Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:03:51 (3682881): wrapper (7.7.26015): starting
07:03:51 (3682881): wrapper: running run_atlas (--nthreads 12)
[2025-06-05 07:03:51] Arguments: --nthreads 12
[2025-06-05 07:03:51] Threads: 12
[2025-06-05 07:03:51] Checking for CVMFS
[2025-06-05 07:03:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 07:03:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 07:03:51] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 07:03:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 07:03:51] 2.12.6.0 5109 32859 468156 146816 1 748 31820678 32935937 13313 16776704 0 129704835 99.671 114513419 32482 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-05 07:03:51] CVMFS is ok
[2025-06-05 07:03:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 07:03:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 07:03:51] Further information can be found at the LHC@home message board.
[2025-06-05 07:03:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 07:03:51] Checking for apptainer binary...
[2025-06-05 07:03:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 07:03:51] Running /usr/bin/apptainer --version
[2025-06-05 07:03:51] apptainer version 1.4.1-1.el9
[2025-06-05 07:03:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 07:03:51] c6-2-29-2.aglt2.org
[2025-06-05 07:03:51] apptainer works
[2025-06-05 07:03:51] Set ATHENA_PROC_NUMBER=12
[2025-06-05 07:03:51] Set ATHENA_CORE_NUMBER=12
[2025-06-05 07:03:51] Starting ATLAS job with PandaID=6668326268
[2025-06-05 07:03:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 08:41:39]  *** The last 200 lines of the pilot log: ***
[2025-06-05 08:41:39]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-05 08:41:39]  replicas=None
[2025-06-05 08:41:39]  scope=mc23_13p6TeV
[2025-06-05 08:41:39]  status=None
[2025-06-05 08:41:39]  status_code=0
[2025-06-05 08:41:39]  storage_token=
[2025-06-05 08:41:39]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6668326268/log.44871837._082672.job.log.tgz.1
[2025-06-05 08:41:39]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a0/8a/log.44871837._082672.job.log.tgz.1
[2025-06-05 08:41:39]  workdir=None
[2025-06-05 08:41:39] ]
[2025-06-05 08:41:39] 2025-06-05 12:41:11,831 | INFO     | transferring file log.44871837._082672.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6668326268/log.44871837._082672.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-05 08:41:39] 2025-06-05 12:41:11,832 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6668326268/log.44871837._082672.job.log.tgz.1 /tmp/boinchome/slots/0/log.44871837._082672.job
[2025-06-05 08:41:39] 2025-06-05 12:41:11,852 | INFO     | adding to output.list: log.44871837._082672.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a0/8a/log.44871837._082672.job.log.tg
[2025-06-05 08:41:39] 2025-06-05 12:41:11,853 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-05 08:41:39] 2025-06-05 12:41:11,853 | INFO     | summary of transferred files:
[2025-06-05 08:41:39] 2025-06-05 12:41:11,854 | INFO     |  -- lfn=log.44871837._082672.job.log.tgz.1, status_code=0, status=transferred
[2025-06-05 08:41:39] 2025-06-05 12:41:11,854 | INFO     | stage-out finished correctly
[2025-06-05 08:41:39] 2025-06-05 12:41:12,222 | WARNING  | process 3693179 can no longer be monitored (due to stat problems) - aborting
[2025-06-05 08:41:39] 2025-06-05 12:41:12,222 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6668326268/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 08:41:39] 2025-06-05 12:41:12,370 | INFO     | number of running child processes to parent process 3693179: 1
[2025-06-05 08:41:39] 2025-06-05 12:41:12,370 | INFO     | maximum number of monitored processes: 6
[2025-06-05 08:41:39] 2025-06-05 12:41:14,872 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-05 08:41:39] 2025-06-05 12:41:14,877 | INFO     | monitor loop #412: job 0:6668326268 is in state 'finished'
