Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-05 10:04:17 (12768): Detected: vboxwrapper 26206
2025-06-05 10:04:17 (12768): Detected: BOINC client v8.0.2
2025-06-05 10:04:17 (12768): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-06-05 10:04:18 (12768): Successfully copied 'init_data.xml' to the shared directory.
2025-06-05 10:04:18 (12768): Create VM. (boinc_8db87e854bcbbaf7, slot#25)
2025-06-05 10:04:20 (12768): Setting Memory Size for VM. (4800MB)
2025-06-05 10:04:31 (12768): Setting CPU Count for VM. (8)
2025-06-05 10:04:31 (12768): Setting Chipset Options for VM.
2025-06-05 10:04:35 (12768): Setting Graphics Controller Options for VM.
2025-06-05 10:04:36 (12768): Setting Boot Options for VM.
2025-06-05 10:04:37 (12768): Setting Network Configuration for NAT.
2025-06-05 10:04:38 (12768): Enabling VM Network Access.
2025-06-05 10:04:39 (12768): Disabling USB Support for VM.
2025-06-05 10:04:40 (12768): Disabling COM Port Support for VM.
2025-06-05 10:04:41 (12768): Disabling LPT Port Support for VM.
2025-06-05 10:04:42 (12768): Disabling Audio Support for VM.
2025-06-05 10:04:43 (12768): Disabling Clipboard Support for VM.
2025-06-05 10:04:45 (12768): Disabling Drag and Drop Support for VM.
2025-06-05 10:04:45 (12768): Adding storage controller(s) to VM.
2025-06-05 10:04:45 (12768): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-05 10:04:48 (12768): Adding VirtualBox Guest Additions to VM.
2025-06-05 10:04:49 (12768): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-05 10:04:49 (12768): forwarding host port 64929 to guest port 80
2025-06-05 10:04:49 (12768): Enabling remote desktop for VM.
2025-06-05 10:04:49 (12768): Required extension pack not installed, remote desktop not enabled.
2025-06-05 10:04:49 (12768): Enabling shared directory for VM.
2025-06-05 10:04:50 (12768): Starting VM using VBoxManage interface. (boinc_8db87e854bcbbaf7, slot#25)
2025-06-05 10:04:55 (12768): Successfully started VM. (PID = '3516')
2025-06-05 10:04:55 (12768): Reporting VM Process ID to BOINC.
2025-06-05 10:04:55 (12768): Guest Log: BIOS: VirtualBox 7.0.6
2025-06-05 10:04:55 (12768): Guest Log: CPUID EDX: 0x178bfbff
2025-06-05 10:04:55 (12768): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-05 10:04:55 (12768): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-05 10:04:55 (12768): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-05 10:04:55 (12768): Detected: Web Application Enabled (http://localhost:64929)
2025-06-05 10:04:56 (12768): VM state change detected. (old = 'running', new = 'paused')
2025-06-05 10:05:10 (12768): Preference change detected
2025-06-05 10:05:10 (12768): Setting CPU throttle for VM. (100%)
2025-06-05 10:05:10 (12768): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-05 10:05:11 (12768): VM state change detected. (old = 'paused', new = 'running')
2025-06-05 10:05:12 (12768): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-05 10:05:12 (12768): Guest Log: BIOS: Booting from Hard Disk...
