Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:22:07 (12282): wrapper (7.7.26015): starting
07:22:07 (12282): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 07:22:07] Arguments: --nthreads 8
[2025-06-05 07:22:07] Threads: 8
[2025-06-05 07:22:07] Checking for CVMFS
[2025-06-05 07:22:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 07:22:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 07:22:08] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 07:22:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 07:22:09] 2.11.2.0 3220 110373 482708 146816 0 650 11127416 18432000 12435 130560 0 498915043 99.123 954377322 34778 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-05 07:22:09] CVMFS is ok
[2025-06-05 07:22:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 07:22:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 07:22:09] Further information can be found at the LHC@home message board.
[2025-06-05 07:22:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 07:22:09] Checking for apptainer binary...
[2025-06-05 07:22:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 07:22:09] Running /usr/bin/apptainer --version
[2025-06-05 07:22:10] apptainer version 1.3.2-1.el7
[2025-06-05 07:22:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 07:22:20] c-211-11.aglt2.org
[2025-06-05 07:22:20] apptainer works
[2025-06-05 07:22:20] Set ATHENA_PROC_NUMBER=8
[2025-06-05 07:22:20] Set ATHENA_CORE_NUMBER=8
[2025-06-05 07:22:20] Starting ATLAS job with PandaID=6668532402
[2025-06-05 07:22:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
08:09:12 (16847): wrapper (7.7.26015): starting
08:09:12 (16847): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 08:09:12] Arguments: --nthreads 8
[2025-06-05 08:09:12] Threads: 8
[2025-06-05 08:09:12] This job has been restarted, cleaning up previous attempt
[2025-06-05 08:09:12] Checking for CVMFS
[2025-06-05 08:09:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 08:09:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 08:09:13] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 08:09:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 08:09:13] 2.11.2.0 3220 110420 466320 146818 1 70 12325481 18432001 11709 130560 0 499006445 99.121 954914083 34784 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-05 08:09:13] CVMFS is ok
[2025-06-05 08:09:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 08:09:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 08:09:13] Further information can be found at the LHC@home message board.
[2025-06-05 08:09:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 08:09:13] Checking for apptainer binary...
[2025-06-05 08:09:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 08:09:13] Running /usr/bin/apptainer --version
[2025-06-05 08:09:13] apptainer version 1.3.2-1.el7
[2025-06-05 08:09:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 08:09:15] c-211-11.aglt2.org
[2025-06-05 08:09:15] apptainer works
[2025-06-05 08:09:15] Set ATHENA_PROC_NUMBER=8
[2025-06-05 08:09:15] Set ATHENA_CORE_NUMBER=8
[2025-06-05 08:09:15] Starting ATLAS job with PandaID=6668532402
[2025-06-05 08:09:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 19:30:41]  *** The last 200 lines of the pilot log: ***
[2025-06-05 19:30:41] 2025-06-05 23:30:19,607 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6668532402/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 19:30:41] 2025-06-05 23:30:19,607 | INFO     | extracted standard info from prmon json