[2025-06-05 08:41:39] 2025-06-05 12:41:14,888 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 08:41:39] 2025-06-05 12:41:16,562 | INFO     | job 6668326268 has state=finished
[2025-06-05 08:41:39] 2025-06-05 12:41:16,563 | INFO     | preparing for final server update for job 6668326268 in state='finished'
[2025-06-05 08:41:39] 2025-06-05 12:41:16,563 | INFO     | this job has now completed (state=finished)
[2025-06-05 08:41:39] 2025-06-05 12:41:16,563 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-05 08:41:39] 2025-06-05 12:41:16,563 | INFO     | log transfer has been attempted: DONE
[2025-06-05 08:41:39] 2025-06-05 12:41:16,563 | INFO     | job 6668326268 has finished - writing final server update
[2025-06-05 08:41:39] 2025-06-05 12:41:16,563 | INFO     | total number of processed events: 400 (read)
[2025-06-05 08:41:39] 2025-06-05 12:41:16,578 | INFO     | executing command: lscpu
[2025-06-05 08:41:39] 2025-06-05 12:41:16,651 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 08:41:39] 2025-06-05 12:41:17,401 | INFO     | monitor loop #413: job 0:6668326268 is in state 'finished'
[2025-06-05 08:41:39] 2025-06-05 12:41:17,402 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 08:41:39] 2025-06-05 12:41:18,358 | INFO     | PID=3686707 has CPU usage=10.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-05 08:41:39] 2025-06-05 12:41:18,358 | INFO     | .. there are 15 such processes running
[2025-06-05 08:41:39] 2025-06-05 12:41:19,904 | INFO     | monitor loop #414: job 0:6668326268 is in state 'finished'
[2025-06-05 08:41:39] 2025-06-05 12:41:19,904 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 08:41:39] 2025-06-05 12:41:20,439 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-05 08:41:39] 2025-06-05 12:41:20,439 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6668326268/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 08:41:39] 2025-06-05 12:41:20,440 | INFO     | extracted standard info from prmon json
[2025-06-05 08:41:39] 2025-06-05 12:41:20,440 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 08:41:39] 2025-06-05 12:41:20,440 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 08:41:39] 2025-06-05 12:41:20,441 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 08:41:39] 2025-06-05 12:41:20,441 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 08:41:39] 2025-06-05 12:41:20,443 | INFO     | fitting pss+swap vs Time
[2025-06-05 08:41:39] 2025-06-05 12:41:20,443 | INFO     | sum of square deviations: 218577275.95505637
[2025-06-05 08:41:39] 2025-06-05 12:41:20,444 | INFO     | sum of deviations: -19163091549.61798
[2025-06-05 08:41:39] 2025-06-05 12:41:20,444 | INFO     | mean x: 1749124455.022472
[2025-06-05 08:41:39] 2025-06-05 12:41:20,444 | INFO     | mean y: 2485904.808988764
[2025-06-05 08:41:39] 2025-06-05 12:41:20,444 | INFO     | -- intersect: 153351601986.58942
[2025-06-05 08:41:39] 2025-06-05 12:41:20,444 | INFO     | intersect: 153351601986.58942
[2025-06-05 08:41:39] 2025-06-05 12:41:20,444 | INFO     | chi2: 0.19908795416996072
[2025-06-05 08:41:39] 2025-06-05 12:41:20,444 | INFO     | -- intersect: 153351601986.58942
[2025-06-05 08:41:39] 2025-06-05 12:41:20,444 | INFO     | current memory leak: -87.67 B/s (using 89 data points, chi2=0.20)
[2025-06-05 08:41:39] 2025-06-05 12:41:20,445 | INFO     | ..............................
[2025-06-05 08:41:39] 2025-06-05 12:41:20,445 | INFO     | . Timing measurements:
[2025-06-05 08:41:39] 2025-06-05 12:41:20,445 | INFO     | . get job = 0 s
[2025-06-05 08:41:39] 2025-06-05 12:41:20,445 | INFO     | . initial setup = 2 s
[2025-06-05 08:41:39] 2025-06-05 12:41:20,445 | INFO     | . payload setup = 6 s
[2025-06-05 08:41:39] 2025-06-05 12:41:20,445 | INFO     | . stage-in = 0 s
[2025-06-05 08:41:39] 2025-06-05 12:41:20,445 | INFO     | . payload execution = 5805 s
[2025-06-05 08:41:39] 2025-06-05 12:41:20,445 | INFO     | . stage-out = 0 s
[2025-06-05 08:41:39] 2025-06-05 12:41:20,445 | INFO     | . log creation = 0 s
[2025-06-05 08:41:39] 2025-06-05 12:41:20,446 | INFO     | ..............................
