Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:21:27 (7263): wrapper (7.7.26015): starting
13:21:27 (7263): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 13:21:27] Arguments: --nthreads 8
[2025-06-05 13:21:27] Threads: 8
[2025-06-05 13:21:27] Checking for CVMFS
[2025-06-05 13:21:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 13:21:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 13:21:27] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 13:21:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 13:21:28] 2.11.2.0 5632 34575 95712 146816 1 167 22035914 25165825 3321 130560 0 17600161 99.788 20431197 2160 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 13:21:28] CVMFS is ok
[2025-06-05 13:21:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 13:21:28] Checking for apptainer binary...
[2025-06-05 13:21:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 13:21:28] Running /usr/bin/apptainer --version
[2025-06-05 13:21:28] apptainer version 1.3.2-1.el7
[2025-06-05 13:21:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 13:21:30] cg-vwn252.simple-grid.lan
[2025-06-05 13:21:30] apptainer works
[2025-06-05 13:21:30] Set ATHENA_PROC_NUMBER=8
[2025-06-05 13:21:30] Set ATHENA_CORE_NUMBER=8
[2025-06-05 13:21:30] Starting ATLAS job with PandaID=6668439170
[2025-06-05 13:21:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 23:49:08]  *** The last 200 lines of the pilot log: ***
[2025-06-05 23:49:08] 2025-06-05 16:32:27,759 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 23:49:08] 2025-06-05 16:32:27,759 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 23:49:08] 2025-06-05 16:32:27,760 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 23:49:08] 2025-06-05 16:32:27,760 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 23:49:08] 2025-06-05 16:32:27,766 | INFO     | fitting pss+swap vs Time
[2025-06-05 23:49:08] 2025-06-05 16:32:27,767 | INFO     | sum of square deviations: 8540720135.5
[2025-06-05 23:49:08] 2025-06-05 16:32:27,770 | INFO     | sum of deviations: 49756348148.5
[2025-06-05 23:49:08] 2025-06-05 16:32:27,770 | INFO     | mean x: 1749131811.5
[2025-06-05 23:49:08] 2025-06-05 16:32:27,770 | INFO     | mean y: 2478183.2350993375
[2025-06-05 23:49:08] 2025-06-05 16:32:27,770 | INFO     | -- intersect: -10187577220.742311
[2025-06-05 23:49:08] 2025-06-05 16:32:27,770 | INFO     | intersect: -10187577220.742311
[2025-06-05 23:49:08] 2025-06-05 16:32:27,771 | INFO     | chi2: 2.6556139746278395
[2025-06-05 23:49:08] 2025-06-05 16:32:27,771 | INFO     | sum of square deviations: 8123493708.0
[2025-06-05 23:49:08] 2025-06-05 16:32:27,774 | INFO     | sum of deviations: 69731779730.0
[2025-06-05 23:49:08] 2025-06-05 16:32:27,775 | INFO     | mean x: 1749131659.0
[2025-06-05 23:49:08] 2025-06-05 16:32:27,775 | INFO     | mean y: 2485380.9966329965
[2025-06-05 23:49:08] 2025-06-05 16:32:27,775 | INFO     | -- intersect: -15011998281.868963
[2025-06-05 23:49:08] 2025-06-05 16:32:27,775 | INFO     | intersect: -15011998281.868963
[2025-06-05 23:49:08] 2025-06-05 16:32:27,775 | INFO     | chi2: 1.8045813381421247
[2025-06-05 23:49:08] 2025-06-05 16:32:27,775 | INFO     | current chi2=1.8045813381421247 (change=32.046549107536585 %)
[2025-06-05 23:49:08] 2025-06-05 16:32:27,776 | INFO     | sum of square deviations: 7720081493.0
