Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:20:44 (3902070): wrapper (7.7.26015): starting
08:20:44 (3902070): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 08:20:44] Arguments: --nthreads 8
[2025-06-05 08:20:44] Threads: 8
[2025-06-05 08:20:44] Checking for CVMFS
[2025-06-05 08:20:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 08:20:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 08:20:44] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 08:20:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 08:20:45] 2.12.6.0 912492 24731 472728 146819 3 164 25566853 40960000 15815 16776704 0 118967487 99.721 85798840 27071 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-05 08:20:45] CVMFS is ok
[2025-06-05 08:20:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 08:20:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 08:20:45] Further information can be found at the LHC@home message board.
[2025-06-05 08:20:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 08:20:45] Checking for apptainer binary...
[2025-06-05 08:20:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 08:20:45] Running /usr/bin/apptainer --version
[2025-06-05 08:20:45] apptainer version 1.4.1-1.el9
[2025-06-05 08:20:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 08:20:45] c7-10-12.aglt2.org
[2025-06-05 08:20:45] apptainer works
[2025-06-05 08:20:46] Set ATHENA_PROC_NUMBER=8
[2025-06-05 08:20:46] Set ATHENA_CORE_NUMBER=8
[2025-06-05 08:20:46] Starting ATLAS job with PandaID=6668863484
[2025-06-05 08:20:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 10:20:04]  *** The last 200 lines of the pilot log: ***
[2025-06-05 10:20:04] 2025-06-05 14:19:45,473 | INFO     | total number of processed events: 400 (read)
[2025-06-05 10:20:04] 2025-06-05 14:19:45,490 | INFO     | executing command: lscpu
[2025-06-05 10:20:04] 2025-06-05 14:19:45,571 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 10:20:04] 2025-06-05 14:19:46,280 | INFO     | monitor loop #526: job 0:6668863484 is in state 'finished'
[2025-06-05 10:20:04] 2025-06-05 14:19:46,280 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 10:20:04] 2025-06-05 14:19:48,783 | INFO     | monitor loop #527: job 0:6668863484 is in state 'finished'
[2025-06-05 10:20:04] 2025-06-05 14:19:48,783 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 10:20:04] 2025-06-05 14:19:49,471 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 10:20:04] 2025-06-05 14:19:49,472 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6668863484/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 10:20:04] 2025-06-05 14:19:49,472 | INFO     | extracted standard info from prmon json
[2025-06-05 10:20:04] 2025-06-05 14:19:49,473 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 10:20:04] 2025-06-05 14:19:49,473 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 10:20:04] 2025-06-05 14:19:49,473 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 10:20:04] 2025-06-05 14:19:49,473 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 10:20:04] 2025-06-05 14:19:49,475 | INFO     | fitting pss+swap vs Time
[2025-06-05 10:20:04] 2025-06-05 14:19:49,475 | INFO     | sum of square deviations: 483971865.0
[2025-06-05 10:20:04] 2025-06-05 14:19:49,476 | INFO     | sum of deviations: -10034360553.999998
[2025-06-05 10:20:04] 2025-06-05 14:19:49,476 | INFO     | mean x: 1749129658.5
[2025-06-05 10:20:04] 2025-06-05 14:19:49,476 | INFO     | mean y: 2258237.120689655
[2025-06-05 10:20:04] 2025-06-05 14:19:49,476 | INFO     | -- intersect: 36267584629.76933