2025-06-05 10:06:10 (12768): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-05 10:06:10 (12768): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-05 10:06:10 (12768): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-05 10:06:10 (12768): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-05 10:06:10 (12768): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-05 10:06:10 (12768): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-05 10:06:10 (12768): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-05 10:06:10 (12768): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-05 10:06:10 (12768): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-05 10:06:10 (12768): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-05 10:06:10 (12768): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-05 10:06:10 (12768): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-05 10:06:10 (12768): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-05 10:06:10 (12768): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-05 10:06:10 (12768): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-05 10:06:10 (12768): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-05 10:06:10 (12768): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-05 10:06:10 (12768): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-05 10:06:10 (12768): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-05 10:06:10 (12768): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-05 10:06:10 (12768): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-05 10:06:10 (12768): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-05 10:06:10 (12768): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-05 10:06:10 (12768): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-05 10:06:10 (12768): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-05 10:06:10 (12768): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-05 10:06:10 (12768): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-05 10:06:10 (12768): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-05 10:06:10 (12768): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-05 10:06:10 (12768): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-05 10:06:10 (12768): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-05 10:06:10 (12768): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-05 10:07:41 (12768): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-05 10:07:41 (12768): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-05 10:13:56 (12768): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-05 10:13:56 (12768): Guest Log: 00:00:00.000673 main     Log opened 2025-06-05T10:13:40.454464000Z
2025-06-05 10:13:56 (12768): Guest Log: 00:00:00.000912 main     OS Product: Linux
2025-06-05 10:13:56 (12768): Guest Log: 00:00:00.000980 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-05 10:13:56 (12768): Guest Log: 00:00:00.001037 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-05 10:13:56 (12768): Guest Log: 00:00:00.001097 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-05 10:13:56 (12768): Guest Log: 00:00:00.001098 main     Process ID: 1405
2025-06-05 10:13:56 (12768): Guest Log: 00:00:00.001099 main     Package type: LINUX_64BITS_GENERIC
2025-06-05 10:13:56 (12768): Guest Log: 00:00:00.005116 main     5.2.32 r132073 started. Verbose level = 0
2025-06-05 10:13:59 (12768): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-05 10:13:59 (12768): Guest Log: [INFO] Mounting shared directory
2025-06-05 10:14:00 (12768): Guest Log: [INFO] Checking for init_data.xml
2025-06-05 10:14:06 (12768): Guest Log: 00:00:10.029152 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 426 133 445 000ns (GuestNow=1 749 132 846 596 133 000 ns GuestLast=1 749 118 420 462 688 000 ns fSetTimeLastLoop=true )
2025-06-05 10:14:15 (12768): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-05 10:14:15 (12768): Guest Log: [INFO] Detected branch: prod
2025-06-05 10:14:16 (12768): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-05 10:14:16 (12768): Guest Log: Copying input files
2025-06-05 10:14:19 (12768): Guest Log: Copied input files into RunAtlas.