[2025-06-05 23:49:08] 2025-06-05 16:32:27,779 | INFO     | sum of deviations: 68280171605.49999
[2025-06-05 23:49:08] 2025-06-05 16:32:27,779 | INFO     | mean x: 1749131506.5
[2025-06-05 23:49:08] 2025-06-05 16:32:27,779 | INFO     | mean y: 2484832.2020547944
[2025-06-05 23:49:08] 2025-06-05 16:32:27,779 | INFO     | -- intersect: -15467688576.29084
[2025-06-05 23:49:08] 2025-06-05 16:32:27,779 | INFO     | intersect: -15467688576.29084
[2025-06-05 23:49:08] 2025-06-05 16:32:27,780 | INFO     | chi2: 1.8050003906666945
[2025-06-05 23:49:08] 2025-06-05 16:32:27,780 | INFO     | current chi2=1.8050003906666945 (change=-0.023221592494200347 %)
[2025-06-05 23:49:08] 2025-06-05 16:32:27,780 | INFO     | right removable region: 291
[2025-06-05 23:49:08] 2025-06-05 16:32:27,780 | INFO     | sum of square deviations: 8123493708.0
[2025-06-05 23:49:08] 2025-06-05 16:32:27,783 | INFO     | sum of deviations: -6703906283.0
[2025-06-05 23:49:08] 2025-06-05 16:32:27,783 | INFO     | mean x: 1749131964.0
[2025-06-05 23:49:08] 2025-06-05 16:32:27,783 | INFO     | mean y: 2498698.1346801347
[2025-06-05 23:49:08] 2025-06-05 16:32:27,783 | INFO     | -- intersect: 1445968365.8354099
[2025-06-05 23:49:08] 2025-06-05 16:32:27,784 | INFO     | intersect: 1445968365.8354099
[2025-06-05 23:49:08] 2025-06-05 16:32:27,784 | INFO     | chi2: 0.9082275187752821
[2025-06-05 23:49:08] 2025-06-05 16:32:27,784 | INFO     | current chi2=0.9082275187752821 (change=65.79971609380607 %)
[2025-06-05 23:49:08] 2025-06-05 16:32:27,785 | INFO     | sum of square deviations: 7720081493.0
[2025-06-05 23:49:08] 2025-06-05 16:32:27,787 | INFO     | sum of deviations: -5301518631.499998
[2025-06-05 23:49:08] 2025-06-05 16:32:27,788 | INFO     | mean x: 1749132116.5
[2025-06-05 23:49:08] 2025-06-05 16:32:27,788 | INFO     | mean y: 2498148.3184931506
[2025-06-05 23:49:08] 2025-06-05 16:32:27,788 | INFO     | -- intersect: 1203658591.1179504
[2025-06-05 23:49:08] 2025-06-05 16:32:27,788 | INFO     | intersect: 1203658591.1179504
[2025-06-05 23:49:08] 2025-06-05 16:32:27,788 | INFO     | chi2: 0.8923005704907786
[2025-06-05 23:49:08] 2025-06-05 16:32:27,789 | INFO     | current chi2=0.8923005704907786 (change=1.7536297849662703 %)
[2025-06-05 23:49:08] 2025-06-05 16:32:27,789 | INFO     | left removable region: 20
[2025-06-05 23:49:08] 2025-06-05 16:32:27,789 | INFO     | sum of square deviations: 6171352920.0
[2025-06-05 23:49:08] 2025-06-05 16:32:27,792 | INFO     | sum of deviations: 13970717515.999998
[2025-06-05 23:49:08] 2025-06-05 16:32:27,792 | INFO     | mean x: 1749132086.0
[2025-06-05 23:49:08] 2025-06-05 16:32:27,792 | INFO     | mean y: 2505896.6531365314
[2025-06-05 23:49:08] 2025-06-05 16:32:27,792 | INFO     | -- intersect: -3957181806.910868
[2025-06-05 23:49:08] 2025-06-05 16:32:27,792 | INFO     | intersect: -3957181806.910868
[2025-06-05 23:49:08] 2025-06-05 16:32:27,793 | INFO     | chi2: 0.002286739775227585
[2025-06-05 23:49:08] 2025-06-05 16:32:27,793 | INFO     | -- intersect: -3957181806.910868
[2025-06-05 23:49:08] 2025-06-05 16:32:27,793 | INFO     | current memory leak: 2.26 B/s (using 271 data points, chi2=0.00)
[2025-06-05 23:49:08] 2025-06-05 16:32:27,794 | INFO     | ..............................
