Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:18:19 (27899): wrapper (7.7.26015): starting
05:18:19 (27899): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 05:18:19] Arguments: --nthreads 8
[2025-06-05 05:18:19] Threads: 8
[2025-06-05 05:18:19] Checking for CVMFS
[2025-06-05 05:18:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 05:18:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 05:18:19] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 05:18:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 05:18:19] 2.11.2.0 2932 15458 101620 146814 3 1 14357116 20275200 1 130560 0 6852398 99.955 3118175 7053 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-05 05:18:19] CVMFS is ok
[2025-06-05 05:18:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 05:18:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 05:18:19] Further information can be found at the LHC@home message board.
[2025-06-05 05:18:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 05:18:19] Checking for apptainer binary...
[2025-06-05 05:18:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 05:18:19] Running /usr/bin/apptainer --version
[2025-06-05 05:18:19] apptainer version 1.3.2-1.el7
[2025-06-05 05:18:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 05:18:21] c-204-17.aglt2.org
[2025-06-05 05:18:21] apptainer works
[2025-06-05 05:18:21] Set ATHENA_PROC_NUMBER=8
[2025-06-05 05:18:21] Set ATHENA_CORE_NUMBER=8
[2025-06-05 05:18:21] Starting ATLAS job with PandaID=6667923373
[2025-06-05 05:18:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 08:01:18]  *** The last 200 lines of the pilot log: ***
[2025-06-05 08:01:18] 2025-06-05 12:00:50,363 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 08:01:18] 2025-06-05 12:00:50,939 | INFO     | PID=31923 has CPU usage=7.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-05 08:01:18] 2025-06-05 12:00:52,866 | INFO     | monitor loop #715: job 0:6667923373 is in state 'finished'
[2025-06-05 08:01:18] 2025-06-05 12:00:52,867 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 08:01:18] 2025-06-05 12:00:55,370 | INFO     | monitor loop #716: job 0:6667923373 is in state 'finished'
[2025-06-05 08:01:18] 2025-06-05 12:00:55,370 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 08:01:18] 2025-06-05 12:00:56,997 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-05 08:01:18] 2025-06-05 12:00:56,998 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6667923373/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 08:01:18] 2025-06-05 12:00:56,999 | INFO     | extracted standard info from prmon json
[2025-06-05 08:01:18] 2025-06-05 12:00:56,999 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 08:01:18] 2025-06-05 12:00:56,999 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 08:01:18] 2025-06-05 12:00:57,000 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 08:01:18] 2025-06-05 12:00:57,000 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 08:01:18] 2025-06-05 12:00:57,004 | INFO     | fitting pss+swap vs Time
[2025-06-05 08:01:18] 2025-06-05 12:00:57,005 | INFO     | sum of square deviations: 1246386160.0
[2025-06-05 08:01:18] 2025-06-05 12:00:57,006 | INFO     | sum of deviations: -12870903314.999996
[2025-06-05 08:01:18] 2025-06-05 12:00:57,006 | INFO     | mean x: 1749119973.0
[2025-06-05 08:01:18] 2025-06-05 12:00:57,007 | INFO     | mean y: 2556024.6226415094
[2025-06-05 08:01:18] 2025-06-05 12:00:57,007 | INFO     | -- intersect: 18064979037.1009