2025-06-05 10:14:19 (12768): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-05 10:14:19 (12768): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-05 10:14:19 (12768): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-05 10:14:19 (12768): Guest Log: Further information can be found at the LHC@home message board.
2025-06-05 10:14:44 (12768): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-05 10:14:46 (12768): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-05 10:14:46 (12768): Guest Log: 2.6.3.0 1696 0 30188 146822 3 1 3117617 4096000 0 65024 0 0 n/a 1 1 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-06-05 10:15:13 (12768): Guest Log: copied the webapp to /var/www
2025-06-05 10:15:13 (12768): Guest Log: ATHENA_PROC_NUMBER=8
2025-06-05 10:15:13 (12768): Guest Log: ATHENA_CORE_NUMBER=8
2025-06-05 10:15:15 (12768): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-05 10:15:15 (12768): Guest Log:  *** Starting ATLAS job. (PandaID=6667731264 taskID=44871837) ***
2025-06-05 11:45:15 (12768): Status Report: Elapsed Time: '6000.000000'
2025-06-05 11:45:15 (12768): Status Report: CPU Time: '33062.453125'
2025-06-05 12:51:16 (12768): Guest Log:  *** Job finished ***
2025-06-05 12:51:16 (12768): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-05 12:51:16 (12768): Guest Log: 2025-06-05 16:51:05,066 | INFO     | [payload] failed_post thread has finished
2025-06-05 12:51:16 (12768): Guest Log: 2025-06-05 16:51:05,112 | INFO     | [payload] execute_payloads thread has finished
2025-06-05 12:51:16 (12768): Guest Log: 2025-06-05 16:51:08,205 | INFO     | [data] queue_monitor thread has finished
2025-06-05 12:51:16 (12768): Guest Log: 2025-06-05 16:51:08,207 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139898163464000)>', '<ExcThread(monitor, started 139897193088768)>']
2025-06-05 12:51:16 (12768): Guest Log: 2025-06-05 16:51:08,403 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-05 12:51:16 (12768): Guest Log: 2025-06-05 16:51:08,404 | INFO     | [monitor] control thread has ended
2025-06-05 12:51:16 (12768): Guest Log: 2025-06-05 16:51:13,220 | INFO     | all workflow threads have been joined
2025-06-05 12:51:16 (12768): Guest Log: 2025-06-05 16:51:13,220 | INFO     | end of generic workflow (traces error code: 0)
2025-06-05 12:51:16 (12768): Guest Log: 2025-06-05 16:51:13,220 | INFO     | traces error code: 0
2025-06-05 12:51:16 (12768): Guest Log: 2025-06-05 16:51:13,220 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-05 12:51:16 (12768): Guest Log: 2025-06-05 16:51:13,669 [wrapper] ==== pilot stdout END ====
2025-06-05 12:51:16 (12768): Guest Log: 2025-06-05 16:51:13,685 [wrapper] ==== wrapper stdout RESUME ====
2025-06-05 12:51:16 (12768): Guest Log: 2025-06-05 16:51:13,693 [wrapper] pilotpid: 6087
2025-06-05 12:51:16 (12768): Guest Log: 2025-06-05 16:51:13,702 [wrapper] Pilot exit status: 0
2025-06-05 12:51:16 (12768): Guest Log: 2025-06-05 16:51:13,864 [wrapper] pandaids: 6667731264
2025-06-05 12:51:16 (12768): Guest Log: 2025-06-05 16:51:13,933 [wrapper] cleanup supervisor_pilot  8245 6088
2025-06-05 12:51:16 (12768): Guest Log: 2025-06-05 16:51:13,946 [wrapper] Test setup, not cleaning
2025-06-05 12:51:16 (12768): Guest Log: 2025-06-05 16:51:13,959 [wrapper] apfmon messages muted
2025-06-05 12:51:16 (12768): Guest Log: 2025-06-05 16:51:13,970 [wrapper] ==== wrapper stdout END ====
2025-06-05 12:51:16 (12768): Guest Log: 2025-06-05 16:51:13,979 [wrapper] ==== wrapper stderr END ====
2025-06-05 12:51:16 (12768): Guest Log:  *** Error codes and diagnostics ***
2025-06-05 12:51:16 (12768): Guest Log:     "exeErrorCode": 0,
2025-06-05 12:51:16 (12768): Guest Log:     "exeErrorDiag": "",
2025-06-05 12:51:16 (12768): Guest Log:     "pilotErrorCode": 0,
2025-06-05 12:51:16 (12768): Guest Log:     "pilotErrorDiag": "",
2025-06-05 12:51:16 (12768): Guest Log:  *** Listing of results directory ***
2025-06-05 12:51:16 (12768): Guest Log: total 204160
2025-06-05 12:51:16 (12768): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 27 23:30 pilot3.tar.gz
2025-06-05 12:51:16 (12768): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 27 23:50 queuedata.json
