Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:06:27 (20108): wrapper (7.7.26015): starting
06:06:27 (20108): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 06:06:27] Arguments: --nthreads 8
[2025-06-05 06:06:27] Threads: 8
[2025-06-05 06:06:27] Checking for CVMFS
[2025-06-05 06:06:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 06:06:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 06:06:27] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 06:06:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 06:06:27] 2.11.2.0 2843 36980 77112 146814 0 56 14798517 20275200 1 130560 0 12714862 99.979 7264498 8229 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-05 06:06:27] CVMFS is ok
[2025-06-05 06:06:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 06:06:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 06:06:27] Further information can be found at the LHC@home message board.
[2025-06-05 06:06:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 06:06:27] Checking for apptainer binary...
[2025-06-05 06:06:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 06:06:27] Running /usr/bin/apptainer --version
[2025-06-05 06:06:28] apptainer version 1.3.2-1.el7
[2025-06-05 06:06:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 06:06:29] c-204-23.aglt2.org
[2025-06-05 06:06:29] apptainer works
[2025-06-05 06:06:29] Set ATHENA_PROC_NUMBER=8
[2025-06-05 06:06:29] Set ATHENA_CORE_NUMBER=8
[2025-06-05 06:06:29] Starting ATLAS job with PandaID=6667928316
[2025-06-05 06:06:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
08:29:32 (7050): wrapper (7.7.26015): starting
08:29:32 (7050): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 08:29:32] Arguments: --nthreads 8
[2025-06-05 08:29:32] Threads: 8
[2025-06-05 08:29:32] This job has been restarted, cleaning up previous attempt
[2025-06-05 08:29:32] Checking for CVMFS
[2025-06-05 08:29:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 08:29:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 08:29:32] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 08:29:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 08:29:32] 2.11.2.0 2843 37123 77296 146819 2 8 14883136 20275201 1 130560 0 12799914 99.979 7269764 8233 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-05 08:29:32] CVMFS is ok
[2025-06-05 08:29:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 08:29:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 08:29:32] Further information can be found at the LHC@home message board.
[2025-06-05 08:29:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 08:29:32] Checking for apptainer binary...
[2025-06-05 08:29:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 08:29:32] Running /usr/bin/apptainer --version
[2025-06-05 08:29:32] apptainer version 1.3.2-1.el7
[2025-06-05 08:29:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 08:29:34] c-204-23.aglt2.org
[2025-06-05 08:29:34] apptainer works
[2025-06-05 08:29:34] Set ATHENA_PROC_NUMBER=8
[2025-06-05 08:29:34] Set ATHENA_CORE_NUMBER=8
[2025-06-05 08:29:34] Starting ATLAS job with PandaID=6667928316
[2025-06-05 08:29:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 11:13:52]  *** The last 200 lines of the pilot log: ***
[2025-06-05 11:13:52] 2025-06-05 15:13:32,350 | INFO     | extracted standard info from prmon json