[2025-06-05 10:20:04] 2025-06-05 14:19:49,476 | INFO     | intersect: 36267584629.76933
[2025-06-05 10:20:04] 2025-06-05 14:19:49,476 | INFO     | chi2: 2.6625239103005174
[2025-06-05 10:20:04] 2025-06-05 14:19:49,476 | INFO     | sum of square deviations: 424045160.0
[2025-06-05 10:20:04] 2025-06-05 14:19:49,477 | INFO     | sum of deviations: -2346350116.000002
[2025-06-05 10:20:04] 2025-06-05 14:19:49,477 | INFO     | mean x: 1749129506.0
[2025-06-05 10:20:04] 2025-06-05 14:19:49,477 | INFO     | mean y: 2277228.5225225226
[2025-06-05 10:20:04] 2025-06-05 14:19:49,477 | INFO     | -- intersect: 9680657284.321594
[2025-06-05 10:20:04] 2025-06-05 14:19:49,477 | INFO     | intersect: 9680657284.321594
[2025-06-05 10:20:04] 2025-06-05 14:19:49,477 | INFO     | chi2: 2.0206635183497657
[2025-06-05 10:20:04] 2025-06-05 14:19:49,477 | INFO     | current chi2=2.0206635183497657 (change=24.107216069218524 %)
[2025-06-05 10:20:04] 2025-06-05 14:19:49,477 | INFO     | right removable region: 110
[2025-06-05 10:20:04] 2025-06-05 14:19:49,478 | INFO     | sum of square deviations: 424045160.0
[2025-06-05 10:20:04] 2025-06-05 14:19:49,478 | INFO     | sum of deviations: -28622602695.00003
[2025-06-05 10:20:04] 2025-06-05 14:19:49,478 | INFO     | mean x: 1749129811.0
[2025-06-05 10:20:04] 2025-06-05 14:19:49,478 | INFO     | mean y: 2304841.153153153
[2025-06-05 10:20:04] 2025-06-05 14:19:49,478 | INFO     | -- intersect: 118066729022.37361
[2025-06-05 10:20:04] 2025-06-05 14:19:49,478 | INFO     | intersect: 118066729022.37361
[2025-06-05 10:20:04] 2025-06-05 14:19:49,479 | INFO     | chi2: 0.9058295911211318
[2025-06-05 10:20:04] 2025-06-05 14:19:49,479 | INFO     | current chi2=0.9058295911211318 (change=65.97853684555676 %)
[2025-06-05 10:20:04] 2025-06-05 14:19:49,479 | INFO     | sum of square deviations: 369281342.5
[2025-06-05 10:20:04] 2025-06-05 14:19:49,479 | INFO     | sum of deviations: -27855766022.0
[2025-06-05 10:20:04] 2025-06-05 14:19:49,479 | INFO     | mean x: 1749129963.5
[2025-06-05 10:20:04] 2025-06-05 14:19:49,479 | INFO     | mean y: 2302535.7924528304
[2025-06-05 10:20:04] 2025-06-05 14:19:49,479 | INFO     | -- intersect: 131943317143.98486
[2025-06-05 10:20:04] 2025-06-05 14:19:49,479 | INFO     | intersect: 131943317143.98486
[2025-06-05 10:20:04] 2025-06-05 14:19:49,480 | INFO     | chi2: 0.85718318631455
[2025-06-05 10:20:04] 2025-06-05 14:19:49,480 | INFO     | current chi2=0.85718318631455 (change=5.3703704629888325 %)
[2025-06-05 10:20:04] 2025-06-05 14:19:49,480 | INFO     | left removable region: 20
[2025-06-05 10:20:04] 2025-06-05 14:19:49,480 | INFO     | sum of square deviations: 226022842.5
[2025-06-05 10:20:04] 2025-06-05 14:19:49,480 | INFO     | sum of deviations: -15550930323.999998
[2025-06-05 10:20:04] 2025-06-05 14:19:49,480 | INFO     | mean x: 1749130085.5
[2025-06-05 10:20:04] 2025-06-05 14:19:49,480 | INFO     | mean y: 2310486.311111111
[2025-06-05 10:20:04] 2025-06-05 14:19:49,480 | INFO     | -- intersect: 120346784462.3105
[2025-06-05 10:20:04] 2025-06-05 14:19:49,480 | INFO     | intersect: 120346784462.3105
[2025-06-05 10:20:04] 2025-06-05 14:19:49,481 | INFO     | chi2: 0.16689617952989205
[2025-06-05 10:20:04] 2025-06-05 14:19:49,481 | INFO     | -- intersect: 120346784462.3105
[2025-06-05 10:20:04] 2025-06-05 14:19:49,481 | INFO     | current memory leak: -68.80 B/s (using 90 data points, chi2=0.17)
[2025-06-05 10:20:04] 2025-06-05 14:19:49,481 | INFO     | ..............................