[2025-06-05 08:41:39] 2025-06-05 12:41:20,551 | INFO     | 
[2025-06-05 08:41:39] 2025-06-05 12:41:20,551 | INFO     | job summary report
[2025-06-05 08:41:39] 2025-06-05 12:41:20,551 | INFO     | --------------------------------------------------
[2025-06-05 08:41:39] 2025-06-05 12:41:20,551 | INFO     | PanDA job id: 6668326268
[2025-06-05 08:41:39] 2025-06-05 12:41:20,551 | INFO     | task id: 44871837
[2025-06-05 08:41:39] 2025-06-05 12:41:20,551 | INFO     | errors: (none)
[2025-06-05 08:41:39] 2025-06-05 12:41:20,551 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 08:41:39] 2025-06-05 12:41:20,551 | INFO     | pilot state: finished 
[2025-06-05 08:41:39] 2025-06-05 12:41:20,551 | INFO     | transexitcode: 0
[2025-06-05 08:41:39] 2025-06-05 12:41:20,551 | INFO     | exeerrorcode: 0
[2025-06-05 08:41:39] 2025-06-05 12:41:20,551 | INFO     | exeerrordiag: 
[2025-06-05 08:41:39] 2025-06-05 12:41:20,551 | INFO     | exitcode: 0
[2025-06-05 08:41:39] 2025-06-05 12:41:20,552 | INFO     | exitmsg: OK
[2025-06-05 08:41:39] 2025-06-05 12:41:20,552 | INFO     | cpuconsumptiontime: 49168 s
[2025-06-05 08:41:39] 2025-06-05 12:41:20,552 | INFO     | nevents: 400
[2025-06-05 08:41:39] 2025-06-05 12:41:20,552 | INFO     | neventsw: 0
[2025-06-05 08:41:39] 2025-06-05 12:41:20,552 | INFO     | pid: 3693179
[2025-06-05 08:41:39] 2025-06-05 12:41:20,552 | INFO     | pgrp: 3693179
[2025-06-05 08:41:39] 2025-06-05 12:41:20,552 | INFO     | corecount: 12
[2025-06-05 08:41:39] 2025-06-05 12:41:20,552 | INFO     | event service: False
[2025-06-05 08:41:39] 2025-06-05 12:41:20,552 | INFO     | sizes: {0: 2397221, 1: 2397420, 4: 2397626, 11: 2397654, 5815: 2424378, 5816: 2433319, 5819: 2433503, 5824: 2433673}
[2025-06-05 08:41:39] 2025-06-05 12:41:20,552 | INFO     | --------------------------------------------------
[2025-06-05 08:41:39] 2025-06-05 12:41:20,552 | INFO     | 
[2025-06-05 08:41:39] 2025-06-05 12:41:20,552 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 08:41:39] 2025-06-05 12:41:20,570 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 08:41:39] 2025-06-05 12:41:20,571 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 08:41:39] 2025-06-05 12:41:20,571 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 08:41:39] 2025-06-05 12:41:20,571 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 08:41:39] 2025-06-05 12:41:20,571 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 08:41:39] 2025-06-05 12:41:20,571 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 08:41:39] 2025-06-05 12:41:20,571 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 08:41:39] 2025-06-05 12:41:20,571 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 08:41:39] 2025-06-05 12:41:20,571 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 08:41:39] 2025-06-05 12:41:20,571 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 08:41:39] 2025-06-05 12:41:20,571 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 08:41:39] 2025-06-05 12:41:20,572 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 08:41:39] 2025-06-05 12:41:20,572 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 08:41:39] 2025-06-05 12:41:20,572 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 08:41:39] 2025-06-05 12:41:20,572 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 08:41:39] 2025-06-05 12:41:20,572 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 08:41:39] 2025-06-05 12:41:20,572 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 08:41:39] 2025-06-05 12:41:20,572 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 08:41:39] 2025-06-05 12:41:20,572 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 08:41:39] 2025-06-05 12:41:20,572 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 08:41:39] 2025-06-05 12:41:20,572 | INFO     | job 6668326268 has completed (purged errors)
[2025-06-05 08:41:39] 2025-06-05 12:41:20,572 | INFO     | overall cleanup function is called
