Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:00:24 (28513): wrapper (7.7.26015): starting
14:00:24 (28513): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 14:00:25] Arguments: --nthreads 8
[2025-06-05 14:00:25] Threads: 8
[2025-06-05 14:00:25] Checking for CVMFS
[2025-06-05 14:00:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 14:00:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 14:00:25] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 14:00:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 14:00:26] 2.11.2.0 11201 34633 88864 146818 1 159 20684010 25165824 2547 130560 0 17911193 99.782 21221149 2102 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 14:00:26] CVMFS is ok
[2025-06-05 14:00:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 14:00:26] Checking for apptainer binary...
[2025-06-05 14:00:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 14:00:26] Running /usr/bin/apptainer --version
[2025-06-05 14:00:26] apptainer version 1.3.2-1.el7
[2025-06-05 14:00:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 14:00:27] cg-vwn265.simple-grid.lan
[2025-06-05 14:00:27] apptainer works
[2025-06-05 14:00:27] Set ATHENA_PROC_NUMBER=8
[2025-06-05 14:00:27] Set ATHENA_CORE_NUMBER=8
[2025-06-05 14:00:27] Starting ATLAS job with PandaID=6668191090
[2025-06-05 14:00:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 20:09:38]  *** The last 200 lines of the pilot log: ***
[2025-06-05 20:09:39] 2025-06-05 17:12:37,228 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6668191090/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 20:09:39] 2025-06-05 17:12:37,228 | INFO     | extracted standard info from prmon json
[2025-06-05 20:09:39] 2025-06-05 17:12:37,228 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 20:09:39] 2025-06-05 17:12:37,228 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 20:09:39] 2025-06-05 17:12:37,229 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 20:09:39] 2025-06-05 17:12:37,229 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 20:09:39] 2025-06-05 17:12:37,239 | INFO     | fitting pss+swap vs Time
[2025-06-05 20:09:39] 2025-06-05 17:12:37,240 | INFO     | sum of square deviations: 8711530780.0
[2025-06-05 20:09:39] 2025-06-05 17:12:37,245 | INFO     | sum of deviations: 44954579550.5
[2025-06-05 20:09:39] 2025-06-05 17:12:37,245 | INFO     | mean x: 1749134176.5
[2025-06-05 20:09:39] 2025-06-05 17:12:37,245 | INFO     | mean y: 2476829.6677631577
[2025-06-05 20:09:39] 2025-06-05 17:12:37,245 | INFO     | -- intersect: -9023674080.857697
[2025-06-05 20:09:39] 2025-06-05 17:12:37,245 | INFO     | intersect: -9023674080.857697
[2025-06-05 20:09:39] 2025-06-05 17:12:37,246 | INFO     | chi2: 2.3935396447895023
[2025-06-05 20:09:39] 2025-06-05 17:12:37,247 | INFO     | sum of square deviations: 8288713550.0
[2025-06-05 20:09:39] 2025-06-05 17:12:37,249 | INFO     | sum of deviations: 64078870324.0
[2025-06-05 20:09:39] 2025-06-05 17:12:37,253 | INFO     | mean x: 1749134024.0
[2025-06-05 20:09:39] 2025-06-05 17:12:37,253 | INFO     | mean y: 2483629.906354515
[2025-06-05 20:09:39] 2025-06-05 17:12:37,253 | INFO     | -- intersect: -13519823737.46458
[2025-06-05 20:09:39] 2025-06-05 17:12:37,253 | INFO     | intersect: -13519823737.46458
[2025-06-05 20:09:39] 2025-06-05 17:12:37,254 | INFO     | chi2: 1.6159462517753733