[2025-06-05 10:20:04] 2025-06-05 14:19:49,481 | INFO     | . Timing measurements:
[2025-06-05 10:20:04] 2025-06-05 14:19:49,481 | INFO     | . get job = 0 s
[2025-06-05 10:20:04] 2025-06-05 14:19:49,481 | INFO     | . initial setup = 3 s
[2025-06-05 10:20:04] 2025-06-05 14:19:49,481 | INFO     | . payload setup = 20 s
[2025-06-05 10:20:04] 2025-06-05 14:19:49,481 | INFO     | . stage-in = 0 s
[2025-06-05 10:20:04] 2025-06-05 14:19:49,481 | INFO     | . payload execution = 7044 s
[2025-06-05 10:20:04] 2025-06-05 14:19:49,482 | INFO     | . stage-out = 0 s
[2025-06-05 10:20:04] 2025-06-05 14:19:49,482 | INFO     | . log creation = 0 s
[2025-06-05 10:20:04] 2025-06-05 14:19:49,482 | INFO     | ..............................
[2025-06-05 10:20:04] 2025-06-05 14:19:49,558 | INFO     | 
[2025-06-05 10:20:04] 2025-06-05 14:19:49,559 | INFO     | job summary report
[2025-06-05 10:20:04] 2025-06-05 14:19:49,559 | INFO     | --------------------------------------------------
[2025-06-05 10:20:04] 2025-06-05 14:19:49,559 | INFO     | PanDA job id: 6668863484
[2025-06-05 10:20:04] 2025-06-05 14:19:49,559 | INFO     | task id: 44871837
[2025-06-05 10:20:04] 2025-06-05 14:19:49,559 | INFO     | errors: (none)
[2025-06-05 10:20:04] 2025-06-05 14:19:49,559 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 10:20:04] 2025-06-05 14:19:49,559 | INFO     | pilot state: finished 
[2025-06-05 10:20:04] 2025-06-05 14:19:49,559 | INFO     | transexitcode: 0
[2025-06-05 10:20:04] 2025-06-05 14:19:49,559 | INFO     | exeerrorcode: 0
[2025-06-05 10:20:04] 2025-06-05 14:19:49,559 | INFO     | exeerrordiag: 
[2025-06-05 10:20:04] 2025-06-05 14:19:49,560 | INFO     | exitcode: 0
[2025-06-05 10:20:04] 2025-06-05 14:19:49,560 | INFO     | exitmsg: OK
[2025-06-05 10:20:04] 2025-06-05 14:19:49,560 | INFO     | cpuconsumptiontime: 39706 s
[2025-06-05 10:20:04] 2025-06-05 14:19:49,560 | INFO     | nevents: 400
[2025-06-05 10:20:04] 2025-06-05 14:19:49,560 | INFO     | neventsw: 0
[2025-06-05 10:20:04] 2025-06-05 14:19:49,560 | INFO     | pid: 3917470
[2025-06-05 10:20:04] 2025-06-05 14:19:49,560 | INFO     | pgrp: 3917470
[2025-06-05 10:20:04] 2025-06-05 14:19:49,560 | INFO     | corecount: 8
[2025-06-05 10:20:04] 2025-06-05 14:19:49,560 | INFO     | event service: False
[2025-06-05 10:20:04] 2025-06-05 14:19:49,560 | INFO     | sizes: {0: 2397220, 1: 2397419, 11: 2397419, 14: 2397653, 22: 2397681, 7068: 2424833, 7070: 2433774, 7072: 2433830, 7078: 2434000}
[2025-06-05 10:20:04] 2025-06-05 14:19:49,560 | INFO     | --------------------------------------------------
[2025-06-05 10:20:04] 2025-06-05 14:19:49,560 | INFO     | 
[2025-06-05 10:20:04] 2025-06-05 14:19:49,560 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-05 10:20:04] 2025-06-05 14:19:49,582 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 10:20:04] 2025-06-05 14:19:49,582 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 10:20:04] 2025-06-05 14:19:49,583 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 10:20:04] 2025-06-05 14:19:49,583 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 10:20:04] 2025-06-05 14:19:49,583 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 10:20:04] 2025-06-05 14:19:49,583 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 