Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:18:06 (22447): wrapper (7.7.26015): starting
04:18:06 (22447): wrapper: running run_atlas (--nthreads 8)
[2025-06-06 04:18:06] Arguments: --nthreads 8
[2025-06-06 04:18:06] Threads: 8
[2025-06-06 04:18:06] Checking for CVMFS
[2025-06-06 04:18:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 04:18:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 04:18:10] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 04:30:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 04:30:46] 2.11.2.0 555 35590 98720 146839 0 63 16759529 25165824 3517 130560 0 18880881 99.826 21273456 2738 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-06 04:30:46] CVMFS is ok
[2025-06-06 04:30:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 04:30:46] Checking for apptainer binary...
[2025-06-06 04:30:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 04:30:46] Running /usr/bin/apptainer --version
[2025-06-06 04:30:46] apptainer version 1.3.2-1.el7
[2025-06-06 04:30:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 04:30:48] cg-vwn340.simple-grid.lan
[2025-06-06 04:30:48] apptainer works
[2025-06-06 04:30:48] Set ATHENA_PROC_NUMBER=8
[2025-06-06 04:30:48] Set ATHENA_CORE_NUMBER=8
[2025-06-06 04:30:48] Starting ATLAS job with PandaID=6677548556
[2025-06-06 04:30:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 08:25:09]  *** The last 200 lines of the pilot log: ***
[2025-06-06 08:25:09] 2025-06-06 06:19:12,516 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 08:25:09] 2025-06-06 06:19:12,516 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 08:25:09] 2025-06-06 06:19:12,516 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 08:25:09] 2025-06-06 06:19:12,521 | INFO     | fitting pss+swap vs Time
[2025-06-06 08:25:09] 2025-06-06 06:19:12,522 | INFO     | sum of square deviations: 3346927870.0
[2025-06-06 08:25:09] 2025-06-06 06:19:12,524 | INFO     | sum of deviations: -27238618835.0
[2025-06-06 08:25:09] 2025-06-06 06:19:12,524 | INFO     | mean x: 1749183937.0
[2025-06-06 08:25:09] 2025-06-06 06:19:12,524 | INFO     | mean y: 2496594.262443439
[2025-06-06 08:25:09] 2025-06-06 06:19:12,525 | INFO     | -- intersect: 14238045247.49579
[2025-06-06 08:25:09] 2025-06-06 06:19:12,525 | INFO     | intersect: 14238045247.49579
[2025-06-06 08:25:09] 2025-06-06 06:19:12,525 | INFO     | chi2: 2.485232609613766
[2025-06-06 08:25:09] 2025-06-06 06:19:12,526 | INFO     | sum of square deviations: 3124858590.0
[2025-06-06 08:25:09] 2025-06-06 06:19:12,527 | INFO     | sum of deviations: -12182293103.00001
[2025-06-06 08:25:09] 2025-06-06 06:19:12,527 | INFO     | mean x: 1749183784.5
[2025-06-06 08:25:09] 2025-06-06 06:19:12,528 | INFO     | mean y: 2506751.4166666665
[2025-06-06 08:25:09] 2025-06-06 06:19:12,528 | INFO     | -- intersect: 6821717586.104008
[2025-06-06 08:25:09] 2025-06-06 06:19:12,528 | INFO     | intersect: 6821717586.104008
[2025-06-06 08:25:09] 2025-06-06 06:19:12,528 | INFO     | chi2: 1.7185071778979655
[2025-06-06 08:25:09] 2025-06-06 06:19:12,528 | INFO     | current chi2=1.7185071778979655 (change=30.851254274945255 %)
[2025-06-06 08:25:09] 2025-06-06 06:19:12,529 | INFO     | sum of square deviations: 2912836010.0