[2025-06-05 11:13:52] 2025-06-05 15:13:32,350 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 11:13:52] 2025-06-05 15:13:32,350 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 11:13:52] 2025-06-05 15:13:32,350 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 11:13:52] 2025-06-05 15:13:32,351 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 11:13:52] 2025-06-05 15:13:32,354 | INFO     | fitting pss+swap vs Time
[2025-06-05 11:13:52] 2025-06-05 15:13:32,355 | INFO     | sum of square deviations: 1294014960.0
[2025-06-05 11:13:52] 2025-06-05 15:13:32,356 | INFO     | sum of deviations: -21197497316.0
[2025-06-05 11:13:52] 2025-06-05 15:13:32,356 | INFO     | mean x: 1749131503.0
[2025-06-05 11:13:52] 2025-06-05 15:13:32,356 | INFO     | mean y: 2526620.0807453417
[2025-06-05 11:13:52] 2025-06-05 15:13:32,357 | INFO     | -- intersect: 28655371823.79736
[2025-06-05 11:13:52] 2025-06-05 15:13:32,357 | INFO     | intersect: 28655371823.79736
[2025-06-05 11:13:52] 2025-06-05 15:13:32,357 | INFO     | chi2: 2.477262119254528
[2025-06-05 11:13:52] 2025-06-05 15:13:32,358 | INFO     | sum of square deviations: 1177156955.0
[2025-06-05 11:13:52] 2025-06-05 15:13:32,359 | INFO     | sum of deviations: -9585266720.0
[2025-06-05 11:13:52] 2025-06-05 15:13:32,359 | INFO     | mean x: 1749131350.5
[2025-06-05 11:13:52] 2025-06-05 15:13:32,359 | INFO     | mean y: 2541425.5897435895
[2025-06-05 11:13:52] 2025-06-05 15:13:32,359 | INFO     | -- intersect: 14245239012.89347
[2025-06-05 11:13:52] 2025-06-05 15:13:32,360 | INFO     | intersect: 14245239012.89347
[2025-06-05 11:13:52] 2025-06-05 15:13:32,360 | INFO     | chi2: 1.713782009216343
[2025-06-05 11:13:52] 2025-06-05 15:13:32,360 | INFO     | current chi2=1.713782009216343 (change=30.819512562035058 %)
[2025-06-05 11:13:52] 2025-06-05 15:13:32,361 | INFO     | sum of square deviations: 1067554900.0
[2025-06-05 11:13:52] 2025-06-05 15:13:32,361 | INFO     | sum of deviations: -8798959396.000002
[2025-06-05 11:13:52] 2025-06-05 15:13:32,362 | INFO     | mean x: 1749131198.0
[2025-06-05 11:13:52] 2025-06-05 15:13:32,362 | INFO     | mean y: 2542520.331125828
[2025-06-05 11:13:52] 2025-06-05 15:13:32,362 | INFO     | -- intersect: 14419163519.849596
[2025-06-05 11:13:52] 2025-06-05 15:13:32,362 | INFO     | intersect: 14419163519.849596
[2025-06-05 11:13:52] 2025-06-05 15:13:32,362 | INFO     | chi2: 1.7133900805671085
[2025-06-05 11:13:52] 2025-06-05 15:13:32,362 | INFO     | current chi2=1.7133900805671085 (change=0.02286922415609008 %)
[2025-06-05 11:13:52] 2025-06-05 15:13:32,362 | INFO     | right removable region: 150
[2025-06-05 11:13:52] 2025-06-05 15:13:32,363 | INFO     | sum of square deviations: 1177156955.0
[2025-06-05 11:13:52] 2025-06-05 15:13:32,364 | INFO     | sum of deviations: -45909815211.5
[2025-06-05 11:13:52] 2025-06-05 15:13:32,364 | INFO     | mean x: 1749131655.5
[2025-06-05 11:13:52] 2025-06-05 15:13:32,364 | INFO     | mean y: 2558409.8653846155
[2025-06-05 11:13:52] 2025-06-05 15:13:32,364 | INFO     | -- intersect: 68219724135.73079
[2025-06-05 11:13:52] 2025-06-05 15:13:32,364 | INFO     | intersect: 68219724135.73079
[2025-06-05 11:13:52] 2025-06-05 15:13:32,364 | INFO     | chi2: 0.9736549019964834
[2025-06-05 11:13:52] 2025-06-05 15:13:32,365 | INFO     | current chi2=0.9736549019964834 (change=60.69633106530199 %)
[2025-06-05 11:13:52] 2025-06-05 15:13:32,365 | INFO     | sum of square deviations: 1067554900.0
[2025-06-05 11:13:52] 2025-06-05 15:13:32,366 | INFO     | sum of deviations: -45001030105.0
[2025-06-05 11:13:52] 2025-06-05 15:13:32,366 | INFO     | mean x: 1749131808.0
[2025-06-05 11:13:52] 2025-06-05 15:13:32,366 | INFO     | mean y: 2557065.6622516555