10:20:04] 2025-06-05 14:19:49,583 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 10:20:04] 2025-06-05 14:19:49,583 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 10:20:04] 2025-06-05 14:19:49,583 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 10:20:04] 2025-06-05 14:19:49,583 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 10:20:04] 2025-06-05 14:19:49,583 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 10:20:04] 2025-06-05 14:19:49,583 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 10:20:04] 2025-06-05 14:19:49,583 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 10:20:04] 2025-06-05 14:19:49,583 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 10:20:04] 2025-06-05 14:19:49,583 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 10:20:04] 2025-06-05 14:19:49,583 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 10:20:04] 2025-06-05 14:19:49,583 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 10:20:04] 2025-06-05 14:19:49,583 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 10:20:04] 2025-06-05 14:19:49,583 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 10:20:04] 2025-06-05 14:19:49,583 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 10:20:04] 2025-06-05 14:19:49,583 | INFO     | job 6668863484 has completed (purged errors)
[2025-06-05 10:20:04] 2025-06-05 14:19:49,584 | INFO     | overall cleanup function is called
[2025-06-05 10:20:04] 2025-06-05 14:19:50,592 | INFO     | --- collectZombieJob: --- 10, [3917470]
[2025-06-05 10:20:04] 2025-06-05 14:19:50,592 | INFO     | zombie collector waiting for pid 3917470
[2025-06-05 10:20:04] 2025-06-05 14:19:50,592 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 10:20:04] 2025-06-05 14:19:50,592 | INFO     | collected zombie processes
[2025-06-05 10:20:04] 2025-06-05 14:19:50,592 | INFO     | will attempt to kill all subprocesses of pid=3917470
[2025-06-05 10:20:04] 2025-06-05 14:19:50,943 | INFO     | process IDs to be killed: [3917470] (in reverse order)
[2025-06-05 10:20:04] 2025-06-05 14:19:51,058 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 10:20:04] 2025-06-05 14:19:51,059 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 10:20:04] 2025-06-05 14:19:51,074 | INFO     | did not find any defunct processes belonging to 3917470
[2025-06-05 10:20:04] 2025-06-05 14:19:51,089 | INFO     | did not find any defunct processes belonging to 3917470
[2025-06-05 10:20:04] 2025-06-05 14:19:51,090 | INFO     | ready for new job
[2025-06-05 10:20:04] 2025-06-05 14:19:51,090 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 10:20:04] 2025-06-05 14:19:51,091 | INFO     | **************************************
[2025-06-05 10:20:04] 2025-06-05 14:19:51,091 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 10:20:04] 2025-06-05 14:19:51,091 | INFO     | **************************************
[2025-06-05 10:20:04] 2025-06-05 14:19:51,091 | INFO     | 
[2025-06-05 10:20:04] 2025-06-05 14:19:51,108 | INFO     | architecture information:
[2025-06-05 10:20:04] 2025-06-05 14:19:51,108 | INFO     | executing command: cat /etc/os-release
[2025-06-05 10:20:04] 2025-06-05 14:19:51,121 | INFO     | cat /etc/os-release:
[2025-06-05 10:20:04] NAME="CentOS Linux"