[2025-06-05 20:09:39] 2025-06-05 17:12:37,254 | INFO     | current chi2=1.6159462517753733 (change=32.48717416094914 %)
[2025-06-05 20:09:39] 2025-06-05 17:12:37,255 | INFO     | sum of square deviations: 7879803557.5
[2025-06-05 20:09:39] 2025-06-05 17:12:37,257 | INFO     | sum of deviations: 62642186947.49999
[2025-06-05 20:09:39] 2025-06-05 17:12:37,258 | INFO     | mean x: 1749133871.5
[2025-06-05 20:09:39] 2025-06-05 17:12:37,258 | INFO     | mean y: 2483094.0578231295
[2025-06-05 20:09:39] 2025-06-05 17:12:37,258 | INFO     | -- intersect: -13902631440.227625
[2025-06-05 20:09:39] 2025-06-05 17:12:37,258 | INFO     | intersect: -13902631440.227625
[2025-06-05 20:09:39] 2025-06-05 17:12:37,258 | INFO     | chi2: 1.6163132622590188
[2025-06-05 20:09:39] 2025-06-05 17:12:37,262 | INFO     | current chi2=1.6163132622590188 (change=-0.02271180017542627 %)
[2025-06-05 20:09:39] 2025-06-05 17:12:37,262 | INFO     | right removable region: 293
[2025-06-05 20:09:39] 2025-06-05 17:12:37,263 | INFO     | sum of square deviations: 8288713550.0
[2025-06-05 20:09:39] 2025-06-05 17:12:37,265 | INFO     | sum of deviations: -7044462695.000002
[2025-06-05 20:09:39] 2025-06-05 17:12:37,265 | INFO     | mean x: 1749134329.0
[2025-06-05 20:09:39] 2025-06-05 17:12:37,266 | INFO     | mean y: 2495465.08361204
[2025-06-05 20:09:39] 2025-06-05 17:12:37,266 | INFO     | -- intersect: 1489060473.6167345
[2025-06-05 20:09:39] 2025-06-05 17:12:37,266 | INFO     | intersect: 1489060473.6167345
[2025-06-05 20:09:39] 2025-06-05 17:12:37,266 | INFO     | chi2: 0.8302680813402193
[2025-06-05 20:09:39] 2025-06-05 17:12:37,266 | INFO     | current chi2=0.8302680813402193 (change=65.31212327534953 %)
[2025-06-05 20:09:39] 2025-06-05 17:12:37,267 | INFO     | sum of square deviations: 7879803557.5
[2025-06-05 20:09:39] 2025-06-05 17:12:37,270 | INFO     | sum of deviations: -5617320267.499996
[2025-06-05 20:09:39] 2025-06-05 17:12:37,270 | INFO     | mean x: 1749134481.5
[2025-06-05 20:09:39] 2025-06-05 17:12:37,270 | INFO     | mean y: 2494913.792517007
[2025-06-05 20:09:39] 2025-06-05 17:12:37,270 | INFO     | -- intersect: 1249410335.200603
[2025-06-05 20:09:39] 2025-06-05 17:12:37,270 | INFO     | intersect: 1249410335.200603
[2025-06-05 20:09:39] 2025-06-05 17:12:37,271 | INFO     | chi2: 0.8148135104817298
[2025-06-05 20:09:39] 2025-06-05 17:12:37,271 | INFO     | current chi2=0.8148135104817298 (change=1.8613952777207547 %)
[2025-06-05 20:09:39] 2025-06-05 17:12:37,271 | INFO     | left removable region: 20
[2025-06-05 20:09:39] 2025-06-05 17:12:37,271 | INFO     | sum of square deviations: 6309000152.0
[2025-06-05 20:09:39] 2025-06-05 17:12:37,274 | INFO     | sum of deviations: 12220821434.999996
[2025-06-05 20:09:39] 2025-06-05 17:12:37,274 | INFO     | mean x: 1749134451.0
[2025-06-05 20:09:39] 2025-06-05 17:12:37,274 | INFO     | mean y: 2502378.3076923075
[2025-06-05 20:09:39] 2025-06-05 17:12:37,274 | INFO     | -- intersect: -3385650938.617089
[2025-06-05 20:09:39] 2025-06-05 17:12:37,274 | INFO     | intersect: -3385650938.617089
[2025-06-05 20:09:39] 2025-06-05 17:12:37,275 | INFO     | chi2: 0.0025943827129060334
[2025-06-05 20:09:39] 2025-06-05 17:12:37,275 | INFO     | -- intersect: -3385650938.617089
[2025-06-05 20:09:39] 2025-06-05 17:12:37,275 | INFO     | current memory leak: 1.94 B/s (using 273 data points, chi2=0.00)
[2025-06-05 20:09:39] 2025-06-05 17:12:37,276 | INFO     | ..............................
