Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:18:39 (3922676): wrapper (7.7.26015): starting
07:18:39 (3922676): wrapper: running run_atlas (--nthreads 12)
[2025-06-05 07:18:39] Arguments: --nthreads 12
[2025-06-05 07:18:39] Threads: 12
[2025-06-05 07:18:39] Checking for CVMFS
[2025-06-05 07:18:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 07:18:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 07:18:39] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 07:18:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 07:18:39] 2.12.6.0 1448327 24641 414908 146816 1 346 22576158 40960001 9885 16776704 0 114560977 99.747 82886440 34478 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-05 07:18:39] CVMFS is ok
[2025-06-05 07:18:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 07:18:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 07:18:39] Further information can be found at the LHC@home message board.
[2025-06-05 07:18:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 07:18:39] Checking for apptainer binary...
[2025-06-05 07:18:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 07:18:39] Running /usr/bin/apptainer --version
[2025-06-05 07:18:39] apptainer version 1.4.1-1.el9
[2025-06-05 07:18:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 07:18:39] c6-5-37-3.aglt2.org
[2025-06-05 07:18:39] apptainer works
[2025-06-05 07:18:39] Set ATHENA_PROC_NUMBER=12
[2025-06-05 07:18:39] Set ATHENA_CORE_NUMBER=12
[2025-06-05 07:18:39] Starting ATLAS job with PandaID=6669133574
[2025-06-05 07:18:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 08:51:38]  *** The last 200 lines of the pilot log: ***
[2025-06-05 08:51:38]  lfn=log.44871837._093586.job.log.tgz.1
[2025-06-05 08:51:38]  mtime=0
[2025-06-05 08:51:38]  protocol_id=None
[2025-06-05 08:51:38]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-05 08:51:38]  replicas=None
[2025-06-05 08:51:38]  scope=mc23_13p6TeV
[2025-06-05 08:51:38]  status=None
[2025-06-05 08:51:38]  status_code=0
[2025-06-05 08:51:38]  storage_token=
[2025-06-05 08:51:38]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6669133574/log.44871837._093586.job.log.tgz.1
[2025-06-05 08:51:38]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4d/ba/log.44871837._093586.job.log.tgz.1
[2025-06-05 08:51:38]  workdir=None
[2025-06-05 08:51:38] ]
[2025-06-05 08:51:38] 2025-06-05 12:51:11,351 | INFO     | transferring file log.44871837._093586.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6669133574/log.44871837._093586.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-05 08:51:38] 2025-06-05 12:51:11,351 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6669133574/log.44871837._093586.job.log.tgz.1 /tmp/boinchome/slots/0/log.44871837._093586.job
[2025-06-05 08:51:38] 2025-06-05 12:51:11,371 | INFO     | adding to output.list: log.44871837._093586.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4d/ba/log.44871837._093586.job.log.tg
[2025-06-05 08:51:38] 2025-06-05 12:51:11,372 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-05 08:51:38] 2025-06-05 12:51:11,372 | INFO     | summary of transferred files:
[2025-06-05 08:51:38] 2025-06-05 12:51:11,372 | INFO     |  -- lfn=log.44871837._093586.job.log.tgz.1, status_code=0, status=transferred
[2025-06-05 08:51:38] 2025-06-05 12:51:11,372 | INFO     | stage-out finished correctly
[2025-06-05 08:51:38] 2025-06-05 12:51:11,700 | WARNING  | process 3934761 can no longer be monitored (due to stat problems) - aborting
[2025-06-05 08:51:38] 2025-06-05 12:51:11,700 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6669133574/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 08:51:38] 2025-06-05 12:51:11,935 | INFO     | number of running child processes to parent process 3934761: 1
[2025-06-05 08:51:38] 2025-06-05 12:51:11,935 | INFO     | maximum number of monitored processes: 6