[2025-06-05 19:30:41] 2025-06-05 23:30:19,608 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 19:30:41] 2025-06-05 23:30:19,608 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 19:30:41] 2025-06-05 23:30:19,608 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 19:30:41] 2025-06-05 23:30:19,608 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 19:30:41] 2025-06-05 23:30:19,637 | INFO     | fitting pss+swap vs Time
[2025-06-05 19:30:41] 2025-06-05 23:30:19,643 | INFO     | sum of square deviations: 92428633581.08977
[2025-06-05 19:30:41] 2025-06-05 23:30:19,667 | INFO     | sum of deviations: 122464371417.5989
[2025-06-05 19:30:41] 2025-06-05 23:30:19,668 | INFO     | mean x: 1749145756.2814372
[2025-06-05 19:30:41] 2025-06-05 23:30:19,668 | INFO     | mean y: 2470174.709580838
[2025-06-05 19:30:41] 2025-06-05 23:30:19,668 | INFO     | -- intersect: -2315080429.052588
[2025-06-05 19:30:41] 2025-06-05 23:30:19,668 | INFO     | intersect: -2315080429.052588
[2025-06-05 19:30:41] 2025-06-05 23:30:19,669 | INFO     | chi2: 3.18274820371156
[2025-06-05 19:30:41] 2025-06-05 23:30:19,670 | INFO     | sum of square deviations: 90368710122.15688
[2025-06-05 19:30:41] 2025-06-05 23:30:19,697 | INFO     | sum of deviations: 209948838868.27478
[2025-06-05 19:30:41] 2025-06-05 23:30:19,698 | INFO     | mean x: 1749145603.7843137
[2025-06-05 19:30:41] 2025-06-05 23:30:19,698 | INFO     | mean y: 2476621.5263951733
[2025-06-05 19:30:41] 2025-06-05 23:30:19,698 | INFO     | -- intersect: -4061220735.995423
[2025-06-05 19:30:41] 2025-06-05 23:30:19,698 | INFO     | intersect: -4061220735.995423
[2025-06-05 19:30:41] 2025-06-05 23:30:19,699 | INFO     | chi2: 1.6115095527879408
[2025-06-05 19:30:41] 2025-06-05 23:30:19,699 | INFO     | current chi2=1.6115095527879408 (change=49.367356459154394 %)
[2025-06-05 19:30:41] 2025-06-05 23:30:19,700 | INFO     | sum of square deviations: 88339624572.71283
[2025-06-05 19:30:41] 2025-06-05 23:30:19,724 | INFO     | sum of deviations: 207848876907.72366
[2025-06-05 19:30:41] 2025-06-05 23:30:19,725 | INFO     | mean x: 1749145451.287234
[2025-06-05 19:30:41] 2025-06-05 23:30:19,727 | INFO     | mean y: 2476463.7051671734
[2025-06-05 19:30:41] 2025-06-05 23:30:19,727 | INFO     | -- intersect: -4112980437.5074763
[2025-06-05 19:30:41] 2025-06-05 23:30:19,727 | INFO     | intersect: -4112980437.5074763
[2025-06-05 19:30:41] 2025-06-05 23:30:19,728 | INFO     | chi2: 1.611444170252529
[2025-06-05 19:30:41] 2025-06-05 23:30:19,729 | INFO     | current chi2=1.611444170252529 (change=0.004057222949666058 %)
[2025-06-05 19:30:41] 2025-06-05 23:30:19,729 | INFO     | right removable region: 657
[2025-06-05 19:30:41] 2025-06-05 23:30:19,738 | INFO     | sum of square deviations: 90368472953.01347
[2025-06-05 19:30:41] 2025-06-05 23:30:19,765 | INFO     | sum of deviations: 6861524114.425392
[2025-06-05 19:30:41] 2025-06-05 23:30:19,766 | INFO     | mean x: 1749145908.7873304
[2025-06-05 19:30:41] 2025-06-05 23:30:19,766 | INFO     | mean y: 2478708.669683258
[2025-06-05 19:30:41] 2025-06-05 23:30:19,766 | INFO     | -- intersect: -130330958.69111246
[2025-06-05 19:30:41] 2025-06-05 23:30:19,766 | INFO     | intersect: -130330958.69111246
[2025-06-05 19:30:41] 2025-06-05 23:30:19,769 | INFO     | chi2: 1.6130737614188506
[2025-06-05 19:30:41] 2025-06-05 23:30:19,770 | INFO     | current chi2=1.6130737614188506 (change=49.318209981620114 %)
[2025-06-05 19:30:41] 2025-06-05 23:30:19,773 | INFO     | sum of square deviations: 88339190311.97585
[2025-06-05 19:30:41] 2025-06-05 23:30:19,798 | INFO     | sum of deviations: -8616319370.19751
