boincer umatlas      8192 Jun  5 13:00 boinc_mmap_file
[2025-06-05 13:00:45] -rw-------. 1 boincer umatlas      4425 Jun  5 13:00 pilotlog.txt
[2025-06-05 13:00:45] -rw-------. 1 boincer umatlas    800717 Jun  5 13:00 log.45006595._031267.job.log.1
[2025-06-05 13:00:45] -rw-------. 1 boincer umatlas       357 Jun  5 13:00 output.list
[2025-06-05 13:00:45] -rw-r--r--. 1 boincer umatlas       620 Jun  5 13:00 runtime_log
[2025-06-05 13:00:45] -rw-------. 1 boincer umatlas   1218560 Jun  5 13:00 result.tar.gz
[2025-06-05 13:00:45] -rw-r--r--. 1 boincer umatlas      8661 Jun  5 13:00 runtime_log.err
[2025-06-05 13:00:45] -rw-------. 1 boincer umatlas       653 Jun  5 13:00 CMuLDmQNfg7n9Rq4apOajLDm4fhM0noT9bVof3QYDm8VYKDmzKPs9m.diag
[2025-06-05 13:00:45] -rw-r--r--. 1 boincer umatlas     21139 Jun  5 13:00 stderr.txt
[2025-06-05 13:00:45] HITS file was successfully produced:
[2025-06-05 13:00:45] -rw-------. 1 boincer umatlas 178019989 Jun  5 12:59 shared/HITS.pool.root.1
[2025-06-05 13:00:45]  *** Contents of shared directory: ***
[2025-06-05 13:00:45] total 386648
[2025-06-05 13:00:45] -rw-r--r--. 2 boincer umatlas 216152415 Jun  5 10:25 ATLAS.root_0
[2025-06-05 13:00:45] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 10:25 start_atlas.sh
[2025-06-05 13:00:45] -rw-r--r--. 2 boincer umatlas    508884 Jun  5 10:25 input.tar.gz
[2025-06-05 13:00:45] -rw-------. 1 boincer umatlas 178019989 Jun  5 12:59 HITS.pool.root.1
[2025-06-05 13:00:45] -rw-------. 1 boincer umatlas   1218560 Jun  5 13:00 result.tar.gz
13:00:47 (2961247): run_atlas exited; CPU time 36782.409125
13:00:47 (2961247): called boinc_finish(0)

</stderr_txt>
]]>

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