[2025-06-05 08:41:39] 2025-06-05 12:41:21,580 | INFO     | --- collectZombieJob: --- 10, [3693179]
[2025-06-05 08:41:39] 2025-06-05 12:41:21,581 | INFO     | zombie collector waiting for pid 3693179
[2025-06-05 08:41:39] 2025-06-05 12:41:21,581 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 08:41:39] 2025-06-05 12:41:21,582 | INFO     | collected zombie processes
[2025-06-05 08:41:39] 2025-06-05 12:41:21,582 | INFO     | will attempt to kill all subprocesses of pid=3693179
[2025-06-05 08:41:39] 2025-06-05 12:41:21,777 | INFO     | process IDs to be killed: [3693179] (in reverse order)
[2025-06-05 08:41:39] 2025-06-05 12:41:21,858 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 08:41:39] 2025-06-05 12:41:21,859 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 08:41:39] 2025-06-05 12:41:21,869 | INFO     | did not find any defunct processes belonging to 3693179
[2025-06-05 08:41:39] 2025-06-05 12:41:21,879 | INFO     | did not find any defunct processes belonging to 3693179
[2025-06-05 08:41:39] 2025-06-05 12:41:21,879 | INFO     | ready for new job
[2025-06-05 08:41:39] 2025-06-05 12:41:21,879 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 08:41:39] 2025-06-05 12:41:21,881 | INFO     | **************************************
[2025-06-05 08:41:39] 2025-06-05 12:41:21,881 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 08:41:39] 2025-06-05 12:41:21,881 | INFO     | **************************************
[2025-06-05 08:41:39] 2025-06-05 12:41:21,881 | INFO     | 
[2025-06-05 08:41:39] 2025-06-05 12:41:21,896 | INFO     | architecture information:
[2025-06-05 08:41:39] 2025-06-05 12:41:21,897 | INFO     | executing command: cat /etc/os-release
[2025-06-05 08:41:39] 2025-06-05 12:41:21,909 | INFO     | cat /etc/os-release:
[2025-06-05 08:41:39] NAME="CentOS Linux"
[2025-06-05 08:41:39] VERSION="7 (Core)"
[2025-06-05 08:41:39] ID="centos"
[2025-06-05 08:41:39] ID_LIKE="rhel fedora"
[2025-06-05 08:41:39] VERSION_ID="7"
[2025-06-05 08:41:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 08:41:39] ANSI_COLOR="0;31"
[2025-06-05 08:41:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 08:41:39] HOME_URL="https://www.centos.org/"
[2025-06-05 08:41:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 08:41:39] 
[2025-06-05 08:41:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 08:41:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 08:41:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 08:41:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 08:41:39] 
[2025-06-05 08:41:39] 2025-06-05 12:41:21,909 | INFO     | **************************************
[2025-06-05 08:41:39] 2025-06-05 12:41:22,412 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 08:41:39] 2025-06-05 12:41:22,428 | INFO     | sufficient remaining disk space (76223086592 B)
[2025-06-05 08:41:39] 2025-06-05 12:41:22,428 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 08:41:39] 2025-06-05 12:41:22,429 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 08:41:39] 2025-06-05 12:41:22,429 | INFO     | update_server=False
[2025-06-05 08:41:39] 2025-06-05 12:41:22,429 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 08:41:39] 2025-06-05 12:41:22,429 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 08:41:39] 2025-06-05 12:41:22,429 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 08:41:39] 2025-06-05 12:41:22,430 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 08:41:39] 2025-06-05 12:41:22,430 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 08:41:39] 2025-06-05 12:41:22,430 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 08:41:39] 2025-06-05 12:41:22,460 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 08:41:39] 2025-06-05 12:41:22,824 | INFO     | all data control threads have been joined
[2025-06-05 08:41:39] 2025-06-05 12:41:23,062 | INFO     | all job control threads have been joined