[2025-06-05 20:09:39] 2025-06-05 17:12:37,276 | INFO     | . Timing measurements:
[2025-06-05 20:09:39] 2025-06-05 17:12:37,276 | INFO     | . get job = 0 s
[2025-06-05 20:09:39] 2025-06-05 17:12:37,276 | INFO     | . initial setup = 2 s
[2025-06-05 20:09:39] 2025-06-05 17:12:37,276 | INFO     | . payload setup = 35 s
[2025-06-05 20:09:39] 2025-06-05 17:12:37,277 | INFO     | . stage-in = 0 s
[2025-06-05 20:09:39] 2025-06-05 17:12:37,277 | INFO     | . payload execution = 18553 s
[2025-06-05 20:09:39] 2025-06-05 17:12:37,277 | INFO     | . stage-out = 3 s
[2025-06-05 20:09:39] 2025-06-05 17:12:37,277 | INFO     | . log creation = 0 s
[2025-06-05 20:09:39] 2025-06-05 17:12:37,277 | INFO     | ..............................
[2025-06-05 20:09:39] 2025-06-05 17:12:37,412 | INFO     | 
[2025-06-05 20:09:39] 2025-06-05 17:12:37,412 | INFO     | job summary report
[2025-06-05 20:09:39] 2025-06-05 17:12:37,412 | INFO     | --------------------------------------------------
[2025-06-05 20:09:39] 2025-06-05 17:12:37,412 | INFO     | PanDA job id: 6668191090
[2025-06-05 20:09:39] 2025-06-05 17:12:37,412 | INFO     | task id: 44871837
[2025-06-05 20:09:39] 2025-06-05 17:12:37,412 | INFO     | errors: (none)
[2025-06-05 20:09:39] 2025-06-05 17:12:37,413 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 20:09:39] 2025-06-05 17:12:37,413 | INFO     | pilot state: finished 
[2025-06-05 20:09:39] 2025-06-05 17:12:37,413 | INFO     | transexitcode: 0
[2025-06-05 20:09:39] 2025-06-05 17:12:37,413 | INFO     | exeerrorcode: 0
[2025-06-05 20:09:39] 2025-06-05 17:12:37,413 | INFO     | exeerrordiag: 
[2025-06-05 20:09:39] 2025-06-05 17:12:37,413 | INFO     | exitcode: 0
[2025-06-05 20:09:39] 2025-06-05 17:12:37,413 | INFO     | exitmsg: OK
[2025-06-05 20:09:39] 2025-06-05 17:12:37,413 | INFO     | cpuconsumptiontime: 70372 s
[2025-06-05 20:09:39] 2025-06-05 17:12:37,413 | INFO     | nevents: 400
[2025-06-05 20:09:39] 2025-06-05 17:12:37,413 | INFO     | neventsw: 0
[2025-06-05 20:09:39] 2025-06-05 17:12:37,413 | INFO     | pid: 11792
[2025-06-05 20:09:39] 2025-06-05 17:12:37,414 | INFO     | pgrp: 11792
[2025-06-05 20:09:39] 2025-06-05 17:12:37,414 | INFO     | corecount: 8
[2025-06-05 20:09:39] 2025-06-05 17:12:37,414 | INFO     | event service: False
[2025-06-05 20:09:39] 2025-06-05 17:12:37,414 | INFO     | sizes: {0: 2397221, 1: 2397420, 10: 2397626, 12: 2397654, 18593: 2429441, 18597: 2438382, 18598: 2438566, 18686: 2438736}
[2025-06-05 20:09:39] 2025-06-05 17:12:37,414 | INFO     | --------------------------------------------------
[2025-06-05 20:09:39] 2025-06-05 17:12:37,414 | INFO     | 
[2025-06-05 20:09:39] 2025-06-05 17:12:37,414 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-06-05 20:09:39] 2025-06-05 17:12:37,801 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 20:09:39] 2025-06-05 17:12:37,802 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 20:09:39] 2025-06-05 17:12:37,802 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 20:09:39] 2025-06-05 17:12:37,802 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 20:09:39] 2025-06-05 17:12:37,802 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 20:09:39] 2025-06-05 17:12:37,802 