[2025-06-05 08:51:38] 2025-06-05 12:51:13,717 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-05 08:51:38] 2025-06-05 12:51:13,996 | INFO     | 5547s have passed since pilot start - server update state is 'RUNNING'
[2025-06-05 08:51:38] 2025-06-05 12:51:14,438 | INFO     | monitor loop #404: job 0:6669133574 is in state 'finished'
[2025-06-05 08:51:38] 2025-06-05 12:51:14,438 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 08:51:38] 2025-06-05 12:51:15,356 | INFO     | job 6669133574 has state=finished
[2025-06-05 08:51:38] 2025-06-05 12:51:15,357 | INFO     | preparing for final server update for job 6669133574 in state='finished'
[2025-06-05 08:51:38] 2025-06-05 12:51:15,357 | INFO     | this job has now completed (state=finished)
[2025-06-05 08:51:38] 2025-06-05 12:51:15,357 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-05 08:51:38] 2025-06-05 12:51:15,357 | INFO     | log transfer has been attempted: DONE
[2025-06-05 08:51:38] 2025-06-05 12:51:15,357 | INFO     | job 6669133574 has finished - writing final server update
[2025-06-05 08:51:38] 2025-06-05 12:51:15,358 | INFO     | total number of processed events: 400 (read)
[2025-06-05 08:51:38] 2025-06-05 12:51:15,373 | INFO     | executing command: lscpu
[2025-06-05 08:51:38] 2025-06-05 12:51:15,445 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 08:51:38] 2025-06-05 12:51:16,943 | INFO     | monitor loop #405: job 0:6669133574 is in state 'finished'
[2025-06-05 08:51:38] 2025-06-05 12:51:16,944 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 08:51:38] 2025-06-05 12:51:19,283 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-05 08:51:38] 2025-06-05 12:51:19,283 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6669133574/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 08:51:38] 2025-06-05 12:51:19,284 | INFO     | extracted standard info from prmon json
[2025-06-05 08:51:38] 2025-06-05 12:51:19,284 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 08:51:38] 2025-06-05 12:51:19,284 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 08:51:38] 2025-06-05 12:51:19,285 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 08:51:38] 2025-06-05 12:51:19,285 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 08:51:38] 2025-06-05 12:51:19,288 | INFO     | fitting pss+swap vs Time
[2025-06-05 08:51:38] 2025-06-05 12:51:19,288 | INFO     | sum of square deviations: 183761585.0
[2025-06-05 08:51:38] 2025-06-05 12:51:19,288 | INFO     | sum of deviations: -10943690787.0
[2025-06-05 08:51:38] 2025-06-05 12:51:19,289 | INFO     | mean x: 1749125190.5
[2025-06-05 08:51:38] 2025-06-05 12:51:19,289 | INFO     | mean y: 2431414.261904762
[2025-06-05 08:51:38] 2025-06-05 12:51:19,289 | INFO     | -- intersect: 104169389010.89163
[2025-06-05 08:51:38] 2025-06-05 12:51:19,289 | INFO     | intersect: 104169389010.89163
[2025-06-05 08:51:38] 2025-06-05 12:51:19,289 | INFO     | chi2: 0.17940500490553052
[2025-06-05 08:51:38] 2025-06-05 12:51:19,289 | INFO     | -- intersect: 104169389010.89163
[2025-06-05 08:51:38] 2025-06-05 12:51:19,289 | INFO     | current memory leak: -59.55 B/s (using 84 data points, chi2=0.18)
[2025-06-05 08:51:38] 2025-06-05 12:51:19,290 | INFO     | ..............................
[2025-06-05 08:51:38] 2025-06-05 12:51:19,290 | INFO     | . Timing measurements:
[2025-06-05 08:51:38] 2025-06-05 12:51:19,290 | INFO     | . get job = 0 s
[2025-06-05 08:51:38] 2025-06-05 12:51:19,290 | INFO     | . initial setup = 2 s
[2025-06-05 08:51:38] 2025-06-05 12:51:19,290 | INFO     | . payload setup = 5 s
[2025-06-05 08:51:38] 2025-06-05 12:51:19,290 | INFO     | . stage-in = 0 s
[2025-06-05 08:51:38] 2025-06-05 12:51:19,290 | INFO     | . payload execution = 5516 s
[2025-06-05 08:51:38] 2025-06-05 12:51:19,290 | INFO     | . stage-out = 0 s
[2025-06-05 08:51:38] 2025-06-05 12:51:19,290 | INFO     | . log creation = 0 s
[2025-06-05 08:51:38] 2025-06-05 12:51:19,290 | INFO     | ..............................