[2025-06-06 08:25:09] 2025-06-06 06:19:12,530 | INFO     | sum of deviations: -11865542978.000002
[2025-06-06 08:25:09] 2025-06-06 06:19:12,531 | INFO     | mean x: 1749183632.0
[2025-06-06 08:25:09] 2025-06-06 06:19:12,531 | INFO     | mean y: 2506979.2843601895
[2025-06-06 08:25:09] 2025-06-06 06:19:12,531 | INFO     | -- intersect: 7127869852.668413
[2025-06-06 08:25:09] 2025-06-06 06:19:12,531 | INFO     | intersect: 7127869852.668413
[2025-06-06 08:25:09] 2025-06-06 06:19:12,531 | INFO     | chi2: 1.7173379204717436
[2025-06-06 08:25:09] 2025-06-06 06:19:12,531 | INFO     | current chi2=1.7173379204717436 (change=0.06803913543451569 %)
[2025-06-06 08:25:09] 2025-06-06 06:19:12,532 | INFO     | right removable region: 210
[2025-06-06 08:25:09] 2025-06-06 06:19:12,532 | INFO     | sum of square deviations: 3124858590.0
[2025-06-06 08:25:09] 2025-06-06 06:19:12,534 | INFO     | sum of deviations: -61501233309.499985
[2025-06-06 08:25:09] 2025-06-06 06:19:12,534 | INFO     | mean x: 1749184089.5
[2025-06-06 08:25:09] 2025-06-06 06:19:12,534 | INFO     | mean y: 2519890.717592593
[2025-06-06 08:25:09] 2025-06-06 06:19:12,534 | INFO     | -- intersect: 34428710929.84708
[2025-06-06 08:25:09] 2025-06-06 06:19:12,534 | INFO     | intersect: 34428710929.84708
[2025-06-06 08:25:09] 2025-06-06 06:19:12,535 | INFO     | chi2: 0.9957732686337828
[2025-06-06 08:25:09] 2025-06-06 06:19:12,535 | INFO     | current chi2=0.9957732686337828 (change=59.93239164890334 %)
[2025-06-06 08:25:09] 2025-06-06 06:19:12,535 | INFO     | sum of square deviations: 2912836010.0
[2025-06-06 08:25:09] 2025-06-06 06:19:12,537 | INFO     | sum of deviations: -57427762346.99999
[2025-06-06 08:25:09] 2025-06-06 06:19:12,537 | INFO     | mean x: 1749184242.0
[2025-06-06 08:25:09] 2025-06-06 06:19:12,537 | INFO     | mean y: 2516932.9763033176
[2025-06-06 08:25:09] 2025-06-06 06:19:12,537 | INFO     | -- intersect: 34488405120.925934
[2025-06-06 08:25:09] 2025-06-06 06:19:12,537 | INFO     | intersect: 34488405120.925934
[2025-06-06 08:25:09] 2025-06-06 06:19:12,538 | INFO     | chi2: 0.9861248892908596
[2025-06-06 08:25:09] 2025-06-06 06:19:12,538 | INFO     | current chi2=0.9861248892908596 (change=0.968933355296925 %)
[2025-06-06 08:25:09] 2025-06-06 06:19:12,538 | INFO     | left removable region: 20
[2025-06-06 08:25:09] 2025-06-06 06:19:12,538 | INFO     | sum of square deviations: 2126802667.5
[2025-06-06 08:25:09] 2025-06-06 06:19:12,540 | INFO     | sum of deviations: -28074252649.999996
[2025-06-06 08:25:09] 2025-06-06 06:19:12,540 | INFO     | mean x: 1749184211.5
[2025-06-06 08:25:09] 2025-06-06 06:19:12,540 | INFO     | mean y: 2517659.1578947366
[2025-06-06 08:25:09] 2025-06-06 06:19:12,540 | INFO     | -- intersect: 23092125470.664944
[2025-06-06 08:25:09] 2025-06-06 06:19:12,540 | INFO     | intersect: 23092125470.664944
[2025-06-06 08:25:09] 2025-06-06 06:19:12,540 | INFO     | chi2: 0.16581417175883523
[2025-06-06 08:25:09] 2025-06-06 06:19:12,541 | INFO     | -- intersect: 23092125470.664944
[2025-06-06 08:25:09] 2025-06-06 06:19:12,541 | INFO     | current memory leak: -13.20 B/s (using 190 data points, chi2=0.17)
[2025-06-06 08:25:09] 2025-06-06 06:19:12,542 | INFO     | ..............................