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 20:09:39] 2025-06-05 17:12:37,802 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 20:09:39] 2025-06-05 17:12:37,803 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 20:09:39] 2025-06-05 17:12:37,803 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 20:09:39] 2025-06-05 17:12:37,803 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 20:09:39] 2025-06-05 17:12:37,803 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 20:09:39] 2025-06-05 17:12:37,803 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 20:09:39] 2025-06-05 17:12:37,803 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 20:09:39] 2025-06-05 17:12:37,803 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 20:09:39] 2025-06-05 17:12:37,803 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 20:09:39] 2025-06-05 17:12:37,804 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 20:09:39] 2025-06-05 17:12:37,804 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 20:09:39] 2025-06-05 17:12:37,804 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 20:09:39] 2025-06-05 17:12:37,804 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 20:09:39] 2025-06-05 17:12:37,804 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 20:09:39] 2025-06-05 17:12:37,804 | INFO     | job 6668191090 has completed (purged errors)
[2025-06-05 20:09:39] 2025-06-05 17:12:37,804 | INFO     | overall cleanup function is called
[2025-06-05 20:09:39] 2025-06-05 17:12:38,814 | INFO     | --- collectZombieJob: --- 10, [11792]
[2025-06-05 20:09:39] 2025-06-05 17:12:38,814 | INFO     | zombie collector waiting for pid 11792
[2025-06-05 20:09:39] 2025-06-05 17:12:38,814 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 20:09:39] 2025-06-05 17:12:38,815 | INFO     | collected zombie processes
[2025-06-05 20:09:39] 2025-06-05 17:12:38,815 | INFO     | will attempt to kill all subprocesses of pid=11792
[2025-06-05 20:09:39] 2025-06-05 17:12:38,950 | INFO     | process IDs to be killed: [11792] (in reverse order)
[2025-06-05 20:09:39] 2025-06-05 17:12:39,392 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 20:09:39] 2025-06-05 17:12:39,393 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 20:09:39] 2025-06-05 17:12:39,403 | INFO     | did not find any defunct processes belonging to 11792
[2025-06-05 20:09:39] 2025-06-05 17:12:39,406 | INFO     | did not find any defunct processes belonging to 11792
[2025-06-05 20:09:39] 2025-06-05 17:12:39,407 | INFO     | ready for new job
[2025-06-05 20:09:39] 2025-06-05 17:12:39,407 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 20:09:39] 2025-06-05 17:12:39,409 | INFO     | **************************************
[2025-06-05 20:09:39] 2025-06-05 17:12:39,410 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 20:09:39] 2025-06-05 17:12:39,410 | INFO     | **************************************
[2025-06-05 20:09:39] 2025-06-05 17:12:39,410 | INFO     | 
[2025-06-05 20:09:39] 2025-06-05 17:12:39,410 | INFO     | pilot is running in a VM
[2025-06-05 20:09:39] 2025-06-05 17:12:39,410 | INFO     | architecture information:
[2025-06-05 20:09:39] 2025-06-05 17:12:39,426 | INFO     | executing command: cat /etc/os-release