[2025-06-05 23:49:08] 2025-06-05 16:32:27,794 | INFO     | . Timing measurements:
[2025-06-05 23:49:08] 2025-06-05 16:32:27,794 | INFO     | . get job = 0 s
[2025-06-05 23:49:08] 2025-06-05 16:32:27,794 | INFO     | . initial setup = 7 s
[2025-06-05 23:49:08] 2025-06-05 16:32:27,794 | INFO     | . payload setup = 18 s
[2025-06-05 23:49:08] 2025-06-05 16:32:27,794 | INFO     | . stage-in = 0 s
[2025-06-05 23:49:08] 2025-06-05 16:32:27,795 | INFO     | . payload execution = 18461 s
[2025-06-05 23:49:08] 2025-06-05 16:32:27,795 | INFO     | . stage-out = 3 s
[2025-06-05 23:49:08] 2025-06-05 16:32:27,795 | INFO     | . log creation = 1 s
[2025-06-05 23:49:08] 2025-06-05 16:32:27,795 | INFO     | ..............................
[2025-06-05 23:49:08] 2025-06-05 16:32:28,377 | INFO     | 
[2025-06-05 23:49:08] 2025-06-05 16:32:28,378 | INFO     | job summary report
[2025-06-05 23:49:08] 2025-06-05 16:32:28,378 | INFO     | --------------------------------------------------
[2025-06-05 23:49:08] 2025-06-05 16:32:28,378 | INFO     | PanDA job id: 6668439170
[2025-06-05 23:49:08] 2025-06-05 16:32:28,378 | INFO     | task id: 44871837
[2025-06-05 23:49:08] 2025-06-05 16:32:28,378 | INFO     | errors: (none)
[2025-06-05 23:49:08] 2025-06-05 16:32:28,378 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 23:49:08] 2025-06-05 16:32:28,379 | INFO     | pilot state: finished 
[2025-06-05 23:49:08] 2025-06-05 16:32:28,379 | INFO     | transexitcode: 0
[2025-06-05 23:49:08] 2025-06-05 16:32:28,379 | INFO     | exeerrorcode: 0
[2025-06-05 23:49:08] 2025-06-05 16:32:28,379 | INFO     | exeerrordiag: 
[2025-06-05 23:49:08] 2025-06-05 16:32:28,379 | INFO     | exitcode: 0
[2025-06-05 23:49:08] 2025-06-05 16:32:28,379 | INFO     | exitmsg: OK
[2025-06-05 23:49:08] 2025-06-05 16:32:28,379 | INFO     | cpuconsumptiontime: 69763 s
[2025-06-05 23:49:08] 2025-06-05 16:32:28,379 | INFO     | nevents: 400
[2025-06-05 23:49:08] 2025-06-05 16:32:28,379 | INFO     | neventsw: 0
[2025-06-05 23:49:08] 2025-06-05 16:32:28,380 | INFO     | pid: 27471
[2025-06-05 23:49:08] 2025-06-05 16:32:28,380 | INFO     | pgrp: 27471
[2025-06-05 23:49:08] 2025-06-05 16:32:28,380 | INFO     | corecount: 8
[2025-06-05 23:49:08] 2025-06-05 16:32:28,380 | INFO     | event service: False
[2025-06-05 23:49:08] 2025-06-05 16:32:28,380 | INFO     | sizes: {0: 2397221, 1: 2397420, 2: 2397420, 12: 2397448, 20: 2397682, 23: 2397710, 18484: 2429490, 18488: 2438433, 18490: 2438489, 18581: 2438659}
[2025-06-05 23:49:08] 2025-06-05 16:32:28,380 | INFO     | --------------------------------------------------
[2025-06-05 23:49:08] 2025-06-05 16:32:28,380 | INFO     | 
[2025-06-05 23:49:08] 2025-06-05 16:32:28,380 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2025-06-05 23:49:08] 2025-06-05 16:32:29,019 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 23:49:08] 2025-06-05 16:32:29,019 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 23:49:08] 2025-06-05 16:32:29,019 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 23:49:08] 2025-06-05 16:32:29,020 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 23:49:08] 2025-06-05 16:32:29,020 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 23:49:08] 2025-06-05 16:32:29,020 