[2025-06-06 08:25:09] 2025-06-06 06:19:12,542 | INFO     | . Timing measurements:
[2025-06-06 08:25:09] 2025-06-06 06:19:12,542 | INFO     | . get job = 0 s
[2025-06-06 08:25:09] 2025-06-06 06:19:12,542 | INFO     | . initial setup = 2 s
[2025-06-06 08:25:09] 2025-06-06 06:19:12,542 | INFO     | . payload setup = 28 s
[2025-06-06 08:25:09] 2025-06-06 06:19:12,542 | INFO     | . stage-in = 0 s
[2025-06-06 08:25:09] 2025-06-06 06:19:12,542 | INFO     | . payload execution = 13448 s
[2025-06-06 08:25:09] 2025-06-06 06:19:12,542 | INFO     | . stage-out = 3 s
[2025-06-06 08:25:09] 2025-06-06 06:19:12,542 | INFO     | . log creation = 0 s
[2025-06-06 08:25:09] 2025-06-06 06:19:12,543 | INFO     | ..............................
[2025-06-06 08:25:09] 2025-06-06 06:19:12,684 | INFO     | 
[2025-06-06 08:25:09] 2025-06-06 06:19:12,685 | INFO     | job summary report
[2025-06-06 08:25:09] 2025-06-06 06:19:12,685 | INFO     | --------------------------------------------------
[2025-06-06 08:25:09] 2025-06-06 06:19:12,685 | INFO     | PanDA job id: 6677548556
[2025-06-06 08:25:09] 2025-06-06 06:19:12,685 | INFO     | task id: 45006595
[2025-06-06 08:25:09] 2025-06-06 06:19:12,685 | INFO     | errors: (none)
[2025-06-06 08:25:09] 2025-06-06 06:19:12,685 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 08:25:09] 2025-06-06 06:19:12,685 | INFO     | pilot state: finished 
[2025-06-06 08:25:09] 2025-06-06 06:19:12,685 | INFO     | transexitcode: 0
[2025-06-06 08:25:09] 2025-06-06 06:19:12,686 | INFO     | exeerrorcode: 0
[2025-06-06 08:25:09] 2025-06-06 06:19:12,686 | INFO     | exeerrordiag: 
[2025-06-06 08:25:09] 2025-06-06 06:19:12,686 | INFO     | exitcode: 0
[2025-06-06 08:25:09] 2025-06-06 06:19:12,686 | INFO     | exitmsg: OK
[2025-06-06 08:25:09] 2025-06-06 06:19:12,686 | INFO     | cpuconsumptiontime: 50650 s
[2025-06-06 08:25:09] 2025-06-06 06:19:12,686 | INFO     | nevents: 400
[2025-06-06 08:25:09] 2025-06-06 06:19:12,686 | INFO     | neventsw: 0
[2025-06-06 08:25:09] 2025-06-06 06:19:12,686 | INFO     | pid: 14721
[2025-06-06 08:25:09] 2025-06-06 06:19:12,686 | INFO     | pgrp: 14721
[2025-06-06 08:25:09] 2025-06-06 06:19:12,686 | INFO     | corecount: 8
[2025-06-06 08:25:09] 2025-06-06 06:19:12,686 | INFO     | event service: False
[2025-06-06 08:25:09] 2025-06-06 06:19:12,687 | INFO     | sizes: {0: 2397172, 1: 2397371, 12: 2397371, 20: 2397605, 23: 2397633, 13480: 2427202, 13481: 2427329, 13484: 2436328, 13486: 2436384, 13579: 2436554}
[2025-06-06 08:25:09] 2025-06-06 06:19:12,687 | INFO     | --------------------------------------------------
[2025-06-06 08:25:09] 2025-06-06 06:19:12,687 | INFO     | 
[2025-06-06 08:25:09] 2025-06-06 06:19:12,687 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-06-06 08:25:09] 2025-06-06 06:19:12,803 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 08:25:09] 2025-06-06 06:19:12,803 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 08:25:09] 2025-06-06 06:19:12,803 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 08:25:09] 2025-06-06 06:19:12,804 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 08:25:09] 2025-06-06 06:19:12,804 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 08:25:09] 2025-06-06 06:19:12,804 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 