[2025-06-05 20:09:39] 2025-06-05 17:12:39,746 | INFO     | cat /etc/os-release:
[2025-06-05 20:09:39] NAME="CentOS Linux"
[2025-06-05 20:09:39] VERSION="7 (Core)"
[2025-06-05 20:09:39] ID="centos"
[2025-06-05 20:09:39] ID_LIKE="rhel fedora"
[2025-06-05 20:09:39] VERSION_ID="7"
[2025-06-05 20:09:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 20:09:39] ANSI_COLOR="0;31"
[2025-06-05 20:09:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 20:09:39] HOME_URL="https://www.centos.org/"
[2025-06-05 20:09:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 20:09:39] 
[2025-06-05 20:09:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 20:09:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 20:09:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 20:09:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 20:09:39] 
[2025-06-05 20:09:39] 2025-06-05 17:12:39,747 | INFO     | **************************************
[2025-06-05 20:09:39] 2025-06-05 17:12:40,249 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-06-05 20:09:39] 2025-06-05 17:12:40,421 | INFO     | sufficient remaining disk space (497221107712 B)
[2025-06-05 20:09:39] 2025-06-05 17:12:40,422 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 20:09:39] 2025-06-05 17:12:40,422 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 20:09:39] 2025-06-05 17:12:40,422 | INFO     | update_server=False
[2025-06-05 20:09:39] 2025-06-05 17:12:40,422 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 20:09:39] 2025-06-05 17:12:40,423 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 20:09:39] 2025-06-05 17:12:40,423 | INFO     | aborting loop
[2025-06-05 20:09:39] 2025-06-05 17:12:40,431 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 20:09:39] 2025-06-05 17:12:40,803 | INFO     | all data control threads have been joined
[2025-06-05 20:09:39] 2025-06-05 17:12:41,069 | INFO     | all payload control threads have been joined
[2025-06-05 20:09:39] 2025-06-05 17:12:41,243 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 20:09:39] 2025-06-05 17:12:41,243 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 20:09:39] 2025-06-05 17:12:41,243 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 20:09:39] 2025-06-05 17:12:41,431 | INFO     | [job] retrieve thread has finished
[2025-06-05 20:09:39] 2025-06-05 17:12:41,432 | INFO     | [job] job monitor thread has finished
[2025-06-05 20:09:39] 2025-06-05 17:12:41,436 | INFO     | [payload] failed_post thread has finished
[2025-06-05 20:09:39] 2025-06-05 17:12:41,439 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 20:09:39] 2025-06-05 17:12:41,502 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 20:09:39] 2025-06-05 17:12:41,662 | INFO     | all job control threads have been joined
[2025-06-05 20:09:39] 2025-06-05 17:12:41,714 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 20:09:39] 2025-06-05 17:12:41,802 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 20:09:39] 2025-06-05 17:12:41,809 | INFO     | [data] control thread has finished
[2025-06-05 20:09:39] 2025-06-05 17:12:42,075 | INFO     | [payload] control thread has finished
[2025-06-05 20:09:39] 2025-06-05 17:12:42,162 | INFO     | [job] validate thread has finished