[2025-06-05 19:30:41] 2025-06-05 23:30:19,799 | INFO     | mean x: 1749146061.2917933
[2025-06-05 19:30:41] 2025-06-05 23:30:19,799 | INFO     | mean y: 2479869.8708206685
[2025-06-05 19:30:41] 2025-06-05 23:30:19,799 | INFO     | -- intersect: 173085928.58596388
[2025-06-05 19:30:41] 2025-06-05 23:30:19,799 | INFO     | intersect: 173085928.58596388
[2025-06-05 19:30:41] 2025-06-05 23:30:19,802 | INFO     | chi2: 1.591006970471055
[2025-06-05 19:30:41] 2025-06-05 23:30:19,803 | INFO     | current chi2=1.591006970471055 (change=1.3679963976591993 %)
[2025-06-05 19:30:41] 2025-06-05 23:30:19,803 | INFO     | left removable region: 20
[2025-06-05 19:30:41] 2025-06-05 23:30:19,806 | INFO     | sum of square deviations: 80148038839.24948
[2025-06-05 19:30:41] 2025-06-05 23:30:19,828 | INFO     | sum of deviations: 64193569130.3469
[2025-06-05 19:30:41] 2025-06-05 23:30:19,829 | INFO     | mean x: 1749146030.8069074
[2025-06-05 19:30:41] 2025-06-05 23:30:19,831 | INFO     | mean y: 2487421.6938775512
[2025-06-05 19:30:41] 2025-06-05 23:30:19,831 | INFO     | -- intersect: -1398469211.4793885
[2025-06-05 19:30:41] 2025-06-05 23:30:19,831 | INFO     | intersect: -1398469211.4793885
[2025-06-05 19:30:41] 2025-06-05 23:30:19,832 | INFO     | chi2: 0.0019705206818627728
[2025-06-05 19:30:41] 2025-06-05 23:30:19,833 | INFO     | -- intersect: -1398469211.4793885
[2025-06-05 19:30:41] 2025-06-05 23:30:19,835 | INFO     | current memory leak: 0.80 B/s (using 637 data points, chi2=0.00)
[2025-06-05 19:30:41] 2025-06-05 23:30:19,836 | INFO     | ..............................
[2025-06-05 19:30:41] 2025-06-05 23:30:19,836 | INFO     | . Timing measurements:
[2025-06-05 19:30:41] 2025-06-05 23:30:19,836 | INFO     | . get job = 0 s
[2025-06-05 19:30:41] 2025-06-05 23:30:19,836 | INFO     | . initial setup = 1 s
[2025-06-05 19:30:41] 2025-06-05 23:30:19,837 | INFO     | . payload setup = 12 s
[2025-06-05 19:30:41] 2025-06-05 23:30:19,837 | INFO     | . stage-in = 0 s
[2025-06-05 19:30:41] 2025-06-05 23:30:19,839 | INFO     | . payload execution = 40726 s
[2025-06-05 19:30:41] 2025-06-05 23:30:19,839 | INFO     | . stage-out = 12 s
[2025-06-05 19:30:41] 2025-06-05 23:30:19,839 | INFO     | . log creation = 4 s
[2025-06-05 19:30:41] 2025-06-05 23:30:19,839 | INFO     | ..............................
[2025-06-05 19:30:41] 2025-06-05 23:30:20,255 | INFO     | 
[2025-06-05 19:30:41] 2025-06-05 23:30:20,255 | INFO     | job summary report
[2025-06-05 19:30:41] 2025-06-05 23:30:20,255 | INFO     | --------------------------------------------------
[2025-06-05 19:30:41] 2025-06-05 23:30:20,256 | INFO     | PanDA job id: 6668532402
[2025-06-05 19:30:41] 2025-06-05 23:30:20,256 | INFO     | task id: 44871837
[2025-06-05 19:30:41] 2025-06-05 23:30:20,256 | INFO     | errors: (none)
[2025-06-05 19:30:41] 2025-06-05 23:30:20,256 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 19:30:41] 2025-06-05 23:30:20,256 | INFO     | pilot state: finished 
[2025-06-05 19:30:41] 2025-06-05 23:30:20,256 | INFO     | transexitcode: 0
[2025-06-05 19:30:41] 2025-06-05 23:30:20,256 | INFO     | exeerrorcode: 0
[2025-06-05 19:30:41] 2025-06-05 23:30:20,256 | INFO     | exeerrordiag: 
[2025-06-05 19:30:41] 2025-06-05 23:30:20,256 | INFO     | exitcode: 0
[2025-06-05 19:30:41] 2025-06-05 23:30:20,257 | INFO     | exitmsg: OK
[2025-06-05 19:30:41] 2025-06-05 23:30:20,259 | INFO     | cpuconsumptiontime: 76443 s
[2025-06-05 19:30:41] 2025-06-05 23:30:20,259 | INFO     | nevents: 400
[2025-06-05 19:30:41] 2025-06-05 23:30:20,259 | INFO     | neventsw: 0