[2025-06-05 08:01:18] 2025-06-05 12:00:57,007 | INFO     | intersect: 18064979037.1009
[2025-06-05 08:01:18] 2025-06-05 12:00:57,007 | INFO     | chi2: 1.7263846986994786
[2025-06-05 08:01:18] 2025-06-05 12:00:57,008 | INFO     | sum of square deviations: 1132458442.5
[2025-06-05 08:01:18] 2025-06-05 12:00:57,008 | INFO     | sum of deviations: -11807187023.000004
[2025-06-05 08:01:18] 2025-06-05 12:00:57,009 | INFO     | mean x: 1749119820.5
[2025-06-05 08:01:18] 2025-06-05 12:00:57,009 | INFO     | mean y: 2557448.948051948
[2025-06-05 08:01:18] 2025-06-05 12:00:57,009 | INFO     | -- intersect: 18239151456.48462
[2025-06-05 08:01:18] 2025-06-05 12:00:57,009 | INFO     | intersect: 18239151456.48462
[2025-06-05 08:01:18] 2025-06-05 12:00:57,009 | INFO     | chi2: 1.7259871528121113
[2025-06-05 08:01:18] 2025-06-05 12:00:57,009 | INFO     | current chi2=1.7259871528121113 (change=0.023027653550611833 %)
[2025-06-05 08:01:18] 2025-06-05 12:00:57,010 | INFO     | right removable region: 153
[2025-06-05 08:01:18] 2025-06-05 12:00:57,010 | INFO     | sum of square deviations: 1132458442.5
[2025-06-05 08:01:18] 2025-06-05 12:00:57,011 | INFO     | sum of deviations: -38170452441.99999
[2025-06-05 08:01:18] 2025-06-05 12:00:57,011 | INFO     | mean x: 1749120125.5
[2025-06-05 08:01:18] 2025-06-05 12:00:57,011 | INFO     | mean y: 2589415.7532467535
[2025-06-05 08:01:18] 2025-06-05 12:00:57,011 | INFO     | -- intersect: 58958136092.021515
[2025-06-05 08:01:18] 2025-06-05 12:00:57,011 | INFO     | intersect: 58958136092.021515
[2025-06-05 08:01:18] 2025-06-05 12:00:57,011 | INFO     | chi2: 0.16112144309372417
[2025-06-05 08:01:18] 2025-06-05 12:00:57,012 | INFO     | current chi2=0.16112144309372417 (change=90.66711821443387 %)
[2025-06-05 08:01:18] 2025-06-05 12:00:57,012 | INFO     | sum of square deviations: 1025693650.0
[2025-06-05 08:01:18] 2025-06-05 12:00:57,013 | INFO     | sum of deviations: -37167089855.0
[2025-06-05 08:01:18] 2025-06-05 12:00:57,013 | INFO     | mean x: 1749120278.0
[2025-06-05 08:01:18] 2025-06-05 12:00:57,013 | INFO     | mean y: 2587914.187919463
[2025-06-05 08:01:18] 2025-06-05 12:00:57,013 | INFO     | -- intersect: 63383803679.37139
[2025-06-05 08:01:18] 2025-06-05 12:00:57,013 | INFO     | intersect: 63383803679.37139
[2025-06-05 08:01:18] 2025-06-05 12:00:57,013 | INFO     | chi2: 0.1424431919090801
[2025-06-05 08:01:18] 2025-06-05 12:00:57,013 | INFO     | current chi2=0.1424431919090801 (change=11.592653855377238 %)
[2025-06-05 08:01:18] 2025-06-05 12:00:57,014 | INFO     | left removable region: 20
[2025-06-05 08:01:18] 2025-06-05 12:00:57,014 | INFO     | sum of square deviations: 729472282.0
[2025-06-05 08:01:18] 2025-06-05 12:00:57,014 | INFO     | sum of deviations: -27434619521.000008
[2025-06-05 08:01:18] 2025-06-05 12:00:57,015 | INFO     | mean x: 1749120400.0
[2025-06-05 08:01:18] 2025-06-05 12:00:57,015 | INFO     | mean y: 2577854.7293233084
[2025-06-05 08:01:18] 2025-06-05 12:00:57,015 | INFO     | -- intersect: 65784998728.69934
[2025-06-05 08:01:18] 2025-06-05 12:00:57,015 | INFO     | intersect: 65784998728.69934
[2025-06-05 08:01:18] 2025-06-05 12:00:57,015 | INFO     | chi2: 0.13440312186445724
[2025-06-05 08:01:18] 2025-06-05 12:00:57,015 | INFO     | -- intersect: 65784998728.69934
[2025-06-05 08:01:18] 2025-06-05 12:00:57,016 | INFO     | current memory leak: -37.61 B/s (using 133 data points, chi2=0.13)
[2025-06-05 08:01:18] 2025-06-05 12:00:57,016 | INFO     | ..............................