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 23:49:08] 2025-06-05 16:32:29,020 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 23:49:08] 2025-06-05 16:32:29,020 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 23:49:08] 2025-06-05 16:32:29,020 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 23:49:08] 2025-06-05 16:32:29,020 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 23:49:08] 2025-06-05 16:32:29,020 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 23:49:08] 2025-06-05 16:32:29,020 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 23:49:08] 2025-06-05 16:32:29,020 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 23:49:08] 2025-06-05 16:32:29,020 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 23:49:08] 2025-06-05 16:32:29,021 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 23:49:08] 2025-06-05 16:32:29,021 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 23:49:08] 2025-06-05 16:32:29,021 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 23:49:08] 2025-06-05 16:32:29,021 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 23:49:08] 2025-06-05 16:32:29,021 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 23:49:08] 2025-06-05 16:32:29,021 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 23:49:08] 2025-06-05 16:32:29,021 | INFO     | job 6668439170 has completed (purged errors)
[2025-06-05 23:49:08] 2025-06-05 16:32:29,021 | INFO     | overall cleanup function is called
[2025-06-05 23:49:08] 2025-06-05 16:32:30,033 | INFO     | --- collectZombieJob: --- 10, [27471]
[2025-06-05 23:49:08] 2025-06-05 16:32:30,034 | INFO     | zombie collector waiting for pid 27471
[2025-06-05 23:49:08] 2025-06-05 16:32:30,034 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 23:49:08] 2025-06-05 16:32:30,034 | INFO     | collected zombie processes
[2025-06-05 23:49:08] 2025-06-05 16:32:30,034 | INFO     | will attempt to kill all subprocesses of pid=27471
[2025-06-05 23:49:08] 2025-06-05 16:32:30,142 | INFO     | process IDs to be killed: [27471] (in reverse order)
[2025-06-05 23:49:08] 2025-06-05 16:32:30,739 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 23:49:08] 2025-06-05 16:32:30,739 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 23:49:08] 2025-06-05 16:32:30,743 | INFO     | did not find any defunct processes belonging to 27471
[2025-06-05 23:49:08] 2025-06-05 16:32:30,746 | INFO     | did not find any defunct processes belonging to 27471
[2025-06-05 23:49:08] 2025-06-05 16:32:30,746 | INFO     | ready for new job
[2025-06-05 23:49:08] 2025-06-05 16:32:30,746 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 23:49:08] 2025-06-05 16:32:30,749 | INFO     | **************************************
[2025-06-05 23:49:08] 2025-06-05 16:32:30,749 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 23:49:08] 2025-06-05 16:32:30,749 | INFO     | **************************************
[2025-06-05 23:49:08] 2025-06-05 16:32:30,749 | INFO     | 
[2025-06-05 23:49:08] 2025-06-05 16:32:30,750 | INFO     | pilot is running in a VM
[2025-06-05 23:49:08] 2025-06-05 16:32:30,750 | INFO     | architecture information:
[2025-06-05 23:49:08] 2025-06-05 16:32:30,768 | INFO     | executing command: cat /etc/os-release
[2025-06-05 23:49:08] 2025-06-05 16:32:30,997 | INFO     | cat /etc/os-release:
[2025-06-05 23:49:08] NAME="CentOS Linux"
[2025-06-05 23:49:08] VERSION="7 (Core)"
[2025-06-05 23:49:08] ID="centos"
[2025-06-05 23:49:08] ID_LIKE="rhel fedora"
[2025-06-05 23:49:08] VERSION_ID="7"
[2025-06-05 23:49:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 23:49:08] ANSI_COLOR="0;31"
[2025-06-05 23:49:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 23:49:08] HOME_URL="https://www.centos.org/"
[2025-06-05 23:49:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 23:49:08] 
[2025-06-05 23:49:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 23:49:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 23:49:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 23:49:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 23:49:08] 
[2025-06-05 23:49:08] 2025-06-05 16:32:30,997 | INFO     | **************************************
[2025-06-05 23:49:08] 2025-06-05 16:32:31,501 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2025-06-05 23:49:08] 2025-06-05 16:32:31,689 | INFO     | sufficient remaining disk space (496890806272 B)
[2025-06-05 23:49:08] 2025-06-05 16:32:31,689 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 23:49:08] 2025-06-05 16:32:31,690 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 23:49:08] 2025-06-05 16:32:31,690 | INFO     | update_server=False
[2025-06-05 23:49:08] 2025-06-05 16:32:31,690 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 23:49:08] 2025-06-05 16:32:31,690 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 23:49:08] 2025-06-05 16:32:31,690 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 23:49:08] 2025-06-05 16:32:31,690 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 23:49:08] 2025-06-05 16:32:31,691 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 23:49:08] 2025-06-05 16:32:31,697 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 23:49:08] 2025-06-05 16:32:31,768 | INFO     | all job control threads have been joined
[2025-06-05 23:49:08] 2025-06-05 16:32:31,927 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 23:49:08] 2025-06-05 16:32:31,928 | INFO     | aborting loop
[2025-06-05 23:49:08] 2025-06-05 16:32:32,009 | INFO     | all payload control threads have been joined
[2025-06-05 23:49:08] 2025-06-05 16:32:32,696 | INFO     | [job] retrieve thread has finished
[2025-06-05 23:49:08] 2025-06-05 16:32:32,763 | INFO     | all data control threads have been joined
[2025-06-05 23:49:08] 2025-06-05 16:32:32,775 | INFO     | [job] control thread has finished
[2025-06-05 23:49:08] 2025-06-05 16:32:32,907 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 23:49:08] 2025-06-05 16:32:32,927 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 23:49:08] 2025-06-05 16:32:32,934 | INFO     | [job] job monitor thread has finished
[2025-06-05 23:49:08] 2025-06-05 16:32:33,015 | INFO     | [payload] control thread has finished
[2025-06-05 23:49:08] 2025-06-05 16:32:33,140 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 23:49:08] 2025-06-05 16:32:33,202 | INFO     | [data] copytool_in thread has finished
[2025-06-05 23:49:08] 2025-06-05 16:32:33,278 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 23:49:08] 2025-06-05 16:32:33,282 | INFO     | [payload] failed_post thread has finished