[2025-06-05 19:30:41] 2025-06-05 23:30:20,259 | INFO     | pid: 39494
[2025-06-05 19:30:41] 2025-06-05 23:30:20,260 | INFO     | pgrp: 39494
[2025-06-05 19:30:41] 2025-06-05 23:30:20,260 | INFO     | corecount: 8
[2025-06-05 19:30:41] 2025-06-05 23:30:20,260 | INFO     | event service: False
[2025-06-05 19:30:41] 2025-06-05 23:30:20,260 | INFO     | sizes: {0: 2397170, 1: 2397255, 7: 2397575, 12: 2397603, 40745: 2439413, 40746: 2439412, 40760: 2448537, 40762: 2448593, 40831: 2448763}
[2025-06-05 19:30:41] 2025-06-05 23:30:20,260 | INFO     | --------------------------------------------------
[2025-06-05 19:30:41] 2025-06-05 23:30:20,260 | INFO     | 
[2025-06-05 19:30:41] 2025-06-05 23:30:20,261 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-05 19:30:41] 2025-06-05 23:30:20,783 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 19:30:41] 2025-06-05 23:30:20,783 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 19:30:41] 2025-06-05 23:30:20,783 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 19:30:41] 2025-06-05 23:30:20,784 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 19:30:41] 2025-06-05 23:30:20,784 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 19:30:41] 2025-06-05 23:30:20,784 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 19:30:41] 2025-06-05 23:30:20,784 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 19:30:41] 2025-06-05 23:30:20,784 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 19:30:41] 2025-06-05 23:30:20,784 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 19:30:41] 2025-06-05 23:30:20,784 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 19:30:41] 2025-06-05 23:30:20,784 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 19:30:41] 2025-06-05 23:30:20,785 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 19:30:41] 2025-06-05 23:30:20,785 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 19:30:41] 2025-06-05 23:30:20,785 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 19:30:41] 2025-06-05 23:30:20,785 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 19:30:41] 2025-06-05 23:30:20,785 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 19:30:41] 2025-06-05 23:30:20,785 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 19:30:41] 2025-06-05 23:30:20,785 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 19:30:41] 2025-06-05 23:30:20,785 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 19:30:41] 2025-06-05 23:30:20,786 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 19:30:41] 2025-06-05 23:30:20,790 | INFO     | job 6668532402 has completed (purged errors)
[2025-06-05 19:30:41] 2025-06-05 23:30:20,790 | INFO     | overall cleanup function is called
[2025-06-05 19:30:41] 2025-06-05 23:30:21,813 | INFO     | --- collectZombieJob: --- 10, [39494]
[2025-06-05 19:30:41] 2025-06-05 23:30:21,846 | INFO     | zombie collector waiting for pid 39494
[2025-06-05 19:30:41] 2025-06-05 23:30:21,846 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 19:30:41] 2025-06-05 23:30:21,846 | INFO     | collected zombie processes
[2025-06-05 19:30:41] 2025-06-05 23:30:21,847 | INFO     | will attempt to kill all subprocesses of pid=39494
[2025-06-05 19:30:41] 2025-06-05 23:30:22,938 | INFO     | process IDs to be killed: [39494] (in reverse order)
[2025-06-05 19:30:41] 2025-06-05 23:30:23,601 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 19:30:41] 2025-06-05 23:30:23,601 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 19:30:41] 2025-06-05 23:30:23,613 | INFO     | did not find any defunct processes belonging to 39494