08:25:09] 2025-06-06 06:19:12,804 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 08:25:09] 2025-06-06 06:19:12,804 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 08:25:09] 2025-06-06 06:19:12,804 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 08:25:09] 2025-06-06 06:19:12,804 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 08:25:09] 2025-06-06 06:19:12,804 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 08:25:09] 2025-06-06 06:19:12,804 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 08:25:09] 2025-06-06 06:19:12,804 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 08:25:09] 2025-06-06 06:19:12,804 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 08:25:09] 2025-06-06 06:19:12,804 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 08:25:09] 2025-06-06 06:19:12,805 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 08:25:09] 2025-06-06 06:19:12,805 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 08:25:09] 2025-06-06 06:19:12,805 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 08:25:09] 2025-06-06 06:19:12,805 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 08:25:09] 2025-06-06 06:19:12,805 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 08:25:09] 2025-06-06 06:19:12,805 | INFO     | job 6677548556 has completed (purged errors)
[2025-06-06 08:25:09] 2025-06-06 06:19:12,805 | INFO     | overall cleanup function is called
[2025-06-06 08:25:09] 2025-06-06 06:19:13,815 | INFO     | --- collectZombieJob: --- 10, [14721]
[2025-06-06 08:25:09] 2025-06-06 06:19:13,815 | INFO     | zombie collector waiting for pid 14721
[2025-06-06 08:25:09] 2025-06-06 06:19:13,815 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 08:25:09] 2025-06-06 06:19:13,815 | INFO     | collected zombie processes
[2025-06-06 08:25:09] 2025-06-06 06:19:13,816 | INFO     | will attempt to kill all subprocesses of pid=14721
[2025-06-06 08:25:09] 2025-06-06 06:19:13,933 | INFO     | process IDs to be killed: [14721] (in reverse order)
[2025-06-06 08:25:09] 2025-06-06 06:19:14,473 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 08:25:09] 2025-06-06 06:19:14,473 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 08:25:09] 2025-06-06 06:19:14,477 | INFO     | did not find any defunct processes belonging to 14721
[2025-06-06 08:25:09] 2025-06-06 06:19:14,480 | INFO     | did not find any defunct processes belonging to 14721
[2025-06-06 08:25:09] 2025-06-06 06:19:14,480 | INFO     | ready for new job
[2025-06-06 08:25:09] 2025-06-06 06:19:14,480 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 08:25:09] 2025-06-06 06:19:14,483 | INFO     | **************************************
[2025-06-06 08:25:09] 2025-06-06 06:19:14,483 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 08:25:09] 2025-06-06 06:19:14,483 | INFO     | **************************************
[2025-06-06 08:25:09] 2025-06-06 06:19:14,483 | INFO     | 
[2025-06-06 08:25:09] 2025-06-06 06:19:14,484 | INFO     | pilot is running in a VM
[2025-06-06 08:25:09] 2025-06-06 06:19:14,484 | INFO     | architecture information:
[2025-06-06 08:25:09] 2025-06-06 06:19:14,485 | INFO     | executing command: cat /etc/os-release
[2025-06-06 08:25:09] 2025-06-06 06:19:14,686 | INFO     | cat /etc/os-release:
[2025-06-06 08:25:09] NAME="CentOS Linux"
[2025-06-06 08:25:09] VERSION="7 (Core)"
[2025-06-06 08:25:09] ID="centos"
[2025-06-06 08:25:09] ID_LIKE="rhel fedora"
[2025-06-06 08:25:09] VERSION_ID="7"
[2025-06-06 08:25:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 08:25:09] ANSI_COLOR="0;31"
[2025-06-06 08:25:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 08:25:09] HOME_URL="https://www.centos.org/"
[2025-06-06 08:25:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 08:25:09] 
[2025-06-06 08:25:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 08:25:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 08:25:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 08:25:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 08:25:09] 
[2025-06-06 08:25:09] 2025-06-06 06:19:14,687 | INFO     | **************************************
[2025-06-06 08:25:09] 2025-06-06 06:19:15,190 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-06-06 08:25:09] 2025-06-06 06:19:15,386 | INFO     | sufficient remaining disk space (469497806848 B)
[2025-06-06 08:25:09] 2025-06-06 06:19:15,387 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 08:25:09] 2025-06-06 06:19:15,387 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 08:25:09] 2025-06-06 06:19:15,387 | INFO     | update_server=False
[2025-06-06 08:25:09] 2025-06-06 06:19:15,387 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 08:25:09] 2025-06-06 06:19:15,388 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 08:25:09] 2025-06-06 06:19:15,391 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 08:25:09] 2025-06-06 06:19:15,395 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-06 08:25:09] 2025-06-06 06:19:15,395 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 08:25:09] 2025-06-06 06:19:15,396 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 08:25:09] 2025-06-06 06:19:15,396 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 08:25:09] 2025-06-06 06:19:15,817 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-06 08:25:09] 2025-06-06 06:19:15,817 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-06 08:25:09] 2025-06-06 06:19:15,817 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 08:25:09] 2025-06-06 06:19:15,818 | INFO     | will abort loop
[2025-06-06 08:25:09] 2025-06-06 06:19:16,006 | INFO     | all payload control threads have been joined
[2025-06-06 08:25:09] 2025-06-06 06:19:16,229 | INFO     | all data control threads have been joined
[2025-06-06 08:25:09] 2025-06-06 06:19:16,393 | INFO     | [job] retrieve thread has finished
[2025-06-06 08:25:09] 2025-06-06 06:19:16,396 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 08:25:09] 2025-06-06 06:19:16,555 | INFO     | [payload] failed_post thread has finished
[2025-06-06 08:25:09] 2025-06-06 06:19:16,649 | INFO     | all job control threads have been joined
[2025-06-06 08:25:09] 2025-06-06 06:19:16,750 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 08:25:09] 2025-06-06 06:19:16,824 | INFO     | [job] job monitor thread has finished
[2025-06-06 08:25:09] 2025-06-06 06:19:16,837 | INFO     | [data] copytool_in thread has finished
[2025-06-06 08:25:09] 2025-06-06 06:19:16,847 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 08:25:09] 2025-06-06 06:19:17,012 | INFO     | [payload] control thread has finished