[2025-06-05 23:49:08] 2025-06-05 16:32:33,383 | INFO     | [job] validate thread has finished
[2025-06-05 23:49:08] 2025-06-05 16:32:33,559 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 23:49:08] 2025-06-05 16:32:33,706 | INFO     | [data] copytool_out thread has finished
[2025-06-05 23:49:08] 2025-06-05 16:32:33,725 | INFO     | [payload] validate_post thread has finished
[2025-06-05 23:49:08] 2025-06-05 16:32:33,769 | INFO     | [data] control thread has finished
[2025-06-05 23:49:08] 2025-06-05 16:32:33,933 | INFO     | [job] queue monitor thread has finished
[2025-06-05 23:49:08] 2025-06-05 16:32:37,147 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 23:49:08] 2025-06-05 16:32:41,793 | INFO     | job.realtimelogging is not enabled
[2025-06-05 23:49:08] 2025-06-05 16:32:42,799 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 23:49:08] 2025-06-05 16:32:44,651 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139681597810496)>', '<ExcThread(monitor, started 139681278695168)>']
[2025-06-05 23:49:08] 2025-06-05 16:32:44,768 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 23:49:08] 2025-06-05 16:32:44,769 | INFO     | [monitor] control thread has ended
[2025-06-05 23:49:08] 2025-06-05 16:32:49,676 | INFO     | all workflow threads have been joined
[2025-06-05 23:49:08] 2025-06-05 16:32:49,677 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 23:49:08] 2025-06-05 16:32:49,677 | INFO     | traces error code: 0
[2025-06-05 23:49:08] 2025-06-05 16:32:49,677 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 23:49:08] 2025-06-05 16:32:50,024 [wrapper] ==== pilot stdout END ====
[2025-06-05 23:49:08] 2025-06-05 16:32:50,056 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 23:49:08] 2025-06-05 16:32:50,094 [wrapper] pilotpid: 15042
[2025-06-05 23:49:08] 2025-06-05 16:32:50,187 [wrapper] Pilot exit status: 0
[2025-06-05 23:49:08] 2025-06-05 16:32:50,635 [wrapper] pandaids: 6668439170
[2025-06-05 23:49:08] 2025-06-05 16:32:51,235 [wrapper] cleanup supervisor_pilot 25525 15043
[2025-06-05 23:49:08] 2025-06-05 16:32:51,293 [wrapper] Test setup, not cleaning
[2025-06-05 23:49:08] 2025-06-05 16:32:51,342 [wrapper] apfmon messages muted
[2025-06-05 23:49:08] 2025-06-05 16:32:51,409 [wrapper] ==== wrapper stdout END ====
[2025-06-05 23:49:08] 2025-06-05 16:32:51,447 [wrapper] ==== wrapper stderr END ====
[2025-06-05 23:49:08]  *** Error codes and diagnostics ***
[2025-06-05 23:49:08]     "exeErrorCode": 0,
[2025-06-05 23:49:08]     "exeErrorDiag": "",
[2025-06-05 23:49:08]     "pilotErrorCode": 0,
[2025-06-05 23:49:08]     "pilotErrorDiag": "",
[2025-06-05 23:49:08]  *** Listing of results directory ***
[2025-06-05 23:49:08] total 417092
[2025-06-05 23:49:08] -rw-r--r--. 1 boinc boinc    495897 May 28 13:04 pilot3.tar.gz
[2025-06-05 23:49:08] -rwx------. 1 boinc boinc     37140 May 28 13:18 runpilot2-wrapper.sh
[2025-06-05 23:49:08] -rw-r--r--. 1 boinc boinc      5111 May 28 13:18 queuedata.json
[2025-06-05 23:49:08] -rw-r--r--. 1 boinc boinc       100 Jun  5 13:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 23:49:08] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 13:21 run_atlas
[2025-06-05 23:49:08] -rw-r--r--. 1 boinc boinc       105 Jun  5 13:21 job.xml