[2025-06-05 11:13:52] 2025-06-05 15:13:32,366 | INFO     | -- intersect: 73734346549.67012
[2025-06-05 11:13:52] 2025-06-05 15:13:32,366 | INFO     | intersect: 73734346549.67012
[2025-06-05 11:13:52] 2025-06-05 15:13:32,366 | INFO     | chi2: 0.9501351136954971
[2025-06-05 11:13:52] 2025-06-05 15:13:32,366 | INFO     | current chi2=0.9501351136954971 (change=2.4156185372002863 %)
[2025-06-05 11:13:52] 2025-06-05 15:13:32,367 | INFO     | left removable region: 20
[2025-06-05 11:13:52] 2025-06-05 15:13:32,367 | INFO     | sum of square deviations: 681212772.5
[2025-06-05 11:13:52] 2025-06-05 15:13:32,367 | INFO     | sum of deviations: -23258840792.0
[2025-06-05 11:13:52] 2025-06-05 15:13:32,368 | INFO     | mean x: 1749131777.5
[2025-06-05 11:13:52] 2025-06-05 15:13:32,368 | INFO     | mean y: 2561603.5692307693
[2025-06-05 11:13:52] 2025-06-05 15:13:32,368 | INFO     | -- intersect: 59723663701.81338
[2025-06-05 11:13:52] 2025-06-05 15:13:32,368 | INFO     | intersect: 59723663701.81338
[2025-06-05 11:13:52] 2025-06-05 15:13:32,368 | INFO     | chi2: 0.13881723407038965
[2025-06-05 11:13:52] 2025-06-05 15:13:32,368 | INFO     | -- intersect: 59723663701.81338
[2025-06-05 11:13:52] 2025-06-05 15:13:32,369 | INFO     | current memory leak: -34.14 B/s (using 130 data points, chi2=0.14)
[2025-06-05 11:13:52] 2025-06-05 15:13:32,369 | INFO     | ..............................
[2025-06-05 11:13:52] 2025-06-05 15:13:32,369 | INFO     | . Timing measurements:
[2025-06-05 11:13:52] 2025-06-05 15:13:32,369 | INFO     | . get job = 0 s
[2025-06-05 11:13:52] 2025-06-05 15:13:32,369 | INFO     | . initial setup = 1 s
[2025-06-05 11:13:52] 2025-06-05 15:13:32,369 | INFO     | . payload setup = 12 s
[2025-06-05 11:13:52] 2025-06-05 15:13:32,370 | INFO     | . stage-in = 0 s
[2025-06-05 11:13:52] 2025-06-05 15:13:32,370 | INFO     | . payload execution = 9780 s
[2025-06-05 11:13:52] 2025-06-05 15:13:32,370 | INFO     | . stage-out = 2 s
[2025-06-05 11:13:52] 2025-06-05 15:13:32,370 | INFO     | . log creation = 0 s
[2025-06-05 11:13:52] 2025-06-05 15:13:32,370 | INFO     | ..............................
[2025-06-05 11:13:52] 2025-06-05 15:13:32,602 | INFO     | 
[2025-06-05 11:13:52] 2025-06-05 15:13:32,602 | INFO     | job summary report
[2025-06-05 11:13:52] 2025-06-05 15:13:32,602 | INFO     | --------------------------------------------------
[2025-06-05 11:13:52] 2025-06-05 15:13:32,603 | INFO     | PanDA job id: 6667928316
[2025-06-05 11:13:52] 2025-06-05 15:13:32,603 | INFO     | task id: 44871837
[2025-06-05 11:13:52] 2025-06-05 15:13:32,603 | INFO     | errors: (none)
[2025-06-05 11:13:52] 2025-06-05 15:13:32,603 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 11:13:52] 2025-06-05 15:13:32,603 | INFO     | pilot state: finished 
[2025-06-05 11:13:52] 2025-06-05 15:13:32,603 | INFO     | transexitcode: 0
[2025-06-05 11:13:52] 2025-06-05 15:13:32,604 | INFO     | exeerrorcode: 0
[2025-06-05 11:13:52] 2025-06-05 15:13:32,604 | INFO     | exeerrordiag: 
[2025-06-05 11:13:52] 2025-06-05 15:13:32,604 | INFO     | exitcode: 0
[2025-06-05 11:13:52] 2025-06-05 15:13:32,604 | INFO     | exitmsg: OK
[2025-06-05 11:13:52] 2025-06-05 15:13:32,604 | INFO     | cpuconsumptiontime: 74167 s
[2025-06-05 11:13:52] 2025-06-05 15:13:32,605 | INFO     | nevents: 400
[2025-06-05 11:13:52] 2025-06-05 15:13:32,605 | INFO     | neventsw: 0
[2025-06-05 11:13:52] 2025-06-05 15:13:32,605 | INFO     | pid: 17355
[2025-06-05 11:13:52] 2025-06-05 15:13:32,605 | INFO     | pgrp: 17355
[2025-06-05 11:13:52] 2025-06-05 15:13:32,605 | INFO     | corecount: 8