[2025-06-06 08:25:09] 2025-06-06 06:19:17,064 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 08:25:09] 2025-06-06 06:19:17,235 | INFO     | [data] control thread has finished
[2025-06-06 08:25:09] 2025-06-06 06:19:17,402 | INFO     | [data] copytool_out thread has finished
[2025-06-06 08:25:09] 2025-06-06 06:19:17,460 | INFO     | [job] validate thread has finished
[2025-06-06 08:25:09] 2025-06-06 06:19:17,655 | INFO     | [job] control thread has finished
[2025-06-06 08:25:09] 2025-06-06 06:19:17,693 | INFO     | [payload] validate_post thread has finished
[2025-06-06 08:25:09] 2025-06-06 06:19:17,702 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 08:25:09] 2025-06-06 06:19:18,708 | INFO     | [job] queue monitor thread has finished
[2025-06-06 08:25:09] 2025-06-06 06:19:19,397 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 08:25:09] 2025-06-06 06:19:21,137 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140287346964288)>', '<ExcThread(monitor, started 140286911047424)>']
[2025-06-06 08:25:09] 2025-06-06 06:19:21,432 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 08:25:09] 2025-06-06 06:19:21,432 | INFO     | [monitor] control thread has ended
[2025-06-06 08:25:09] 2025-06-06 06:19:26,163 | INFO     | all workflow threads have been joined
[2025-06-06 08:25:09] 2025-06-06 06:19:26,163 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 08:25:09] 2025-06-06 06:19:26,163 | INFO     | traces error code: 0
[2025-06-06 08:25:09] 2025-06-06 06:19:26,164 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 08:25:09] 2025-06-06 06:19:26,578 [wrapper] ==== pilot stdout END ====
[2025-06-06 08:25:09] 2025-06-06 06:19:26,594 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 08:25:09] 2025-06-06 06:19:26,631 [wrapper] pilotpid: 8102
[2025-06-06 08:25:09] 2025-06-06 06:19:26,650 [wrapper] Pilot exit status: 0
[2025-06-06 08:25:09] 2025-06-06 06:19:26,820 [wrapper] pandaids: 6677548556
[2025-06-06 08:25:09] 2025-06-06 06:19:27,190 [wrapper] cleanup supervisor_pilot  7994 8103
[2025-06-06 08:25:09] 2025-06-06 06:19:27,449 [wrapper] Test setup, not cleaning
[2025-06-06 08:25:09] 2025-06-06 06:19:27,488 [wrapper] apfmon messages muted
[2025-06-06 08:25:09] 2025-06-06 06:19:27,569 [wrapper] ==== wrapper stdout END ====
[2025-06-06 08:25:09] 2025-06-06 06:19:27,724 [wrapper] ==== wrapper stderr END ====
[2025-06-06 08:25:09]  *** Error codes and diagnostics ***
[2025-06-06 08:25:09]     "exeErrorCode": 0,
[2025-06-06 08:25:09]     "exeErrorDiag": "",
[2025-06-06 08:25:09]     "pilotErrorCode": 0,
[2025-06-06 08:25:09]     "pilotErrorDiag": "",
[2025-06-06 08:25:09]  *** Listing of results directory ***
[2025-06-06 08:25:09] total 396216
[2025-06-06 08:25:09] -rw-r--r--. 1 boinc boinc    495897 Jun  3 10:43 pilot3.tar.gz
[2025-06-06 08:25:09] -rw-r--r--. 1 boinc boinc      5111 Jun  3 10:53 queuedata.json
[2025-06-06 08:25:09] -rwx------. 1 boinc boinc     37140 Jun  3 10:56 runpilot2-wrapper.sh
[2025-06-06 08:25:09] -rw-r--r--. 1 boinc boinc       100 Jun  6 04:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 08:25:09] -rwxr-xr-x. 1 boinc boinc      7986 Jun  6 04:18 run_atlas
[2025-06-06 08:25:09] -rw-r--r--. 1 boinc boinc       105 Jun  6 04:18 job.xml