[2025-06-05 10:20:04] VERSION="7 (Core)"
[2025-06-05 10:20:04] ID="centos"
[2025-06-05 10:20:04] ID_LIKE="rhel fedora"
[2025-06-05 10:20:04] VERSION_ID="7"
[2025-06-05 10:20:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 10:20:04] ANSI_COLOR="0;31"
[2025-06-05 10:20:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 10:20:04] HOME_URL="https://www.centos.org/"
[2025-06-05 10:20:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 10:20:04] 
[2025-06-05 10:20:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 10:20:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 10:20:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 10:20:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 10:20:04] 
[2025-06-05 10:20:04] 2025-06-05 14:19:51,121 | INFO     | **************************************
[2025-06-05 10:20:04] 2025-06-05 14:19:51,623 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-05 10:20:04] 2025-06-05 14:19:51,639 | INFO     | sufficient remaining disk space (86473965568 B)
[2025-06-05 10:20:04] 2025-06-05 14:19:51,639 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 10:20:04] 2025-06-05 14:19:51,639 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 10:20:04] 2025-06-05 14:19:51,639 | INFO     | update_server=False
[2025-06-05 10:20:04] 2025-06-05 14:19:51,639 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 10:20:04] 2025-06-05 14:19:51,639 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 10:20:04] 2025-06-05 14:19:51,639 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 10:20:04] 2025-06-05 14:19:51,640 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 10:20:04] 2025-06-05 14:19:51,640 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 10:20:04] 2025-06-05 14:19:52,280 | INFO     | all data control threads have been joined
[2025-06-05 10:20:04] 2025-06-05 14:19:52,292 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 10:20:04] 2025-06-05 14:19:52,292 | INFO     | aborting loop
[2025-06-05 10:20:04] 2025-06-05 14:19:52,535 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 10:20:04] 2025-06-05 14:19:52,644 | INFO     | [job] retrieve thread has finished
[2025-06-05 10:20:04] 2025-06-05 14:19:52,700 | INFO     | all payload control threads have been joined
[2025-06-05 10:20:04] 2025-06-05 14:19:52,911 | INFO     | [payload] failed_post thread has finished
[2025-06-05 10:20:04] 2025-06-05 14:19:52,983 | INFO     | all job control threads have been joined
[2025-06-05 10:20:04] 2025-06-05 14:19:53,014 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 10:20:04] 2025-06-05 14:19:53,286 | INFO     | [data] control thread has finished
[2025-06-05 10:20:04] 2025-06-05 14:19:53,298 | INFO     | [job] job monitor thread has finished
[2025-06-05 10:20:04] 2025-06-05 14:19:53,333 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 10:20:04] 2025-06-05 14:19:53,519 | INFO     | [job] validate thread has finished
[2025-06-05 10:20:04] 2025-06-05 14:19:53,676 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 10:20:04] 2025-06-05 14:19:53,705 | INFO     | [payload] control thread has finished
[2025-06-05 10:20:04] 2025-06-05 14:19:53,874 | INFO     | [data] copytool_in thread has finished
[2025-06-05 10:20:04] 2025-06-05 14:19:53,883 | INFO     | [payload] validate_post thread has finished