[2025-06-05 08:51:38] 2025-06-05 12:51:19,383 | INFO     | 
[2025-06-05 08:51:38] 2025-06-05 12:51:19,383 | INFO     | job summary report
[2025-06-05 08:51:38] 2025-06-05 12:51:19,384 | INFO     | --------------------------------------------------
[2025-06-05 08:51:38] 2025-06-05 12:51:19,384 | INFO     | PanDA job id: 6669133574
[2025-06-05 08:51:38] 2025-06-05 12:51:19,384 | INFO     | task id: 44871837
[2025-06-05 08:51:38] 2025-06-05 12:51:19,384 | INFO     | errors: (none)
[2025-06-05 08:51:38] 2025-06-05 12:51:19,384 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 08:51:38] 2025-06-05 12:51:19,384 | INFO     | pilot state: finished 
[2025-06-05 08:51:38] 2025-06-05 12:51:19,384 | INFO     | transexitcode: 0
[2025-06-05 08:51:38] 2025-06-05 12:51:19,384 | INFO     | exeerrorcode: 0
[2025-06-05 08:51:38] 2025-06-05 12:51:19,384 | INFO     | exeerrordiag: 
[2025-06-05 08:51:38] 2025-06-05 12:51:19,384 | INFO     | exitcode: 0
[2025-06-05 08:51:38] 2025-06-05 12:51:19,384 | INFO     | exitmsg: OK
[2025-06-05 08:51:38] 2025-06-05 12:51:19,384 | INFO     | cpuconsumptiontime: 49018 s
[2025-06-05 08:51:38] 2025-06-05 12:51:19,384 | INFO     | nevents: 400
[2025-06-05 08:51:38] 2025-06-05 12:51:19,384 | INFO     | neventsw: 0
[2025-06-05 08:51:38] 2025-06-05 12:51:19,385 | INFO     | pid: 3934761
[2025-06-05 08:51:38] 2025-06-05 12:51:19,385 | INFO     | pgrp: 3934761
[2025-06-05 08:51:38] 2025-06-05 12:51:19,385 | INFO     | corecount: 12
[2025-06-05 08:51:38] 2025-06-05 12:51:19,385 | INFO     | event service: False
[2025-06-05 08:51:38] 2025-06-05 12:51:19,385 | INFO     | sizes: {0: 2397390, 4: 2397596, 11: 2397624, 5526: 2424123, 5527: 2433064, 5530: 2433120, 5535: 2433418}
[2025-06-05 08:51:38] 2025-06-05 12:51:19,385 | INFO     | --------------------------------------------------
[2025-06-05 08:51:38] 2025-06-05 12:51:19,385 | INFO     | 
[2025-06-05 08:51:38] 2025-06-05 12:51:19,385 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 08:51:38] 2025-06-05 12:51:19,402 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 08:51:38] 2025-06-05 12:51:19,403 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 08:51:38] 2025-06-05 12:51:19,403 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 08:51:38] 2025-06-05 12:51:19,403 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 08:51:38] 2025-06-05 12:51:19,403 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 08:51:38] 2025-06-05 12:51:19,403 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 08:51:38] 2025-06-05 12:51:19,403 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 08:51:38] 2025-06-05 12:51:19,403 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 08:51:38] 2025-06-05 12:51:19,403 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 08:51:38] 2025-06-05 12:51:19,403 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 08:51:38] 2025-06-05 12:51:19,403 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 08:51:38] 2025-06-05 12:51:19,404 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 08:51:38] 2025-06-05 12:51:19,404 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 08:51:38] 2025-06-05 12:51:19,404 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 08:51:38] 2025-06-05 12:51:19,404 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 08:51:38] 2025-06-05 12:51:19,404 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 08:51:38] 2025-06-05 12:51:19,404 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 08:51:38] 2025-06-05 12:51:19,404 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 08:51:38] 2025-06-05 12:51:19,404 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 08:51:38] 2025-06-05 12:51:19,404 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 08:51:38] 2025-06-05 12:51:19,404 | INFO     | job 6669133574 has completed (purged errors)
[2025-06-05 08:51:38] 2025-06-05 12:51:19,404 | INFO     | overall cleanup function is called