[2025-06-05 11:13:52] 2025-06-05 15:13:32,605 | INFO     | event service: False
[2025-06-05 11:13:52] 2025-06-05 15:13:32,606 | INFO     | sizes: {0: 2397392, 6: 2397598, 11: 2397626, 9796: 2425915, 9799: 2434856, 9800: 2434912, 9807: 2435210}
[2025-06-05 11:13:52] 2025-06-05 15:13:32,606 | INFO     | --------------------------------------------------
[2025-06-05 11:13:52] 2025-06-05 15:13:32,606 | INFO     | 
[2025-06-05 11:13:52] 2025-06-05 15:13:32,606 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 11:13:52] 2025-06-05 15:13:32,638 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 11:13:52] 2025-06-05 15:13:32,638 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 11:13:52] 2025-06-05 15:13:32,639 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 11:13:52] 2025-06-05 15:13:32,639 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 11:13:52] 2025-06-05 15:13:32,639 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 11:13:52] 2025-06-05 15:13:32,639 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 11:13:52] 2025-06-05 15:13:32,639 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 11:13:52] 2025-06-05 15:13:32,640 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 11:13:52] 2025-06-05 15:13:32,640 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 11:13:52] 2025-06-05 15:13:32,640 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 11:13:52] 2025-06-05 15:13:32,640 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 11:13:52] 2025-06-05 15:13:32,640 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 11:13:52] 2025-06-05 15:13:32,640 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 11:13:52] 2025-06-05 15:13:32,641 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 11:13:52] 2025-06-05 15:13:32,641 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 11:13:52] 2025-06-05 15:13:32,641 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 11:13:52] 2025-06-05 15:13:32,641 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 11:13:52] 2025-06-05 15:13:32,641 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 11:13:52] 2025-06-05 15:13:32,641 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 11:13:52] 2025-06-05 15:13:32,642 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 11:13:52] 2025-06-05 15:13:32,642 | INFO     | job 6667928316 has completed (purged errors)
[2025-06-05 11:13:52] 2025-06-05 15:13:32,642 | INFO     | overall cleanup function is called
[2025-06-05 11:13:52] 2025-06-05 15:13:33,650 | INFO     | --- collectZombieJob: --- 10, [17355]
[2025-06-05 11:13:52] 2025-06-05 15:13:33,651 | INFO     | zombie collector waiting for pid 17355
[2025-06-05 11:13:52] 2025-06-05 15:13:33,651 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 11:13:52] 2025-06-05 15:13:33,651 | INFO     | collected zombie processes
[2025-06-05 11:13:52] 2025-06-05 15:13:33,651 | INFO     | will attempt to kill all subprocesses of pid=17355
[2025-06-05 11:13:52] 2025-06-05 15:13:33,746 | INFO     | process IDs to be killed: [17355] (in reverse order)
[2025-06-05 11:13:52] 2025-06-05 15:13:33,808 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 11:13:52] 2025-06-05 15:13:33,809 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 11:13:52] 2025-06-05 15:13:33,813 | INFO     | did not find any defunct processes belonging to 17355
[2025-06-05 11:13:52] 2025-06-05 15:13:33,816 | INFO     | did not find any defunct processes belonging to 17355
[2025-06-05 11:13:52] 2025-06-05 15:13:33,816 | INFO     | ready for new job