[2025-06-05 08:01:18] 2025-06-05 12:00:57,016 | INFO     | . Timing measurements:
[2025-06-05 08:01:18] 2025-06-05 12:00:57,016 | INFO     | . get job = 0 s
[2025-06-05 08:01:18] 2025-06-05 12:00:57,016 | INFO     | . initial setup = 2 s
[2025-06-05 08:01:18] 2025-06-05 12:00:57,016 | INFO     | . payload setup = 12 s
[2025-06-05 08:01:18] 2025-06-05 12:00:57,017 | INFO     | . stage-in = 0 s
[2025-06-05 08:01:18] 2025-06-05 12:00:57,017 | INFO     | . payload execution = 9693 s
[2025-06-05 08:01:18] 2025-06-05 12:00:57,017 | INFO     | . stage-out = 0 s
[2025-06-05 08:01:18] 2025-06-05 12:00:57,017 | INFO     | . log creation = 0 s
[2025-06-05 08:01:18] 2025-06-05 12:00:57,017 | INFO     | ..............................
[2025-06-05 08:01:18] 2025-06-05 12:00:57,477 | INFO     | 
[2025-06-05 08:01:18] 2025-06-05 12:00:57,478 | INFO     | job summary report
[2025-06-05 08:01:18] 2025-06-05 12:00:57,478 | INFO     | --------------------------------------------------
[2025-06-05 08:01:18] 2025-06-05 12:00:57,478 | INFO     | PanDA job id: 6667923373
[2025-06-05 08:01:18] 2025-06-05 12:00:57,478 | INFO     | task id: 44871837
[2025-06-05 08:01:18] 2025-06-05 12:00:57,478 | INFO     | errors: (none)
[2025-06-05 08:01:18] 2025-06-05 12:00:57,479 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 08:01:18] 2025-06-05 12:00:57,479 | INFO     | pilot state: finished 
[2025-06-05 08:01:18] 2025-06-05 12:00:57,479 | INFO     | transexitcode: 0
[2025-06-05 08:01:18] 2025-06-05 12:00:57,479 | INFO     | exeerrorcode: 0
[2025-06-05 08:01:18] 2025-06-05 12:00:57,479 | INFO     | exeerrordiag: 
[2025-06-05 08:01:18] 2025-06-05 12:00:57,479 | INFO     | exitcode: 0
[2025-06-05 08:01:18] 2025-06-05 12:00:57,480 | INFO     | exitmsg: OK
[2025-06-05 08:01:18] 2025-06-05 12:00:57,480 | INFO     | cpuconsumptiontime: 72873 s
[2025-06-05 08:01:18] 2025-06-05 12:00:57,480 | INFO     | nevents: 400
[2025-06-05 08:01:18] 2025-06-05 12:00:57,480 | INFO     | neventsw: 0
[2025-06-05 08:01:18] 2025-06-05 12:00:57,480 | INFO     | pid: 6902
[2025-06-05 08:01:18] 2025-06-05 12:00:57,480 | INFO     | pgrp: 6902
[2025-06-05 08:01:18] 2025-06-05 12:00:57,481 | INFO     | corecount: 8
[2025-06-05 08:01:18] 2025-06-05 12:00:57,481 | INFO     | event service: False
[2025-06-05 08:01:18] 2025-06-05 12:00:57,481 | INFO     | sizes: {0: 2397392, 6: 2397598, 11: 2397626, 9709: 2425914, 9710: 2434911, 9720: 2435025}
[2025-06-05 08:01:18] 2025-06-05 12:00:57,481 | INFO     | --------------------------------------------------
[2025-06-05 08:01:18] 2025-06-05 12:00:57,481 | INFO     | 
[2025-06-05 08:01:18] 2025-06-05 12:00:57,482 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 08:01:18] 2025-06-05 12:00:57,510 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 08:01:18] 2025-06-05 12:00:57,511 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 08:01:18] 2025-06-05 12:00:57,511 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 08:01:18] 2025-06-05 12:00:57,511 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 08:01:18] 2025-06-05 12:00:57,511 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 08:01:18] 2025-06-05 12:00:57,511 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 