[2025-06-05 08:51:38] 2025-06-05 12:51:20,412 | INFO     | --- collectZombieJob: --- 10, [3934761]
[2025-06-05 08:51:38] 2025-06-05 12:51:20,412 | INFO     | zombie collector waiting for pid 3934761
[2025-06-05 08:51:38] 2025-06-05 12:51:20,413 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 08:51:38] 2025-06-05 12:51:20,413 | INFO     | collected zombie processes
[2025-06-05 08:51:38] 2025-06-05 12:51:20,413 | INFO     | will attempt to kill all subprocesses of pid=3934761
[2025-06-05 08:51:38] 2025-06-05 12:51:20,613 | INFO     | process IDs to be killed: [3934761] (in reverse order)
[2025-06-05 08:51:38] 2025-06-05 12:51:20,685 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 08:51:38] 2025-06-05 12:51:20,685 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 08:51:38] 2025-06-05 12:51:20,691 | INFO     | did not find any defunct processes belonging to 3934761
[2025-06-05 08:51:38] 2025-06-05 12:51:20,698 | INFO     | did not find any defunct processes belonging to 3934761
[2025-06-05 08:51:38] 2025-06-05 12:51:20,698 | INFO     | ready for new job
[2025-06-05 08:51:38] 2025-06-05 12:51:20,698 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 08:51:38] 2025-06-05 12:51:20,700 | INFO     | **************************************
[2025-06-05 08:51:38] 2025-06-05 12:51:20,700 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 08:51:38] 2025-06-05 12:51:20,700 | INFO     | **************************************
[2025-06-05 08:51:38] 2025-06-05 12:51:20,700 | INFO     | 
[2025-06-05 08:51:38] 2025-06-05 12:51:20,715 | INFO     | architecture information:
[2025-06-05 08:51:38] 2025-06-05 12:51:20,716 | INFO     | executing command: cat /etc/os-release
[2025-06-05 08:51:38] 2025-06-05 12:51:20,727 | INFO     | cat /etc/os-release:
[2025-06-05 08:51:38] NAME="CentOS Linux"
[2025-06-05 08:51:38] VERSION="7 (Core)"
[2025-06-05 08:51:38] ID="centos"
[2025-06-05 08:51:38] ID_LIKE="rhel fedora"
[2025-06-05 08:51:38] VERSION_ID="7"
[2025-06-05 08:51:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 08:51:38] ANSI_COLOR="0;31"
[2025-06-05 08:51:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 08:51:38] HOME_URL="https://www.centos.org/"
[2025-06-05 08:51:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 08:51:38] 
[2025-06-05 08:51:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 08:51:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 08:51:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 08:51:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 08:51:38] 
[2025-06-05 08:51:38] 2025-06-05 12:51:20,727 | INFO     | **************************************
[2025-06-05 08:51:38] 2025-06-05 12:51:21,229 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 08:51:38] 2025-06-05 12:51:21,248 | INFO     | sufficient remaining disk space (75305582592 B)
[2025-06-05 08:51:38] 2025-06-05 12:51:21,248 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 08:51:38] 2025-06-05 12:51:21,249 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 08:51:38] 2025-06-05 12:51:21,249 | INFO     | update_server=False
[2025-06-05 08:51:38] 2025-06-05 12:51:21,249 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 08:51:38] 2025-06-05 12:51:21,249 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 08:51:38] 2025-06-05 12:51:21,249 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 08:51:38] 2025-06-05 12:51:21,250 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 08:51:38] 2025-06-05 12:51:21,251 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 08:51:38] 2025-06-05 12:51:21,251 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 08:51:38] 2025-06-05 12:51:21,251 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 08:51:38] 2025-06-05 12:51:21,250 | INFO     | aborting loop
[2025-06-05 08:51:38] 2025-06-05 12:51:21,384 | INFO     | all payload control threads have been joined