[2025-06-05 08:41:39] 2025-06-05 12:41:23,412 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 08:41:39] 2025-06-05 12:41:23,413 | INFO     | aborting loop
[2025-06-05 08:41:39] 2025-06-05 12:41:23,433 | INFO     | [job] retrieve thread has finished
[2025-06-05 08:41:39] 2025-06-05 12:41:23,434 | INFO     | [job] queue monitor thread has finished
[2025-06-05 08:41:39] 2025-06-05 12:41:23,628 | INFO     | [job] validate thread has finished
[2025-06-05 08:41:39] 2025-06-05 12:41:23,670 | INFO     | [payload] failed_post thread has finished
[2025-06-05 08:41:39] 2025-06-05 12:41:23,681 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 08:41:39] 2025-06-05 12:41:23,829 | INFO     | [data] control thread has finished
[2025-06-05 08:41:39] 2025-06-05 12:41:23,878 | INFO     | all payload control threads have been joined
[2025-06-05 08:41:39] 2025-06-05 12:41:23,890 | INFO     | [data] copytool_in thread has finished
[2025-06-05 08:41:39] 2025-06-05 12:41:24,029 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 08:41:39] 2025-06-05 12:41:24,043 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 08:41:39] 2025-06-05 12:41:24,067 | INFO     | [job] control thread has finished
[2025-06-05 08:41:39] 2025-06-05 12:41:24,417 | INFO     | [job] job monitor thread has finished
[2025-06-05 08:41:39] 2025-06-05 12:41:24,465 | INFO     | [data] copytool_out thread has finished
[2025-06-05 08:41:39] 2025-06-05 12:41:24,883 | INFO     | [payload] control thread has finished
[2025-06-05 08:41:39] 2025-06-05 12:41:25,031 | INFO     | [payload] validate_post thread has finished
[2025-06-05 08:41:39] 2025-06-05 12:41:25,478 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 08:41:39] 2025-06-05 12:41:29,484 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 08:41:39] 2025-06-05 12:41:32,482 | INFO     | job.realtimelogging is not enabled
[2025-06-05 08:41:39] 2025-06-05 12:41:33,487 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 08:41:39] 2025-06-05 12:41:34,215 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139908587554624)>', '<ExcThread(monitor, started 139907821467392)>']
[2025-06-05 08:41:39] 2025-06-05 12:41:34,488 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 08:41:39] 2025-06-05 12:41:34,489 | INFO     | [monitor] control thread has ended
[2025-06-05 08:41:39] 2025-06-05 12:41:39,239 | INFO     | all workflow threads have been joined
[2025-06-05 08:41:39] 2025-06-05 12:41:39,239 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 08:41:39] 2025-06-05 12:41:39,240 | INFO     | traces error code: 0
[2025-06-05 08:41:39] 2025-06-05 12:41:39,240 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 08:41:39] 2025-06-05 12:41:39,389 [wrapper] ==== pilot stdout END ====
[2025-06-05 08:41:39] 2025-06-05 12:41:39,393 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 08:41:39] 2025-06-05 12:41:39,396 [wrapper] pilotpid: 3686707
[2025-06-05 08:41:39] 2025-06-05 12:41:39,399 [wrapper] Pilot exit status: 0
[2025-06-05 08:41:39] 2025-06-05 12:41:39,412 [wrapper] pandaids: 6668326268
[2025-06-05 08:41:39] 2025-06-05 12:41:39,483 [wrapper] cleanup supervisor_pilot 4006740 3686708
[2025-06-05 08:41:39] 2025-06-05 12:41:39,486 [wrapper] Test setup, not cleaning
[2025-06-05 08:41:39] 2025-06-05 12:41:39,489 [wrapper] apfmon messages muted
[2025-06-05 08:41:39] 2025-06-05 12:41:39,491 [wrapper] ==== wrapper stdout END ====
[2025-06-05 08:41:39] 2025-06-05 12:41:39,493 [wrapper] ==== wrapper stderr END ====
[2025-06-05 08:41:39]  *** Error codes and diagnostics ***
[2025-06-05 08:41:39]     "exeErrorCode": 0,
[2025-06-05 08:41:39]     "exeErrorDiag": "",
[2025-06-05 08:41:39]     "pilotErrorCode": 0,
[2025-06-05 08:41:39]     "pilotErrorDiag": "",
[2025-06-05 08:41:39]  *** Listing of results directory ***
[2025-06-05 08:41:39] total 420536
[2025-06-05 08:41:39] -rw-r--r--. 1 boincer umatlas    495897 May 28 05:57 pilot3.tar.gz