08:01:18] 2025-06-05 12:00:57,512 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 08:01:18] 2025-06-05 12:00:57,512 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 08:01:18] 2025-06-05 12:00:57,512 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 08:01:18] 2025-06-05 12:00:57,512 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 08:01:18] 2025-06-05 12:00:57,512 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 08:01:18] 2025-06-05 12:00:57,513 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 08:01:18] 2025-06-05 12:00:57,513 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 08:01:18] 2025-06-05 12:00:57,513 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 08:01:18] 2025-06-05 12:00:57,513 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 08:01:18] 2025-06-05 12:00:57,513 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 08:01:18] 2025-06-05 12:00:57,514 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 08:01:18] 2025-06-05 12:00:57,514 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 08:01:18] 2025-06-05 12:00:57,514 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 08:01:18] 2025-06-05 12:00:57,514 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 08:01:18] 2025-06-05 12:00:57,514 | INFO     | job 6667923373 has completed (purged errors)
[2025-06-05 08:01:18] 2025-06-05 12:00:57,515 | INFO     | overall cleanup function is called
[2025-06-05 08:01:18] 2025-06-05 12:00:58,523 | INFO     | --- collectZombieJob: --- 10, [6902]
[2025-06-05 08:01:18] 2025-06-05 12:00:58,523 | INFO     | zombie collector waiting for pid 6902
[2025-06-05 08:01:18] 2025-06-05 12:00:58,523 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 08:01:18] 2025-06-05 12:00:58,524 | INFO     | collected zombie processes
[2025-06-05 08:01:18] 2025-06-05 12:00:58,524 | INFO     | will attempt to kill all subprocesses of pid=6902
[2025-06-05 08:01:18] 2025-06-05 12:00:58,616 | INFO     | process IDs to be killed: [6902] (in reverse order)
[2025-06-05 08:01:18] 2025-06-05 12:00:58,674 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 08:01:18] 2025-06-05 12:00:58,674 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 08:01:18] 2025-06-05 12:00:58,678 | INFO     | did not find any defunct processes belonging to 6902
[2025-06-05 08:01:18] 2025-06-05 12:00:58,682 | INFO     | did not find any defunct processes belonging to 6902
[2025-06-05 08:01:18] 2025-06-05 12:00:58,682 | INFO     | ready for new job
[2025-06-05 08:01:18] 2025-06-05 12:00:58,682 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 08:01:18] 2025-06-05 12:00:58,684 | INFO     | **************************************
[2025-06-05 08:01:18] 2025-06-05 12:00:58,684 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 08:01:18] 2025-06-05 12:00:58,684 | INFO     | **************************************
[2025-06-05 08:01:18] 2025-06-05 12:00:58,685 | INFO     | 
[2025-06-05 08:01:18] 2025-06-05 12:00:58,685 | INFO     | architecture information:
[2025-06-05 08:01:18] 2025-06-05 12:00:58,686 | INFO     | executing command: cat /etc/os-release
[2025-06-05 08:01:18] 2025-06-05 12:00:58,703 | INFO     | cat /etc/os-release:
[2025-06-05 08:01:18] NAME="CentOS Linux"