[2025-06-05 23:49:08] -rw-r--r--. 2 boinc boinc 221984329 Jun  5 13:21 EVNT.44871834._003257.pool.root.1
[2025-06-05 23:49:08] -rw-r--r--. 1 boinc boinc      6391 Jun  5 13:21 init_data.xml
[2025-06-05 23:49:08] -rw-r--r--. 2 boinc boinc     15093 Jun  5 13:21 start_atlas.sh
[2025-06-05 23:49:08] drwxrwx--x. 2 boinc boinc        68 Jun  5 13:21 shared
[2025-06-05 23:49:08] -rw-r--r--. 2 boinc boinc    508878 Jun  5 13:21 input.tar.gz
[2025-06-05 23:49:08] -rw-r--r--. 1 boinc boinc         0 Jun  5 13:21 boinc_lockfile
[2025-06-05 23:49:08] -rw-r--r--. 1 boinc boinc      2558 Jun  5 13:21 pandaJob.out
[2025-06-05 23:49:08] -rw-------. 1 boinc boinc    982836 Jun  5 13:22 agis_schedconf.cvmfs.json
[2025-06-05 23:49:08] drwx------. 4 boinc boinc      4096 Jun  5 13:22 pilot3
[2025-06-05 23:49:08] -rw-------. 1 boinc boinc 197215302 Jun  5 18:29 HITS.44871837._083506.pool.root.1
[2025-06-05 23:49:08] -rw-r--r--. 1 boinc boinc       530 Jun  5 18:30 boinc_task_state.xml
[2025-06-05 23:49:08] -rw-------. 1 boinc boinc      1015 Jun  5 18:30 memory_monitor_summary.json
[2025-06-05 23:49:08] -rw-------. 1 boinc boinc   1598969 Jun  5 18:30 agis_ddmendpoints.agis.ALL.json
[2025-06-05 23:49:08] -rw-------. 1 boinc boinc    431257 Jun  5 18:30 log.44871837._083506.job.log.tgz.1
[2025-06-05 23:49:08] -rw-------. 1 boinc boinc        95 Jun  5 18:31 pilot_heartbeat.json
[2025-06-05 23:49:08] -rw-------. 1 boinc boinc      7689 Jun  5 18:32 heartbeat.json
[2025-06-05 23:49:08] -rw-------. 1 boinc boinc      4612 Jun  5 18:32 pilotlog.txt
[2025-06-05 23:49:08] -rw-------. 1 boinc boinc   1612712 Jun  5 18:32 log.44871837._083506.job.log.1
[2025-06-05 23:49:08] -rw-------. 1 boinc boinc       357 Jun  5 18:32 output.list
[2025-06-05 23:49:08] -rw-r--r--. 1 boinc boinc       620 Jun  5 18:32 runtime_log
[2025-06-05 23:49:08] -rw-------. 1 boinc boinc   2058240 Jun  5 18:32 result.tar.gz
[2025-06-05 23:49:08] -rw-------. 1 boinc boinc       657 Jun  5 18:32 Xj2MDmFzTe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm60bKDm1CIqWo.diag
[2025-06-05 23:49:08] -rw-r--r--. 1 boinc boinc      8673 Jun  5 18:32 runtime_log.err
[2025-06-05 23:49:08] -rw-r--r--. 1 boinc boinc      8192 Jun  5 23:49 boinc_mmap_file
[2025-06-05 23:49:08] -rw-r--r--. 1 boinc boinc        28 Jun  5 23:49 wrapper_checkpoint.txt
[2025-06-05 23:49:08] -rw-r--r--. 1 boinc boinc     20501 Jun  5 23:49 stderr.txt
[2025-06-05 23:49:08] HITS file was successfully produced:
[2025-06-05 23:49:08] -rw-------. 1 boinc boinc 197215302 Jun  5 18:29 shared/HITS.pool.root.1
[2025-06-05 23:49:08]  *** Contents of shared directory: ***
[2025-06-05 23:49:08] total 411908
[2025-06-05 23:49:08] -rw-r--r--. 2 boinc boinc 221984329 Jun  5 13:21 ATLAS.root_0
[2025-06-05 23:49:08] -rw-r--r--. 2 boinc boinc     15093 Jun  5 13:21 start_atlas.sh
[2025-06-05 23:49:08] -rw-r--r--. 2 boinc boinc    508878 Jun  5 13:21 input.tar.gz
[2025-06-05 23:49:08] -rw-------. 1 boinc boinc 197215302 Jun  5 18:29 HITS.pool.root.1
[2025-06-05 23:49:08] -rw-------. 1 boinc boinc   2058240 Jun  5 18:32 result.tar.gz
23:49:10 (7263): run_atlas exited; CPU time 70010.955902
23:49:10 (7263): called boinc_finish(0)

</stderr_txt>
]]>

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