[2025-06-05 11:13:52] 2025-06-05 15:13:33,816 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 11:13:52] 2025-06-05 15:13:33,818 | INFO     | **************************************
[2025-06-05 11:13:52] 2025-06-05 15:13:33,818 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 11:13:52] 2025-06-05 15:13:33,818 | INFO     | **************************************
[2025-06-05 11:13:52] 2025-06-05 15:13:33,818 | INFO     | 
[2025-06-05 11:13:52] 2025-06-05 15:13:33,819 | INFO     | architecture information:
[2025-06-05 11:13:52] 2025-06-05 15:13:33,819 | INFO     | executing command: cat /etc/os-release
[2025-06-05 11:13:52] 2025-06-05 15:13:33,839 | INFO     | cat /etc/os-release:
[2025-06-05 11:13:52] NAME="CentOS Linux"
[2025-06-05 11:13:52] VERSION="7 (Core)"
[2025-06-05 11:13:52] ID="centos"
[2025-06-05 11:13:52] ID_LIKE="rhel fedora"
[2025-06-05 11:13:52] VERSION_ID="7"
[2025-06-05 11:13:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 11:13:52] ANSI_COLOR="0;31"
[2025-06-05 11:13:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 11:13:52] HOME_URL="https://www.centos.org/"
[2025-06-05 11:13:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 11:13:52] 
[2025-06-05 11:13:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 11:13:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 11:13:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 11:13:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 11:13:52] 
[2025-06-05 11:13:52] 2025-06-05 15:13:33,839 | INFO     | **************************************
[2025-06-05 11:13:52] 2025-06-05 15:13:34,343 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 11:13:52] 2025-06-05 15:13:34,364 | INFO     | sufficient remaining disk space (18572378112 B)
[2025-06-05 11:13:52] 2025-06-05 15:13:34,365 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 11:13:52] 2025-06-05 15:13:34,365 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 11:13:52] 2025-06-05 15:13:34,365 | INFO     | update_server=False
[2025-06-05 11:13:52] 2025-06-05 15:13:34,366 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 11:13:52] 2025-06-05 15:13:34,366 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 11:13:52] 2025-06-05 15:13:34,367 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 11:13:52] 2025-06-05 15:13:34,367 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 11:13:52] 2025-06-05 15:13:34,367 | INFO     | aborting loop
[2025-06-05 11:13:52] 2025-06-05 15:13:34,368 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 11:13:52] 2025-06-05 15:13:34,368 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 11:13:52] 2025-06-05 15:13:34,369 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 11:13:52] 2025-06-05 15:13:35,187 | INFO     | all data control threads have been joined
[2025-06-05 11:13:52] 2025-06-05 15:13:35,193 | INFO     | all payload control threads have been joined
[2025-06-05 11:13:52] 2025-06-05 15:13:35,372 | INFO     | [job] retrieve thread has finished
[2025-06-05 11:13:52] 2025-06-05 15:13:35,372 | INFO     | [job] queue monitor thread has finished
[2025-06-05 11:13:52] 2025-06-05 15:13:35,374 | INFO     | [job] job monitor thread has finished
[2025-06-05 11:13:52] 2025-06-05 15:13:35,459 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 11:13:52] 2025-06-05 15:13:35,720 | INFO     | [job] validate thread has finished
[2025-06-05 11:13:52] 2025-06-05 15:13:35,877 | INFO     | [payload] validate_post thread has finished
[2025-06-05 11:13:52] 2025-06-05 15:13:35,906 | INFO     | all job control threads have been joined