[2025-06-05 10:20:04] 2025-06-05 14:19:53,906 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 10:20:04] 2025-06-05 14:19:53,988 | INFO     | [job] control thread has finished
[2025-06-05 10:20:04] 2025-06-05 14:19:54,539 | INFO     | [data] copytool_out thread has finished
[2025-06-05 10:20:04] 2025-06-05 14:19:54,545 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 10:20:04] 2025-06-05 14:19:54,569 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 10:20:04] 2025-06-05 14:19:55,574 | INFO     | [job] queue monitor thread has finished
[2025-06-05 10:20:04] 2025-06-05 14:19:58,552 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 10:20:04] 2025-06-05 14:19:59,297 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140338838951744)>', '<ExcThread(monitor, started 140338006038272)>']
[2025-06-05 10:20:04] 2025-06-05 14:19:59,676 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 10:20:04] 2025-06-05 14:19:59,676 | INFO     | [monitor] control thread has ended
[2025-06-05 10:20:04] 2025-06-05 14:20:04,322 | INFO     | all workflow threads have been joined
[2025-06-05 10:20:04] 2025-06-05 14:20:04,322 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 10:20:04] 2025-06-05 14:20:04,322 | INFO     | traces error code: 0
[2025-06-05 10:20:04] 2025-06-05 14:20:04,322 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 10:20:04] 2025-06-05 14:20:04,462 [wrapper] ==== pilot stdout END ====
[2025-06-05 10:20:04] 2025-06-05 14:20:04,466 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 10:20:04] 2025-06-05 14:20:04,469 [wrapper] pilotpid: 3906312
[2025-06-05 10:20:04] 2025-06-05 14:20:04,472 [wrapper] Pilot exit status: 0
[2025-06-05 10:20:04] 2025-06-05 14:20:04,481 [wrapper] pandaids: 6668863484
[2025-06-05 10:20:04] 2025-06-05 14:20:04,573 [wrapper] cleanup supervisor_pilot  477693 3906313
[2025-06-05 10:20:04] 2025-06-05 14:20:04,576 [wrapper] Test setup, not cleaning
[2025-06-05 10:20:04] 2025-06-05 14:20:04,580 [wrapper] apfmon messages muted
[2025-06-05 10:20:04] 2025-06-05 14:20:04,583 [wrapper] ==== wrapper stdout END ====
[2025-06-05 10:20:04] 2025-06-05 14:20:04,586 [wrapper] ==== wrapper stderr END ====
[2025-06-05 10:20:04]  *** Error codes and diagnostics ***
[2025-06-05 10:20:04]     "exeErrorCode": 0,
[2025-06-05 10:20:04]     "exeErrorDiag": "",
[2025-06-05 10:20:04]     "pilotErrorCode": 0,
[2025-06-05 10:20:04]     "pilotErrorDiag": "",
[2025-06-05 10:20:04]  *** Listing of results directory ***
[2025-06-05 10:20:04] total 427016
[2025-06-05 10:20:04] -rw-r--r--. 1 boincer umatlas    495897 May 28 15:50 pilot3.tar.gz
[2025-06-05 10:20:04] -rwx------. 1 boincer umatlas     37140 May 28 16:09 runpilot2-wrapper.sh
[2025-06-05 10:20:04] -rw-r--r--. 1 boincer umatlas      5111 May 28 16:09 queuedata.json
[2025-06-05 10:20:04] -rw-r--r--. 1 boincer umatlas       100 Jun  5 08:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 10:20:04] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  5 08:20 run_atlas
[2025-06-05 10:20:04] -rw-r--r--. 1 boincer umatlas       105 Jun  5 08:20 job.xml
[2025-06-05 10:20:04] -rw-r--r--. 2 boincer umatlas 224615072 Jun  5 08:20 EVNT.44871834._003497.pool.root.1