[2025-06-05 19:30:41] 2025-06-05 23:30:23,624 | INFO     | did not find any defunct processes belonging to 39494
[2025-06-05 19:30:41] 2025-06-05 23:30:23,625 | INFO     | ready for new job
[2025-06-05 19:30:41] 2025-06-05 23:30:23,625 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 19:30:41] 2025-06-05 23:30:23,628 | INFO     | **************************************
[2025-06-05 19:30:41] 2025-06-05 23:30:23,628 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 19:30:41] 2025-06-05 23:30:23,628 | INFO     | **************************************
[2025-06-05 19:30:41] 2025-06-05 23:30:23,629 | INFO     | 
[2025-06-05 19:30:41] 2025-06-05 23:30:23,631 | INFO     | architecture information:
[2025-06-05 19:30:41] 2025-06-05 23:30:23,635 | INFO     | executing command: cat /etc/os-release
[2025-06-05 19:30:41] 2025-06-05 23:30:23,777 | INFO     | cat /etc/os-release:
[2025-06-05 19:30:41] NAME="CentOS Linux"
[2025-06-05 19:30:41] VERSION="7 (Core)"
[2025-06-05 19:30:41] ID="centos"
[2025-06-05 19:30:41] ID_LIKE="rhel fedora"
[2025-06-05 19:30:41] VERSION_ID="7"
[2025-06-05 19:30:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 19:30:41] ANSI_COLOR="0;31"
[2025-06-05 19:30:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 19:30:41] HOME_URL="https://www.centos.org/"
[2025-06-05 19:30:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 19:30:41] 
[2025-06-05 19:30:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 19:30:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 19:30:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 19:30:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 19:30:41] 
[2025-06-05 19:30:41] 2025-06-05 23:30:23,777 | INFO     | **************************************
[2025-06-05 19:30:41] 2025-06-05 23:30:24,280 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-05 19:30:41] 2025-06-05 23:30:24,370 | INFO     | sufficient remaining disk space (56482594816 B)
[2025-06-05 19:30:41] 2025-06-05 23:30:24,371 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 19:30:41] 2025-06-05 23:30:24,371 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 19:30:41] 2025-06-05 23:30:24,371 | INFO     | update_server=False
[2025-06-05 19:30:41] 2025-06-05 23:30:24,371 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 19:30:41] 2025-06-05 23:30:24,372 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 19:30:41] 2025-06-05 23:30:24,372 | INFO     | aborting loop
[2025-06-05 19:30:41] 2025-06-05 23:30:24,372 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 19:30:41] 2025-06-05 23:30:24,373 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 19:30:41] 2025-06-05 23:30:24,373 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 19:30:41] 2025-06-05 23:30:24,373 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 19:30:41] 2025-06-05 23:30:24,472 | INFO     | all payload control threads have been joined
[2025-06-05 19:30:41] 2025-06-05 23:30:24,540 | INFO     | all data control threads have been joined
[2025-06-05 19:30:41] 2025-06-05 23:30:24,563 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 19:30:41] 2025-06-05 23:30:24,864 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 19:30:41] 2025-06-05 23:30:25,049 | INFO     | all job control threads have been joined
[2025-06-05 19:30:41] 2025-06-05 23:30:25,099 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 19:30:41] 2025-06-05 23:30:25,377 | INFO     | [job] retrieve thread has finished
[2025-06-05 19:30:41] 2025-06-05 23:30:25,383 | INFO     | [data] copytool_in thread has finished