[2025-06-06 08:25:09] -rw-r--r--. 1 boinc boinc      6391 Jun  6 04:18 init_data.xml
[2025-06-06 08:25:09] -rw-r--r--. 2 boinc boinc 216663702 Jun  6 04:18 EVNT.45006593._001053.pool.root.1
[2025-06-06 08:25:09] -rw-r--r--. 2 boinc boinc     15093 Jun  6 04:18 start_atlas.sh
[2025-06-06 08:25:09] drwxrwx--x. 2 boinc boinc        68 Jun  6 04:18 shared
[2025-06-06 08:25:09] -rw-r--r--. 2 boinc boinc    508884 Jun  6 04:18 input.tar.gz
[2025-06-06 08:25:09] -rw-r--r--. 1 boinc boinc         0 Jun  6 04:18 boinc_lockfile
[2025-06-06 08:25:09] -rw-r--r--. 1 boinc boinc      2525 Jun  6 04:30 pandaJob.out
[2025-06-06 08:25:09] -rw-------. 1 boinc boinc    987721 Jun  6 04:31 agis_schedconf.cvmfs.json
[2025-06-06 08:25:09] drwx------. 4 boinc boinc      4096 Jun  6 04:31 pilot3
[2025-06-06 08:25:09] -rw-------. 1 boinc boinc 182078183 Jun  6 08:16 HITS.45006595._026343.pool.root.1
[2025-06-06 08:25:09] -rw-r--r--. 1 boinc boinc       531 Jun  6 08:16 boinc_task_state.xml
[2025-06-06 08:25:09] -rw-------. 1 boinc boinc      1020 Jun  6 08:17 memory_monitor_summary.json
[2025-06-06 08:25:09] -rw-------. 1 boinc boinc   1598969 Jun  6 08:17 agis_ddmendpoints.agis.ALL.json
[2025-06-06 08:25:09] -rw-------. 1 boinc boinc    397649 Jun  6 08:17 log.45006595._026343.job.log.tgz.1
[2025-06-06 08:25:09] -rw-------. 1 boinc boinc        95 Jun  6 08:18 pilot_heartbeat.json
[2025-06-06 08:25:09] -rw-------. 1 boinc boinc      7690 Jun  6 08:19 heartbeat.json
[2025-06-06 08:25:09] -rw-------. 1 boinc boinc      4726 Jun  6 08:19 pilotlog.txt
[2025-06-06 08:25:09] -rw-------. 1 boinc boinc   1183697 Jun  6 08:19 log.45006595._026343.job.log.1
[2025-06-06 08:25:09] -rw-------. 1 boinc boinc       357 Jun  6 08:19 output.list
[2025-06-06 08:25:09] -rw-r--r--. 1 boinc boinc       620 Jun  6 08:19 runtime_log
[2025-06-06 08:25:09] -rw-------. 1 boinc boinc   1597440 Jun  6 08:19 result.tar.gz
[2025-06-06 08:25:09] -rw-------. 1 boinc boinc       657 Jun  6 08:19 vPgNDmgccg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm83iKDmHN8LSn.diag
[2025-06-06 08:25:09] -rw-r--r--. 1 boinc boinc      8673 Jun  6 08:19 runtime_log.err
[2025-06-06 08:25:09] -rw-r--r--. 1 boinc boinc      8192 Jun  6 08:25 boinc_mmap_file
[2025-06-06 08:25:09] -rw-r--r--. 1 boinc boinc        28 Jun  6 08:25 wrapper_checkpoint.txt
[2025-06-06 08:25:09] -rw-r--r--. 1 boinc boinc     20529 Jun  6 08:25 stderr.txt
[2025-06-06 08:25:09] HITS file was successfully produced:
[2025-06-06 08:25:09] -rw-------. 1 boinc boinc 182078183 Jun  6 08:16 shared/HITS.pool.root.1
[2025-06-06 08:25:09]  *** Contents of shared directory: ***
[2025-06-06 08:25:10] total 391476
[2025-06-06 08:25:10] -rw-r--r--. 2 boinc boinc 216663702 Jun  6 04:18 ATLAS.root_0
[2025-06-06 08:25:10] -rw-r--r--. 2 boinc boinc     15093 Jun  6 04:18 start_atlas.sh
[2025-06-06 08:25:10] -rw-r--r--. 2 boinc boinc    508884 Jun  6 04:18 input.tar.gz
[2025-06-06 08:25:10] -rw-------. 1 boinc boinc 182078183 Jun  6 08:16 HITS.pool.root.1
[2025-06-06 08:25:10] -rw-------. 1 boinc boinc   1597440 Jun  6 08:19 result.tar.gz
08:25:11 (22447): run_atlas exited; CPU time 50823.518958
08:25:11 (22447): called boinc_finish(0)

</stderr_txt>
]]>

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