[2025-06-05 08:01:18] VERSION="7 (Core)"
[2025-06-05 08:01:18] ID="centos"
[2025-06-05 08:01:18] ID_LIKE="rhel fedora"
[2025-06-05 08:01:18] VERSION_ID="7"
[2025-06-05 08:01:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 08:01:18] ANSI_COLOR="0;31"
[2025-06-05 08:01:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 08:01:18] HOME_URL="https://www.centos.org/"
[2025-06-05 08:01:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 08:01:18] 
[2025-06-05 08:01:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 08:01:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 08:01:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 08:01:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 08:01:18] 
[2025-06-05 08:01:18] 2025-06-05 12:00:58,703 | INFO     | **************************************
[2025-06-05 08:01:18] 2025-06-05 12:00:59,206 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 08:01:18] 2025-06-05 12:00:59,224 | INFO     | sufficient remaining disk space (18576572416 B)
[2025-06-05 08:01:18] 2025-06-05 12:00:59,224 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 08:01:18] 2025-06-05 12:00:59,225 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 08:01:18] 2025-06-05 12:00:59,225 | INFO     | update_server=False
[2025-06-05 08:01:18] 2025-06-05 12:00:59,225 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 08:01:18] 2025-06-05 12:00:59,226 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 08:01:18] 2025-06-05 12:00:59,226 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 08:01:18] 2025-06-05 12:00:59,226 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 08:01:18] 2025-06-05 12:00:59,227 | INFO     | aborting loop
[2025-06-05 08:01:18] 2025-06-05 12:00:59,227 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 08:01:18] 2025-06-05 12:00:59,227 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 08:01:18] 2025-06-05 12:00:59,627 | INFO     | all job control threads have been joined
[2025-06-05 08:01:18] 2025-06-05 12:00:59,989 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 08:01:18] 2025-06-05 12:01:00,109 | INFO     | all data control threads have been joined
[2025-06-05 08:01:18] 2025-06-05 12:01:00,231 | INFO     | [job] retrieve thread has finished
[2025-06-05 08:01:18] 2025-06-05 12:01:00,232 | INFO     | [job] job monitor thread has finished
[2025-06-05 08:01:18] 2025-06-05 12:01:00,303 | INFO     | [job] validate thread has finished
[2025-06-05 08:01:18] 2025-06-05 12:01:00,380 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 08:01:18] 2025-06-05 12:01:00,498 | INFO     | all payload control threads have been joined
[2025-06-05 08:01:18] 2025-06-05 12:01:00,633 | INFO     | [job] control thread has finished
[2025-06-05 08:01:18] 2025-06-05 12:01:00,724 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 08:01:18] 2025-06-05 12:01:00,725 | INFO     | [data] copytool_in thread has finished
[2025-06-05 08:01:18] 2025-06-05 12:01:00,747 | INFO     | [payload] failed_post thread has finished
[2025-06-05 08:01:18] 2025-06-05 12:01:01,088 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 08:01:18] 2025-06-05 12:01:01,115 | INFO     | [data] control thread has finished