[2025-06-05 19:30:41] 2025-06-05 23:30:25,389 | INFO     | [job] job monitor thread has finished
[2025-06-05 19:30:41] 2025-06-05 23:30:25,481 | INFO     | [payload] control thread has finished
[2025-06-05 19:30:41] 2025-06-05 23:30:25,545 | INFO     | [data] control thread has finished
[2025-06-05 19:30:41] 2025-06-05 23:30:25,750 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 19:30:41] 2025-06-05 23:30:25,863 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 19:30:41] 2025-06-05 23:30:26,055 | INFO     | [job] control thread has finished
[2025-06-05 19:30:41] 2025-06-05 23:30:26,071 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 19:30:41] 2025-06-05 23:30:26,105 | INFO     | [job] queue monitor thread has finished
[2025-06-05 19:30:41] 2025-06-05 23:30:26,165 | INFO     | [job] validate thread has finished
[2025-06-05 19:30:41] 2025-06-05 23:30:26,509 | INFO     | [payload] failed_post thread has finished
[2025-06-05 19:30:41] 2025-06-05 23:30:26,539 | INFO     | [payload] validate_post thread has finished
[2025-06-05 19:30:41] 2025-06-05 23:30:26,719 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 19:30:41] 2025-06-05 23:30:26,876 | INFO     | [data] copytool_out thread has finished
[2025-06-05 19:30:41] 2025-06-05 23:30:28,572 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 19:30:41] 2025-06-05 23:30:29,275 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139811012650816)>', '<ExcThread(monitor, started 139810438113024)>']
[2025-06-05 19:30:41] 2025-06-05 23:30:29,418 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 19:30:41] 2025-06-05 23:30:29,418 | INFO     | [monitor] control thread has ended
[2025-06-05 19:30:41] 2025-06-05 23:30:34,301 | INFO     | all workflow threads have been joined
[2025-06-05 19:30:41] 2025-06-05 23:30:34,301 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 19:30:41] 2025-06-05 23:30:34,301 | INFO     | traces error code: 0
[2025-06-05 19:30:41] 2025-06-05 23:30:34,302 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 19:30:41] 2025-06-05 23:30:37,678 [wrapper] ==== pilot stdout END ====
[2025-06-05 19:30:41] 2025-06-05 23:30:37,734 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 19:30:41] 2025-06-05 23:30:37,801 [wrapper] pilotpid: 26267
[2025-06-05 19:30:41] 2025-06-05 23:30:37,829 [wrapper] Pilot exit status: 0
[2025-06-05 19:30:41] 2025-06-05 23:30:38,084 [wrapper] pandaids: 6668532402 6668532402
[2025-06-05 19:30:41] 2025-06-05 23:30:39,620 [wrapper] cleanup supervisor_pilot 42724 26268
[2025-06-05 19:30:41] 2025-06-05 23:30:39,662 [wrapper] Test setup, not cleaning
[2025-06-05 19:30:41] 2025-06-05 23:30:39,705 [wrapper] apfmon messages muted
[2025-06-05 19:30:41] 2025-06-05 23:30:39,762 [wrapper] ==== wrapper stdout END ====
[2025-06-05 19:30:41] 2025-06-05 23:30:39,888 [wrapper] ==== wrapper stderr END ====
[2025-06-05 19:30:41]  *** Error codes and diagnostics ***
[2025-06-05 19:30:41]     "exeErrorCode": 0,
[2025-06-05 19:30:41]     "exeErrorDiag": "",
[2025-06-05 19:30:41]     "pilotErrorCode": 0,
[2025-06-05 19:30:41]     "pilotErrorDiag": "",
[2025-06-05 19:30:41]  *** Listing of results directory ***
[2025-06-05 19:30:41] total 632200
[2025-06-05 19:30:41] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-06-05 19:30:41] -rw-r--r-- 1 boincer umatlas    495897 May 28 10:07 pilot3.tar.gz
[2025-06-05 19:30:41] -rwx------ 1 boincer umatlas     37140 May 28 10:30 runpilot2-wrapper.sh
[2025-06-05 19:30:41] -rw-r--r-- 1 boincer umatlas      5111 May 28 10:30 queuedata.json