2025-06-05 12:51:16 (12768): Guest Log: -rwx------. 1 atlas atlas     37140 May 27 23:51 runpilot2-wrapper.sh
2025-06-05 12:51:16 (12768): Guest Log: -rwxr-xr-x. 1 atlas atlas     11925 Jun  5 14:14 init_data.xml
2025-06-05 12:51:16 (12768): Guest Log: -rwxr-xr-x. 1 atlas atlas    508880 Jun  5 14:14 input.tar.gz
2025-06-05 12:51:16 (12768): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  5 14:14 start_atlas.sh
2025-06-05 12:51:16 (12768): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  5 14:14 EVNT.44871834._002949.pool.root.1 -> /data/./ATLAS.root_0
2025-06-05 12:51:16 (12768): Guest Log: -rw-r--r--. 1 atlas atlas      2559 Jun  5 14:15 pandaJob.out
2025-06-05 12:51:16 (12768): Guest Log: -rw-------. 1 atlas atlas    983210 Jun  5 14:17 agis_schedconf.cvmfs.json
2025-06-05 12:51:16 (12768): Guest Log: -rw-------. 1 atlas atlas   1598969 Jun  5 14:17 agis_ddmendpoints.agis.ALL.json
2025-06-05 12:51:16 (12768): Guest Log: drwx------. 4 atlas atlas      4096 Jun  5 14:17 pilot3
2025-06-05 12:51:16 (12768): Guest Log: -rw-------. 1 atlas atlas 203096739 Jun  5 16:49 HITS.44871837._075275.pool.root.1
2025-06-05 12:51:16 (12768): Guest Log: -rw-------. 1 atlas atlas        95 Jun  5 16:50 pilot_heartbeat.json
2025-06-05 12:51:16 (12768): Guest Log: -rw-------. 1 atlas atlas      1028 Jun  5 16:50 memory_monitor_summary.json
2025-06-05 12:51:16 (12768): Guest Log: -rw-------. 1 atlas atlas    338216 Jun  5 16:50 log.44871837._075275.job.log.tgz.1
2025-06-05 12:51:16 (12768): Guest Log: -rw-------. 1 atlas atlas      7719 Jun  5 16:51 heartbeat.json
2025-06-05 12:51:16 (12768): Guest Log: -rw-------. 1 atlas atlas      4413 Jun  5 16:51 pilotlog.txt
2025-06-05 12:51:16 (12768): Guest Log: -rw-------. 1 atlas atlas    763595 Jun  5 16:51 log.44871837._075275.job.log.1
2025-06-05 12:51:16 (12768): Guest Log: -rw-------. 1 atlas atlas       357 Jun  5 16:51 output.list
2025-06-05 12:51:16 (12768): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  5 16:51 runtime_log
2025-06-05 12:51:16 (12768): Guest Log: -rw-------. 1 atlas atlas   1116160 Jun  5 16:51 result.tar.gz
2025-06-05 12:51:16 (12768): Guest Log: -rw-r--r--. 1 atlas atlas      8601 Jun  5 16:51 runtime_log.err
2025-06-05 12:51:16 (12768): Guest Log: -rw-------. 1 atlas atlas       657 Jun  5 16:51 hEXMDmtFJe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm6haKDm0a1xim.diag
2025-06-05 12:51:17 (12768): Guest Log: Looking for outputfile HITS.44871837._075275.pool.root.1
2025-06-05 12:51:17 (12768): Guest Log: HITS file was successfully produced
2025-06-05 12:51:17 (12768): Guest Log: -rw-------. 1 atlas atlas 203096739 Jun  5 16:49 /home/atlas/RunAtlas/HITS.44871837._075275.pool.root.1
2025-06-05 12:51:19 (12768): Guest Log: Successfully finished the ATLAS job!
2025-06-05 12:51:19 (12768): Guest Log: Copying the results back to the shared directory!
2025-06-05 12:51:20 (12768): Guest Log:  *** Contents of shared directory: ***
2025-06-05 12:51:20 (12768): Guest Log: total 420340
2025-06-05 12:51:20 (12768): Guest Log: -rwxrwxrwx. 1 root root 225668947 Jun  5 14:04 ATLAS.root_0
2025-06-05 12:51:20 (12768): Guest Log: -rwxrwxrwx. 1 root root 203096739 Jun  5 16:51 HITS.pool.root.1
2025-06-05 12:51:20 (12768): Guest Log: -rwxrwxrwx. 1 root root     11925 Jun  5 14:04 init_data.xml
2025-06-05 12:51:20 (12768): Guest Log: -rwxrwxrwx. 1 root root    508880 Jun  5 12:06 input.tar.gz
2025-06-05 12:51:20 (12768): Guest Log: -rwxrwxrwx. 1 root root   1116160 Jun  5 16:51 result.tar.gz
2025-06-05 12:51:20 (12768): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  5 12:06 start_atlas.sh
2025-06-05 12:51:20 (12768): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-05 12:51:20 (12768): VM Completion File Detected.
2025-06-05 12:51:20 (12768): Powering off VM.
2025-06-05 12:51:22 (12768): Successfully stopped VM.
2025-06-05 12:51:22 (12768): Deregistering VM. (boinc_8db87e854bcbbaf7, slot#25)
2025-06-05 12:51:22 (12768): Removing network bandwidth throttle group from VM.
2025-06-05 12:51:22 (12768): Removing VM from VirtualBox.
12:51:27 (12768): called boinc_finish(0)

</stderr_txt>
]]>

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