[2025-06-05 11:13:52] 2025-06-05 15:13:36,095 | INFO     | [data] copytool_in thread has finished
[2025-06-05 11:13:52] 2025-06-05 15:13:36,191 | INFO     | [data] control thread has finished
[2025-06-05 11:13:52] 2025-06-05 15:13:36,200 | INFO     | [payload] control thread has finished
[2025-06-05 11:13:52] 2025-06-05 15:13:36,282 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 11:13:52] 2025-06-05 15:13:36,403 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 11:13:52] 2025-06-05 15:13:36,437 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 11:13:52] 2025-06-05 15:13:36,484 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 11:13:52] 2025-06-05 15:13:36,873 | INFO     | [payload] failed_post thread has finished
[2025-06-05 11:13:52] 2025-06-05 15:13:36,912 | INFO     | [job] control thread has finished
[2025-06-05 11:13:52] 2025-06-05 15:13:37,465 | INFO     | [data] copytool_out thread has finished
[2025-06-05 11:13:52] 2025-06-05 15:13:40,288 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 11:13:52] 2025-06-05 15:13:44,723 | INFO     | job.realtimelogging is not enabled
[2025-06-05 11:13:52] 2025-06-05 15:13:45,723 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 11:13:52] 2025-06-05 15:13:47,492 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139872251389760)>', '<ExcThread(monitor, started 139871515571968)>']
[2025-06-05 11:13:52] 2025-06-05 15:13:48,441 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 11:13:52] 2025-06-05 15:13:48,441 | INFO     | [monitor] control thread has ended
[2025-06-05 11:13:52] 2025-06-05 15:13:52,494 | INFO     | all workflow threads have been joined
[2025-06-05 11:13:52] 2025-06-05 15:13:52,494 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 11:13:52] 2025-06-05 15:13:52,495 | INFO     | traces error code: 0
[2025-06-05 11:13:52] 2025-06-05 15:13:52,495 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 11:13:52] 2025-06-05 15:13:52,602 [wrapper] ==== pilot stdout END ====
[2025-06-05 11:13:52] 2025-06-05 15:13:52,607 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 11:13:52] 2025-06-05 15:13:52,612 [wrapper] pilotpid: 10664
[2025-06-05 11:13:52] 2025-06-05 15:13:52,616 [wrapper] Pilot exit status: 0
[2025-06-05 11:13:52] 2025-06-05 15:13:52,636 [wrapper] pandaids: 6667928316 6667928316
[2025-06-05 11:13:52] 2025-06-05 15:13:52,681 [wrapper] cleanup supervisor_pilot 21526 10665
[2025-06-05 11:13:52] 2025-06-05 15:13:52,686 [wrapper] Test setup, not cleaning
[2025-06-05 11:13:52] 2025-06-05 15:13:52,690 [wrapper] apfmon messages muted
[2025-06-05 11:13:52] 2025-06-05 15:13:52,695 [wrapper] ==== wrapper stdout END ====
[2025-06-05 11:13:52] 2025-06-05 15:13:52,699 [wrapper] ==== wrapper stderr END ====
[2025-06-05 11:13:52]  *** Error codes and diagnostics ***
[2025-06-05 11:13:52]     "exeErrorCode": 0,
[2025-06-05 11:13:52]     "exeErrorDiag": "",
[2025-06-05 11:13:52]     "pilotErrorCode": 0,
[2025-06-05 11:13:52]     "pilotErrorDiag": "",
[2025-06-05 11:13:52]  *** Listing of results directory ***
[2025-06-05 11:13:52] total 637840
[2025-06-05 11:13:52] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-06-05 11:13:52] -rw-r--r-- 1 boincer umatlas    495897 May 27 23:41 pilot3.tar.gz
[2025-06-05 11:13:52] -rw-r--r-- 1 boincer umatlas      5111 May 28 00:05 queuedata.json
[2025-06-05 11:13:52] -rwx------ 1 boincer umatlas     37140 May 28 00:05 runpilot2-wrapper.sh