[2025-06-05 08:51:38] 2025-06-05 12:51:21,494 | INFO     | all job control threads have been joined
[2025-06-05 08:51:38] 2025-06-05 12:51:21,548 | INFO     | all data control threads have been joined
[2025-06-05 08:51:38] 2025-06-05 12:51:21,977 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 08:51:38] 2025-06-05 12:51:22,253 | INFO     | [job] retrieve thread has finished
[2025-06-05 08:51:38] 2025-06-05 12:51:22,255 | INFO     | [job] queue monitor thread has finished
[2025-06-05 08:51:38] 2025-06-05 12:51:22,256 | INFO     | [job] job monitor thread has finished
[2025-06-05 08:51:38] 2025-06-05 12:51:22,390 | INFO     | [payload] control thread has finished
[2025-06-05 08:51:38] 2025-06-05 12:51:22,500 | INFO     | [job] control thread has finished
[2025-06-05 08:51:38] 2025-06-05 12:51:22,553 | INFO     | [data] control thread has finished
[2025-06-05 08:51:38] 2025-06-05 12:51:22,616 | INFO     | [payload] failed_post thread has finished
[2025-06-05 08:51:38] 2025-06-05 12:51:22,800 | INFO     | [payload] validate_post thread has finished
[2025-06-05 08:51:38] 2025-06-05 12:51:23,041 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 08:51:38] 2025-06-05 12:51:23,098 | INFO     | [job] validate thread has finished
[2025-06-05 08:51:38] 2025-06-05 12:51:23,178 | INFO     | [data] copytool_in thread has finished
[2025-06-05 08:51:38] 2025-06-05 12:51:23,227 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 08:51:38] 2025-06-05 12:51:23,443 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 08:51:38] 2025-06-05 12:51:23,982 | INFO     | [data] copytool_out thread has finished
[2025-06-05 08:51:38] 2025-06-05 12:51:24,319 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 08:51:38] 2025-06-05 12:51:28,325 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 08:51:38] 2025-06-05 12:51:31,523 | INFO     | job.realtimelogging is not enabled
[2025-06-05 08:51:38] 2025-06-05 12:51:32,528 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 08:51:38] 2025-06-05 12:51:33,616 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140020062603072)>', '<ExcThread(monitor, started 140019708696320)>']
[2025-06-05 08:51:38] 2025-06-05 12:51:34,317 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 08:51:38] 2025-06-05 12:51:34,318 | INFO     | [monitor] control thread has ended
[2025-06-05 08:51:38] 2025-06-05 12:51:38,641 | INFO     | all workflow threads have been joined
[2025-06-05 08:51:38] 2025-06-05 12:51:38,642 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 08:51:38] 2025-06-05 12:51:38,642 | INFO     | traces error code: 0
[2025-06-05 08:51:38] 2025-06-05 12:51:38,642 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 08:51:38] 2025-06-05 12:51:38,849 [wrapper] ==== pilot stdout END ====
[2025-06-05 08:51:38] 2025-06-05 12:51:38,852 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 08:51:38] 2025-06-05 12:51:38,855 [wrapper] pilotpid: 3927258
[2025-06-05 08:51:38] 2025-06-05 12:51:38,858 [wrapper] Pilot exit status: 0
[2025-06-05 08:51:38] 2025-06-05 12:51:38,869 [wrapper] pandaids: 6669133574
[2025-06-05 08:51:38] 2025-06-05 12:51:38,919 [wrapper] cleanup supervisor_pilot 4127755 3927259
[2025-06-05 08:51:38] 2025-06-05 12:51:38,921 [wrapper] Test setup, not cleaning
[2025-06-05 08:51:38] 2025-06-05 12:51:38,924 [wrapper] apfmon messages muted
[2025-06-05 08:51:38] 2025-06-05 12:51:38,927 [wrapper] ==== wrapper stdout END ====
[2025-06-05 08:51:38] 2025-06-05 12:51:38,930 [wrapper] ==== wrapper stderr END ====
[2025-06-05 08:51:38]  *** Error codes and diagnostics ***
[2025-06-05 08:51:38]     "exeErrorCode": 0,
[2025-06-05 08:51:38]     "exeErrorDiag": "",
[2025-06-05 08:51:38]     "pilotErrorCode": 0,
[2025-06-05 08:51:38]     "pilotErrorDiag": "",
[2025-06-05 08:51:38]  *** Listing of results directory ***
[2025-06-05 08:51:38] total 408548
[2025-06-05 08:51:38] -rw-r--r--. 1 boincer umatlas    495897 May 28 22:05 pilot3.tar.gz