[2025-06-05 08:01:18] 2025-06-05 12:01:01,393 | INFO     | [payload] validate_post thread has finished
[2025-06-05 08:01:18] 2025-06-05 12:01:01,504 | INFO     | [payload] control thread has finished
[2025-06-05 08:01:18] 2025-06-05 12:01:01,995 | INFO     | [data] copytool_out thread has finished
[2025-06-05 08:01:18] 2025-06-05 12:01:02,080 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 08:01:18] 2025-06-05 12:01:02,129 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 08:01:18] 2025-06-05 12:01:03,133 | INFO     | [job] queue monitor thread has finished
[2025-06-05 08:01:18] 2025-06-05 12:01:06,086 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 08:01:18] 2025-06-05 12:01:10,151 | INFO     | job.realtimelogging is not enabled
[2025-06-05 08:01:18] 2025-06-05 12:01:11,156 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 08:01:18] 2025-06-05 12:01:13,227 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140565398927168)>', '<ExcThread(monitor, started 140564724958976)>']
[2025-06-05 08:01:18] 2025-06-05 12:01:13,291 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 08:01:18] 2025-06-05 12:01:13,291 | INFO     | [monitor] control thread has ended
[2025-06-05 08:01:18] 2025-06-05 12:01:18,253 | INFO     | all workflow threads have been joined
[2025-06-05 08:01:18] 2025-06-05 12:01:18,253 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 08:01:18] 2025-06-05 12:01:18,254 | INFO     | traces error code: 0
[2025-06-05 08:01:18] 2025-06-05 12:01:18,254 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 08:01:18] 2025-06-05 12:01:18,364 [wrapper] ==== pilot stdout END ====
[2025-06-05 08:01:18] 2025-06-05 12:01:18,368 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 08:01:18] 2025-06-05 12:01:18,373 [wrapper] pilotpid: 31923
[2025-06-05 08:01:18] 2025-06-05 12:01:18,377 [wrapper] Pilot exit status: 0
[2025-06-05 08:01:18] 2025-06-05 12:01:18,398 [wrapper] pandaids: 6667923373
[2025-06-05 08:01:18] 2025-06-05 12:01:18,441 [wrapper] cleanup supervisor_pilot 28592 31924
[2025-06-05 08:01:18] 2025-06-05 12:01:18,446 [wrapper] Test setup, not cleaning
[2025-06-05 08:01:18] 2025-06-05 12:01:18,451 [wrapper] apfmon messages muted
[2025-06-05 08:01:18] 2025-06-05 12:01:18,456 [wrapper] ==== wrapper stdout END ====
[2025-06-05 08:01:18] 2025-06-05 12:01:18,460 [wrapper] ==== wrapper stderr END ====
[2025-06-05 08:01:18]  *** Error codes and diagnostics ***
[2025-06-05 08:01:18]     "exeErrorCode": 0,
[2025-06-05 08:01:18]     "exeErrorDiag": "",
[2025-06-05 08:01:18]     "pilotErrorCode": 0,
[2025-06-05 08:01:18]     "pilotErrorDiag": "",
[2025-06-05 08:01:18]  *** Listing of results directory ***
[2025-06-05 08:01:18] total 414880
[2025-06-05 08:01:18] -rw-r--r-- 1 boincer umatlas    495897 May 27 22:39 pilot3.tar.gz
[2025-06-05 08:01:18] -rwx------ 1 boincer umatlas     37140 May 27 23:05 runpilot2-wrapper.sh
[2025-06-05 08:01:18] -rw-r--r-- 1 boincer umatlas      5111 May 27 23:05 queuedata.json
[2025-06-05 08:01:18] -rw-r--r-- 1 boincer umatlas       100 Jun  5 05:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 08:01:18] -rwxr-xr-x 1 boincer umatlas      7986 Jun  5 05:18 run_atlas
[2025-06-05 08:01:18] -rw-r--r-- 1 boincer umatlas       105 Jun  5 05:18 job.xml