[2025-06-05 20:09:39] 2025-06-05 17:12:42,434 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 20:09:39] 2025-06-05 17:12:42,443 | INFO     | [data] copytool_out thread has finished
[2025-06-05 20:09:39] 2025-06-05 17:12:42,574 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 20:09:39] 2025-06-05 17:12:42,668 | INFO     | [job] control thread has finished
[2025-06-05 20:09:39] 2025-06-05 17:12:42,905 | INFO     | [payload] validate_post thread has finished
[2025-06-05 20:09:39] 2025-06-05 17:12:42,907 | INFO     | [data] copytool_in thread has finished
[2025-06-05 20:09:39] 2025-06-05 17:12:43,440 | INFO     | [job] queue monitor thread has finished
[2025-06-05 20:09:39] 2025-06-05 17:12:45,511 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 20:09:39] 2025-06-05 17:12:47,059 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140112215787328)>', '<ExcThread(monitor, started 140111555585792)>']
[2025-06-05 20:09:39] 2025-06-05 17:12:47,280 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 20:09:39] 2025-06-05 17:12:47,280 | INFO     | [monitor] control thread has ended
[2025-06-05 20:09:39] 2025-06-05 17:12:52,085 | INFO     | all workflow threads have been joined
[2025-06-05 20:09:39] 2025-06-05 17:12:52,085 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 20:09:39] 2025-06-05 17:12:52,085 | INFO     | traces error code: 0
[2025-06-05 20:09:39] 2025-06-05 17:12:52,086 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 20:09:39] 2025-06-05 17:12:52,451 [wrapper] ==== pilot stdout END ====
[2025-06-05 20:09:39] 2025-06-05 17:12:52,490 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 20:09:39] 2025-06-05 17:12:52,523 [wrapper] pilotpid: 32186
[2025-06-05 20:09:39] 2025-06-05 17:12:52,608 [wrapper] Pilot exit status: 0
[2025-06-05 20:09:39] 2025-06-05 17:12:53,121 [wrapper] pandaids: 6668191090
[2025-06-05 20:09:39] 2025-06-05 17:12:54,051 [wrapper] cleanup supervisor_pilot 32396 32187
[2025-06-05 20:09:39] 2025-06-05 17:12:54,199 [wrapper] Test setup, not cleaning
[2025-06-05 20:09:39] 2025-06-05 17:12:54,342 [wrapper] apfmon messages muted
[2025-06-05 20:09:39] 2025-06-05 17:12:54,438 [wrapper] ==== wrapper stdout END ====
[2025-06-05 20:09:39] 2025-06-05 17:12:54,512 [wrapper] ==== wrapper stderr END ====
[2025-06-05 20:09:39]  *** Error codes and diagnostics ***
[2025-06-05 20:09:39]     "exeErrorCode": 0,
[2025-06-05 20:09:39]     "exeErrorDiag": "",
[2025-06-05 20:09:39]     "pilotErrorCode": 0,
[2025-06-05 20:09:39]     "pilotErrorDiag": "",
[2025-06-05 20:09:39]  *** Listing of results directory ***
[2025-06-05 20:09:39] total 422460
[2025-06-05 20:09:39] -rw-r--r--. 1 boinc boinc    495897 May 28 07:33 pilot3.tar.gz
[2025-06-05 20:09:39] -rwx------. 1 boinc boinc     37140 May 28 07:56 runpilot2-wrapper.sh
[2025-06-05 20:09:39] -rw-r--r--. 1 boinc boinc      5111 May 28 07:56 queuedata.json
[2025-06-05 20:09:39] -rw-r--r--. 1 boinc boinc       100 Jun  5 14:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 20:09:39] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 14:00 run_atlas
[2025-06-05 20:09:39] -rw-r--r--. 1 boinc boinc       105 Jun  5 14:00 job.xml