[2025-06-05 08:51:38] -rw-r--r--. 1 boincer umatlas      5111 May 28 22:23 queuedata.json
[2025-06-05 08:51:38] -rwx------. 1 boincer umatlas     37140 May 28 22:23 runpilot2-wrapper.sh
[2025-06-05 08:51:38] -rw-r--r--. 1 boincer umatlas       100 Jun  5 07:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 08:51:38] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  5 07:18 run_atlas
[2025-06-05 08:51:38] -rw-r--r--. 1 boincer umatlas       105 Jun  5 07:18 job.xml
[2025-06-05 08:51:38] -rw-r--r--. 2 boincer umatlas 221570752 Jun  5 07:18 EVNT.44871834._003638.pool.root.1
[2025-06-05 08:51:38] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 07:18 start_atlas.sh
[2025-06-05 08:51:38] drwxrwx--x. 2 boincer umatlas      4096 Jun  5 07:18 shared
[2025-06-05 08:51:38] -rw-r--r--. 2 boincer umatlas    508872 Jun  5 07:18 input.tar.gz
[2025-06-05 08:51:38] -rw-r--r--. 1 boincer umatlas         0 Jun  5 07:18 boinc_lockfile
[2025-06-05 08:51:38] -rw-r--r--. 1 boincer umatlas      2558 Jun  5 07:18 pandaJob.out
[2025-06-05 08:51:38] -rw-------. 1 boincer umatlas    982836 Jun  5 07:18 agis_schedconf.cvmfs.json
[2025-06-05 08:51:39] -rw-------. 1 boincer umatlas   1598969 Jun  5 07:18 agis_ddmendpoints.agis.ALL.json
[2025-06-05 08:51:39] drwx------. 4 boincer umatlas      4096 Jun  5 07:18 pilot3
[2025-06-05 08:51:39] -rw-r--r--. 1 boincer umatlas      6841 Jun  5 08:46 init_data.xml
[2025-06-05 08:51:39] -rw-------. 1 boincer umatlas        95 Jun  5 08:50 pilot_heartbeat.json
[2025-06-05 08:51:39] -rw-------. 1 boincer umatlas 191164374 Jun  5 08:50 HITS.44871837._093586.pool.root.1
[2025-06-05 08:51:39] -rw-r--r--. 1 boincer umatlas       529 Jun  5 08:50 boinc_task_state.xml
[2025-06-05 08:51:39] -rw-------. 1 boincer umatlas      1038 Jun  5 08:51 memory_monitor_summary.json
[2025-06-05 08:51:39] -rw-r--r--. 1 boincer umatlas      8192 Jun  5 08:51 boinc_mmap_file
[2025-06-05 08:51:39] -rw-r--r--. 1 boincer umatlas        27 Jun  5 08:51 wrapper_checkpoint.txt
[2025-06-05 08:51:39] -rw-------. 1 boincer umatlas    360547 Jun  5 08:51 log.44871837._093586.job.log.tgz.1
[2025-06-05 08:51:39] -rw-------. 1 boincer umatlas      7716 Jun  5 08:51 heartbeat.json
[2025-06-05 08:51:39] -rw-------. 1 boincer umatlas      4548 Jun  5 08:51 pilotlog.txt
[2025-06-05 08:51:39] -rw-------. 1 boincer umatlas    534674 Jun  5 08:51 log.44871837._093586.job.log.1
[2025-06-05 08:51:39] -rw-------. 1 boincer umatlas       357 Jun  5 08:51 output.list
[2025-06-05 08:51:39] -rw-r--r--. 1 boincer umatlas       620 Jun  5 08:51 runtime_log
[2025-06-05 08:51:39] -rw-------. 1 boincer umatlas    911360 Jun  5 08:51 result.tar.gz
[2025-06-05 08:51:39] -rw-------. 1 boincer umatlas       654 Jun  5 08:51 WDUMDmk6he7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmsadKDmKVZXDm.diag
[2025-06-05 08:51:39] -rw-r--r--. 1 boincer umatlas      8666 Jun  5 08:51 runtime_log.err
[2025-06-05 08:51:39] -rw-r--r--. 1 boincer umatlas     21611 Jun  5 08:51 stderr.txt
[2025-06-05 08:51:39] HITS file was successfully produced:
[2025-06-05 08:51:39] -rw-------. 1 boincer umatlas 191164374 Jun  5 08:50 shared/HITS.pool.root.1
[2025-06-05 08:51:39]  *** Contents of shared directory: ***
[2025-06-05 08:51:39] total 404480
[2025-06-05 08:51:39] -rw-r--r--. 2 boincer umatlas 221570752 Jun  5 07:18 ATLAS.root_0
[2025-06-05 08:51:39] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 07:18 start_atlas.sh
[2025-06-05 08:51:39] -rw-r--r--. 2 boincer umatlas    508872 Jun  5 07:18 input.tar.gz
[2025-06-05 08:51:39] -rw-------. 1 boincer umatlas 191164374 Jun  5 08:50 HITS.pool.root.1
[2025-06-05 08:51:39] -rw-------. 1 boincer umatlas    911360 Jun  5 08:51 result.tar.gz
08:51:40 (3922676): run_atlas exited; CPU time 49070.947263
08:51:40 (3922676): called boinc_finish(0)

</stderr_txt>
]]>

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