[2025-06-05 10:20:04] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 08:20 start_atlas.sh
[2025-06-05 10:20:04] drwxrwx--x. 2 boincer umatlas      4096 Jun  5 08:20 shared
[2025-06-05 10:20:04] -rw-r--r--. 2 boincer umatlas    508874 Jun  5 08:20 input.tar.gz
[2025-06-05 10:20:04] -rw-r--r--. 1 boincer umatlas         0 Jun  5 08:20 boinc_lockfile
[2025-06-05 10:20:04] -rw-r--r--. 1 boincer umatlas      2558 Jun  5 08:20 pandaJob.out
[2025-06-05 10:20:04] -rw-------. 1 boincer umatlas    983210 Jun  5 08:21 agis_schedconf.cvmfs.json
[2025-06-05 10:20:04] -rw-------. 1 boincer umatlas   1598969 Jun  5 08:21 agis_ddmendpoints.agis.ALL.json
[2025-06-05 10:20:04] drwx------. 4 boincer umatlas      4096 Jun  5 08:21 pilot3
[2025-06-05 10:20:04] -rw-------. 1 boincer umatlas 206788242 Jun  5 10:19 HITS.44871837._089887.pool.root.1
[2025-06-05 10:20:04] -rw-r--r--. 1 boincer umatlas       529 Jun  5 10:19 boinc_task_state.xml
[2025-06-05 10:20:04] -rw-------. 1 boincer umatlas      1033 Jun  5 10:19 memory_monitor_summary.json
[2025-06-05 10:20:04] -rw-------. 1 boincer umatlas    341933 Jun  5 10:19 log.44871837._089887.job.log.tgz.1
[2025-06-05 10:20:04] -rw-------. 1 boincer umatlas      7694 Jun  5 10:19 heartbeat.json
[2025-06-05 10:20:04] -rw-------. 1 boincer umatlas        95 Jun  5 10:19 pilot_heartbeat.json
[2025-06-05 10:20:04] -rw-r--r--. 1 boincer umatlas      6897 Jun  5 10:20 init_data.xml
[2025-06-05 10:20:04] -rw-r--r--. 1 boincer umatlas      8192 Jun  5 10:20 boinc_mmap_file
[2025-06-05 10:20:04] -rw-r--r--. 1 boincer umatlas        27 Jun  5 10:20 wrapper_checkpoint.txt
[2025-06-05 10:20:04] -rw-------. 1 boincer umatlas      4476 Jun  5 10:20 pilotlog.txt
[2025-06-05 10:20:04] -rw-------. 1 boincer umatlas    669793 Jun  5 10:20 log.44871837._089887.job.log.1
[2025-06-05 10:20:04] -rw-------. 1 boincer umatlas       357 Jun  5 10:20 output.list
[2025-06-05 10:20:04] -rw-r--r--. 1 boincer umatlas       620 Jun  5 10:20 runtime_log
[2025-06-05 10:20:04] -rw-------. 1 boincer umatlas   1034240 Jun  5 10:20 result.tar.gz
[2025-06-05 10:20:04] -rw-r--r--. 1 boincer umatlas      8659 Jun  5 10:20 runtime_log.err
[2025-06-05 10:20:04] -rw-------. 1 boincer umatlas       653 Jun  5 10:20 HIzNDmJGce7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm60cKDmGUGSYo.diag
[2025-06-05 10:20:04] -rw-r--r--. 1 boincer umatlas     21155 Jun  5 10:20 stderr.txt
[2025-06-05 10:20:04] HITS file was successfully produced:
[2025-06-05 10:20:04] -rw-------. 1 boincer umatlas 206788242 Jun  5 10:19 shared/HITS.pool.root.1
[2025-06-05 10:20:04]  *** Contents of shared directory: ***
[2025-06-05 10:20:04] total 422832
[2025-06-05 10:20:04] -rw-r--r--. 2 boincer umatlas 224615072 Jun  5 08:20 ATLAS.root_0
[2025-06-05 10:20:04] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 08:20 start_atlas.sh
[2025-06-05 10:20:04] -rw-r--r--. 2 boincer umatlas    508874 Jun  5 08:20 input.tar.gz
[2025-06-05 10:20:04] -rw-------. 1 boincer umatlas 206788242 Jun  5 10:19 HITS.pool.root.1
[2025-06-05 10:20:04] -rw-------. 1 boincer umatlas   1034240 Jun  5 10:20 result.tar.gz
10:20:05 (3902070): run_atlas exited; CPU time 39763.057976
10:20:05 (3902070): called boinc_finish(0)

</stderr_txt>
]]>

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