[2025-06-05 19:30:41] -rw-r--r-- 1 boincer umatlas       100 Jun  5 07:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 19:30:41] -rwxr-xr-x 1 boincer umatlas      7986 Jun  5 07:22 run_atlas
[2025-06-05 19:30:41] -rw-r--r-- 1 boincer umatlas       105 Jun  5 07:22 job.xml
[2025-06-05 19:30:41] -rw-r--r-- 3 boincer umatlas 222419038 Jun  5 07:22 EVNT.44871834._003340.pool.root.1
[2025-06-05 19:30:41] -rw-r--r-- 3 boincer umatlas 222419038 Jun  5 07:22 ATLAS.root_0
[2025-06-05 19:30:41] -rw-r--r-- 2 boincer umatlas     15093 Jun  5 07:22 start_atlas.sh
[2025-06-05 19:30:41] drwxrwx--x 2 boincer umatlas      4096 Jun  5 07:22 shared
[2025-06-05 19:30:41] -rw-r--r-- 2 boincer umatlas    508875 Jun  5 07:22 input.tar.gz
[2025-06-05 19:30:41] -rw-r--r-- 1 boincer umatlas         0 Jun  5 07:22 boinc_lockfile
[2025-06-05 19:30:41] -rw-r--r-- 1 boincer umatlas      2558 Jun  5 08:09 pandaJob.out
[2025-06-05 19:30:41] -rw------- 1 boincer umatlas    982836 Jun  5 08:09 agis_schedconf.cvmfs.json
[2025-06-05 19:30:41] -rw-r--r-- 1 boincer umatlas      6133 Jun  5 19:18 init_data.xml
[2025-06-05 19:30:41] -rw------- 1 boincer umatlas 191290768 Jun  5 19:26 HITS.44871837._085647.pool.root.1
[2025-06-05 19:30:41] -rw-r--r-- 1 boincer umatlas       531 Jun  5 19:26 boinc_task_state.xml
[2025-06-05 19:30:41] -rw------- 1 boincer umatlas      1060 Jun  5 19:28 memory_monitor_summary.json
[2025-06-05 19:30:41] -rw------- 1 boincer umatlas   1598969 Jun  5 19:29 agis_ddmendpoints.agis.ALL.json
[2025-06-05 19:30:41] -rw------- 1 boincer umatlas    604903 Jun  5 19:29 log.44871837._085647.job.log.tgz.1
[2025-06-05 19:30:41] -rw------- 1 boincer umatlas        96 Jun  5 19:29 pilot_heartbeat.json
[2025-06-05 19:30:41] -rw------- 1 boincer umatlas      7759 Jun  5 19:30 heartbeat.json
[2025-06-05 19:30:41] -rw-r--r-- 1 boincer umatlas      8192 Jun  5 19:30 boinc_mmap_file
[2025-06-05 19:30:41] -rw-r--r-- 1 boincer umatlas        28 Jun  5 19:30 wrapper_checkpoint.txt
[2025-06-05 19:30:41] -rw------- 1 boincer umatlas      4476 Jun  5 19:30 pilotlog.txt
[2025-06-05 19:30:41] -rw------- 1 boincer umatlas   3099264 Jun  5 19:30 log.44871837._085647.job.log.1
[2025-06-05 19:30:41] -rw------- 1 boincer umatlas       357 Jun  5 19:30 output.list
[2025-06-05 19:30:41] -rw-r--r-- 1 boincer umatlas       620 Jun  5 19:30 runtime_log
[2025-06-05 19:30:41] -rw------- 1 boincer umatlas   3727360 Jun  5 19:30 result.tar.gz
[2025-06-05 19:30:41] -rw-r--r-- 1 boincer umatlas      8745 Jun  5 19:30 runtime_log.err
[2025-06-05 19:30:41] -rw------- 1 boincer umatlas       788 Jun  5 19:30 igJLDmIyWe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm7JcKDmG2utKm.diag
[2025-06-05 19:30:41] -rw-r--r-- 1 boincer umatlas     23106 Jun  5 19:30 stderr.txt
[2025-06-05 19:30:41] HITS file was successfully produced:
[2025-06-05 19:30:41] -rw------- 1 boincer umatlas 191290768 Jun  5 19:26 shared/HITS.pool.root.1
[2025-06-05 19:30:41]  *** Contents of shared directory: ***
[2025-06-05 19:30:41] total 408180
[2025-06-05 19:30:41] -rw-r--r-- 3 boincer umatlas 222419038 Jun  5 07:22 ATLAS.root_0
[2025-06-05 19:30:41] -rw-r--r-- 2 boincer umatlas     15093 Jun  5 07:22 start_atlas.sh
[2025-06-05 19:30:41] -rw-r--r-- 2 boincer umatlas    508875 Jun  5 07:22 input.tar.gz
[2025-06-05 19:30:41] -rw------- 1 boincer umatlas 191290768 Jun  5 19:26 HITS.pool.root.1
[2025-06-05 19:30:41] -rw------- 1 boincer umatlas   3727360 Jun  5 19:30 result.tar.gz
19:30:43 (16847): run_atlas exited; CPU time 77740.898690
19:30:43 (16847): called boinc_finish(0)

</stderr_txt>
]]>

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