[2025-06-05 11:13:52] -rw-r--r-- 1 boincer umatlas       100 Jun  5 06:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 11:13:52] -rwxr-xr-x 1 boincer umatlas      7986 Jun  5 06:06 run_atlas
[2025-06-05 11:13:52] -rw-r--r-- 1 boincer umatlas       105 Jun  5 06:06 job.xml
[2025-06-05 11:13:52] -rw-r--r-- 3 boincer umatlas 226471617 Jun  5 06:06 EVNT.44871834._003068.pool.root.1
[2025-06-05 11:13:52] -rw-r--r-- 3 boincer umatlas 226471617 Jun  5 06:06 ATLAS.root_0
[2025-06-05 11:13:52] -rw-r--r-- 2 boincer umatlas     15093 Jun  5 06:06 start_atlas.sh
[2025-06-05 11:13:52] drwxrwx--x 2 boincer umatlas      4096 Jun  5 06:06 shared
[2025-06-05 11:13:52] -rw-r--r-- 2 boincer umatlas    508879 Jun  5 06:06 input.tar.gz
[2025-06-05 11:13:52] -rw-r--r-- 1 boincer umatlas         0 Jun  5 06:06 boinc_lockfile
[2025-06-05 11:13:52] -rw-r--r-- 1 boincer umatlas      2559 Jun  5 08:29 pandaJob.out
[2025-06-05 11:13:52] -rw------- 1 boincer umatlas    983210 Jun  5 08:29 agis_schedconf.cvmfs.json
[2025-06-05 11:13:52] -rw------- 1 boincer umatlas 193909243 Jun  5 11:12 HITS.44871837._078475.pool.root.1
[2025-06-05 11:13:52] -rw-r--r-- 1 boincer umatlas       532 Jun  5 11:13 boinc_task_state.xml
[2025-06-05 11:13:52] -rw------- 1 boincer umatlas        96 Jun  5 11:13 pilot_heartbeat.json
[2025-06-05 11:13:52] -rw-r--r-- 1 boincer umatlas      5906 Jun  5 11:13 init_data.xml
[2025-06-05 11:13:52] -rw------- 1 boincer umatlas      1049 Jun  5 11:13 memory_monitor_summary.json
[2025-06-05 11:13:52] -rw------- 1 boincer umatlas   1598969 Jun  5 11:13 agis_ddmendpoints.agis.ALL.json
[2025-06-05 11:13:52] -rw------- 1 boincer umatlas    347735 Jun  5 11:13 log.44871837._078475.job.log.tgz.1
[2025-06-05 11:13:52] -rw-r--r-- 1 boincer umatlas        29 Jun  5 11:13 wrapper_checkpoint.txt
[2025-06-05 11:13:52] -rw-r--r-- 1 boincer umatlas      8192 Jun  5 11:13 boinc_mmap_file
[2025-06-05 11:13:52] -rw------- 1 boincer umatlas      7752 Jun  5 11:13 heartbeat.json
[2025-06-05 11:13:52] -rw------- 1 boincer umatlas      4548 Jun  5 11:13 pilotlog.txt
[2025-06-05 11:13:52] -rw------- 1 boincer umatlas    881699 Jun  5 11:13 log.44871837._078475.job.log.1
[2025-06-05 11:13:52] -rw------- 1 boincer umatlas       357 Jun  5 11:13 output.list
[2025-06-05 11:13:52] -rw-r--r-- 1 boincer umatlas       620 Jun  5 11:13 runtime_log
[2025-06-05 11:13:52] -rw------- 1 boincer umatlas   1249280 Jun  5 11:13 result.tar.gz
[2025-06-05 11:13:52] -rw------- 1 boincer umatlas       785 Jun  5 11:13 SyRMDmJENe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmOEbKDmCifCAn.diag
[2025-06-05 11:13:52] -rw-r--r-- 1 boincer umatlas      8744 Jun  5 11:13 runtime_log.err
[2025-06-05 11:13:52] -rw-r--r-- 1 boincer umatlas     22882 Jun  5 11:13 stderr.txt
[2025-06-05 11:13:52] HITS file was successfully produced:
[2025-06-05 11:13:52] -rw------- 1 boincer umatlas 193909243 Jun  5 11:12 shared/HITS.pool.root.1
[2025-06-05 11:13:52]  *** Contents of shared directory: ***
[2025-06-05 11:13:52] total 412276
[2025-06-05 11:13:52] -rw-r--r-- 3 boincer umatlas 226471617 Jun  5 06:06 ATLAS.root_0
[2025-06-05 11:13:52] -rw-r--r-- 2 boincer umatlas     15093 Jun  5 06:06 start_atlas.sh
[2025-06-05 11:13:52] -rw-r--r-- 2 boincer umatlas    508879 Jun  5 06:06 input.tar.gz
[2025-06-05 11:13:52] -rw------- 1 boincer umatlas 193909243 Jun  5 11:12 HITS.pool.root.1
[2025-06-05 11:13:52] -rw------- 1 boincer umatlas   1249280 Jun  5 11:13 result.tar.gz
11:13:54 (7050): run_atlas exited; CPU time 74124.390223
11:13:54 (7050): called boinc_finish(0)

</stderr_txt>
]]>

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