[2025-06-05 08:41:39] -rw-r--r--. 1 boincer umatlas      5111 May 28 06:18 queuedata.json
[2025-06-05 08:41:39] -rwx------. 1 boincer umatlas     37140 May 28 06:18 runpilot2-wrapper.sh
[2025-06-05 08:41:39] -rw-r--r--. 1 boincer umatlas       100 Jun  5 07:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 08:41:39] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  5 07:03 run_atlas
[2025-06-05 08:41:39] -rw-r--r--. 1 boincer umatlas       105 Jun  5 07:03 job.xml
[2025-06-05 08:41:39] -rw-r--r--. 2 boincer umatlas 228648323 Jun  5 07:03 EVNT.44871834._003226.pool.root.1
[2025-06-05 08:41:39] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 07:03 start_atlas.sh
[2025-06-05 08:41:39] drwxrwx--x. 2 boincer umatlas      4096 Jun  5 07:03 shared
[2025-06-05 08:41:39] -rw-r--r--. 2 boincer umatlas    508875 Jun  5 07:03 input.tar.gz
[2025-06-05 08:41:39] -rw-r--r--. 1 boincer umatlas         0 Jun  5 07:03 boinc_lockfile
[2025-06-05 08:41:39] -rw-r--r--. 1 boincer umatlas      2559 Jun  5 07:03 pandaJob.out
[2025-06-05 08:41:39] -rw-------. 1 boincer umatlas    982836 Jun  5 07:03 agis_schedconf.cvmfs.json
[2025-06-05 08:41:39] -rw-------. 1 boincer umatlas   1598969 Jun  5 07:03 agis_ddmendpoints.agis.ALL.json
[2025-06-05 08:41:39] drwx------. 4 boincer umatlas      4096 Jun  5 07:04 pilot3
[2025-06-05 08:41:39] -rw-r--r--. 1 boincer umatlas      6842 Jun  5 08:36 init_data.xml
[2025-06-05 08:41:39] -rw-------. 1 boincer umatlas 196265857 Jun  5 08:40 HITS.44871837._082672.pool.root.1
[2025-06-05 08:41:39] -rw-------. 1 boincer umatlas        95 Jun  5 08:40 pilot_heartbeat.json
[2025-06-05 08:41:39] -rw-r--r--. 1 boincer umatlas       529 Jun  5 08:40 boinc_task_state.xml
[2025-06-05 08:41:39] -rw-------. 1 boincer umatlas      1040 Jun  5 08:41 memory_monitor_summary.json
[2025-06-05 08:41:39] -rw-------. 1 boincer umatlas    390260 Jun  5 08:41 log.44871837._082672.job.log.tgz.1
[2025-06-05 08:41:39] -rw-------. 1 boincer umatlas      7724 Jun  5 08:41 heartbeat.json
[2025-06-05 08:41:39] -rw-r--r--. 1 boincer umatlas        27 Jun  5 08:41 wrapper_checkpoint.txt
[2025-06-05 08:41:39] -rw-------. 1 boincer umatlas      4548 Jun  5 08:41 pilotlog.txt
[2025-06-05 08:41:39] -rw-r--r--. 1 boincer umatlas      8192 Jun  5 08:41 boinc_mmap_file
[2025-06-05 08:41:39] -rw-------. 1 boincer umatlas    554630 Jun  5 08:41 log.44871837._082672.job.log.1
[2025-06-05 08:41:39] -rw-------. 1 boincer umatlas       357 Jun  5 08:41 output.list
[2025-06-05 08:41:39] -rw-r--r--. 1 boincer umatlas       620 Jun  5 08:41 runtime_log
[2025-06-05 08:41:39] -rw-------. 1 boincer umatlas    962560 Jun  5 08:41 result.tar.gz
[2025-06-05 08:41:39] -rw-r--r--. 1 boincer umatlas      8666 Jun  5 08:41 runtime_log.err
[2025-06-05 08:41:39] -rw-------. 1 boincer umatlas       654 Jun  5 08:41 BEuMDmB3Se7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm4tbKDmiUuFnn.diag
[2025-06-05 08:41:39] -rw-r--r--. 1 boincer umatlas     21953 Jun  5 08:41 stderr.txt
[2025-06-05 08:41:39] HITS file was successfully produced:
[2025-06-05 08:41:39] -rw-------. 1 boincer umatlas 196265857 Jun  5 08:40 shared/HITS.pool.root.1
[2025-06-05 08:41:39]  *** Contents of shared directory: ***
[2025-06-05 08:41:39] total 416420
[2025-06-05 08:41:39] -rw-r--r--. 2 boincer umatlas 228648323 Jun  5 07:03 ATLAS.root_0
[2025-06-05 08:41:39] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 07:03 start_atlas.sh
[2025-06-05 08:41:39] -rw-r--r--. 2 boincer umatlas    508875 Jun  5 07:03 input.tar.gz
[2025-06-05 08:41:39] -rw-------. 1 boincer umatlas 196265857 Jun  5 08:40 HITS.pool.root.1
[2025-06-05 08:41:39] -rw-------. 1 boincer umatlas    962560 Jun  5 08:41 result.tar.gz
08:41:40 (3682881): run_atlas exited; CPU time 49266.029234
08:41:40 (3682881): called boinc_finish(0)

</stderr_txt>
]]>

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