[2025-06-05 20:09:39] -rw-r--r--. 1 boinc boinc      6391 Jun  5 14:00 init_data.xml
[2025-06-05 20:09:39] -rw-r--r--. 2 boinc boinc 226545173 Jun  5 14:00 EVNT.44871834._003110.pool.root.1
[2025-06-05 20:09:39] -rw-r--r--. 2 boinc boinc     15093 Jun  5 14:00 start_atlas.sh
[2025-06-05 20:09:39] drwxrwx--x. 2 boinc boinc        68 Jun  5 14:00 shared
[2025-06-05 20:09:39] -rw-r--r--. 2 boinc boinc    508876 Jun  5 14:00 input.tar.gz
[2025-06-05 20:09:39] -rw-r--r--. 1 boinc boinc         0 Jun  5 14:00 boinc_lockfile
[2025-06-05 20:09:39] -rw-r--r--. 1 boinc boinc      2559 Jun  5 14:00 pandaJob.out
[2025-06-05 20:09:39] -rw-------. 1 boinc boinc    982836 Jun  5 14:00 agis_schedconf.cvmfs.json
[2025-06-05 20:09:39] drwx------. 4 boinc boinc      4096 Jun  5 14:00 pilot3
[2025-06-05 20:09:39] -rw-------. 1 boinc boinc 198180725 Jun  5 19:09 HITS.44871837._079652.pool.root.1
[2025-06-05 20:09:39] -rw-r--r--. 1 boinc boinc       531 Jun  5 19:10 boinc_task_state.xml
[2025-06-05 20:09:39] -rw-------. 1 boinc boinc      1016 Jun  5 19:11 memory_monitor_summary.json
[2025-06-05 20:09:39] -rw-------. 1 boinc boinc   1598969 Jun  5 19:11 agis_ddmendpoints.agis.ALL.json
[2025-06-05 20:09:39] -rw-------. 1 boinc boinc    423115 Jun  5 19:11 log.44871837._079652.job.log.tgz.1
[2025-06-05 20:09:39] -rw-------. 1 boinc boinc        95 Jun  5 19:12 pilot_heartbeat.json
[2025-06-05 20:09:39] -rw-------. 1 boinc boinc      7685 Jun  5 19:12 heartbeat.json
[2025-06-05 20:09:39] -rw-------. 1 boinc boinc      4416 Jun  5 19:12 pilotlog.txt
[2025-06-05 20:09:39] -rw-------. 1 boinc boinc   1605778 Jun  5 19:12 log.44871837._079652.job.log.1
[2025-06-05 20:09:39] -rw-------. 1 boinc boinc       357 Jun  5 19:12 output.list
[2025-06-05 20:09:39] -rw-r--r--. 1 boinc boinc       620 Jun  5 19:12 runtime_log
[2025-06-05 20:09:39] -rw-------. 1 boinc boinc   2048000 Jun  5 19:12 result.tar.gz
[2025-06-05 20:09:39] -rw-------. 1 boinc boinc       657 Jun  5 19:12 yhBMDmCxOe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmuPbKDmQHxXcn.diag
[2025-06-05 20:09:39] -rw-r--r--. 1 boinc boinc      8659 Jun  5 19:12 runtime_log.err
[2025-06-05 20:09:39] -rw-r--r--. 1 boinc boinc      8192 Jun  5 20:09 boinc_mmap_file
[2025-06-05 20:09:39] -rw-r--r--. 1 boinc boinc        28 Jun  5 20:09 wrapper_checkpoint.txt
[2025-06-05 20:09:39] -rw-r--r--. 1 boinc boinc     20494 Jun  5 20:09 stderr.txt
[2025-06-05 20:09:39] HITS file was successfully produced:
[2025-06-05 20:09:39] -rw-------. 1 boinc boinc 198180725 Jun  5 19:09 shared/HITS.pool.root.1
[2025-06-05 20:09:39]  *** Contents of shared directory: ***
[2025-06-05 20:09:39] total 417288
[2025-06-05 20:09:39] -rw-r--r--. 2 boinc boinc 226545173 Jun  5 14:00 ATLAS.root_0
[2025-06-05 20:09:39] -rw-r--r--. 2 boinc boinc     15093 Jun  5 14:00 start_atlas.sh
[2025-06-05 20:09:39] -rw-r--r--. 2 boinc boinc    508876 Jun  5 14:00 input.tar.gz
[2025-06-05 20:09:39] -rw-------. 1 boinc boinc 198180725 Jun  5 19:09 HITS.pool.root.1
[2025-06-05 20:09:39] -rw-------. 1 boinc boinc   2048000 Jun  5 19:12 result.tar.gz
20:09:40 (28513): run_atlas exited; CPU time 70609.264731
20:09:40 (28513): called boinc_finish(0)

</stderr_txt>
]]>

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