[2025-06-05 08:01:18] -rw-r--r-- 2 boincer umatlas 224668063 Jun  5 05:18 EVNT.44871834._003046.pool.root.1
[2025-06-05 08:01:18] -rw-r--r-- 2 boincer umatlas     15093 Jun  5 05:18 start_atlas.sh
[2025-06-05 08:01:18] drwxrwx--x 2 boincer umatlas      4096 Jun  5 05:18 shared
[2025-06-05 08:01:18] -rw-r--r-- 2 boincer umatlas    508880 Jun  5 05:18 input.tar.gz
[2025-06-05 08:01:18] -rw-r--r-- 1 boincer umatlas         0 Jun  5 05:18 boinc_lockfile
[2025-06-05 08:01:18] -rw-r--r-- 1 boincer umatlas      2559 Jun  5 05:18 pandaJob.out
[2025-06-05 08:01:18] -rw------- 1 boincer umatlas    983289 Jun  5 05:18 agis_schedconf.cvmfs.json
[2025-06-05 08:01:18] -rw------- 1 boincer umatlas   1598969 Jun  5 05:18 agis_ddmendpoints.agis.ALL.json
[2025-06-05 08:01:18] drwx------ 4 boincer umatlas      4096 Jun  5 05:18 pilot3
[2025-06-05 08:01:18] -rw-r--r-- 1 boincer umatlas      5904 Jun  5 07:56 init_data.xml
[2025-06-05 08:01:18] -rw------- 1 boincer umatlas 193895178 Jun  5 08:00 HITS.44871837._077925.pool.root.1
[2025-06-05 08:01:18] -rw-r--r-- 1 boincer umatlas       530 Jun  5 08:00 boinc_task_state.xml
[2025-06-05 08:01:18] -rw------- 1 boincer umatlas      1049 Jun  5 08:00 memory_monitor_summary.json
[2025-06-05 08:01:18] -rw------- 1 boincer umatlas    350399 Jun  5 08:00 log.44871837._077925.job.log.tgz.1
[2025-06-05 08:01:18] -rw------- 1 boincer umatlas        95 Jun  5 08:00 pilot_heartbeat.json
[2025-06-05 08:01:18] -rw------- 1 boincer umatlas      7749 Jun  5 08:00 heartbeat.json
[2025-06-05 08:01:18] -rw-r--r-- 1 boincer umatlas        27 Jun  5 08:01 wrapper_checkpoint.txt
[2025-06-05 08:01:18] -rw-r--r-- 1 boincer umatlas      8192 Jun  5 08:01 boinc_mmap_file
[2025-06-05 08:01:18] -rw------- 1 boincer umatlas      4548 Jun  5 08:01 pilotlog.txt
[2025-06-05 08:01:18] -rw------- 1 boincer umatlas    872427 Jun  5 08:01 log.44871837._077925.job.log.1
[2025-06-05 08:01:18] -rw------- 1 boincer umatlas       357 Jun  5 08:01 output.list
[2025-06-05 08:01:18] -rw-r--r-- 1 boincer umatlas       620 Jun  5 08:01 runtime_log
[2025-06-05 08:01:18] -rw------- 1 boincer umatlas   1239040 Jun  5 08:01 result.tar.gz
[2025-06-05 08:01:18] -rw------- 1 boincer umatlas       661 Jun  5 08:01 T42KDmeHMe7n9Rq4apOajLDm4fhM0noT9bVof3QYDmUqSKDmAZFuVm.diag
[2025-06-05 08:01:18] -rw-r--r-- 1 boincer umatlas      8659 Jun  5 08:01 runtime_log.err
[2025-06-05 08:01:18] -rw-r--r-- 1 boincer umatlas     21122 Jun  5 08:01 stderr.txt
[2025-06-05 08:01:18] HITS file was successfully produced:
[2025-06-05 08:01:18] -rw------- 1 boincer umatlas 193895178 Jun  5 08:00 shared/HITS.pool.root.1
[2025-06-05 08:01:18]  *** Contents of shared directory: ***
[2025-06-05 08:01:18] total 410492
[2025-06-05 08:01:18] -rw-r--r-- 2 boincer umatlas 224668063 Jun  5 05:18 ATLAS.root_0
[2025-06-05 08:01:18] -rw-r--r-- 2 boincer umatlas     15093 Jun  5 05:18 start_atlas.sh
[2025-06-05 08:01:18] -rw-r--r-- 2 boincer umatlas    508880 Jun  5 05:18 input.tar.gz
[2025-06-05 08:01:18] -rw------- 1 boincer umatlas 193895178 Jun  5 08:00 HITS.pool.root.1
[2025-06-05 08:01:18] -rw------- 1 boincer umatlas   1239040 Jun  5 08:01 result.tar.gz
08:01:20 (27899): run_atlas exited; CPU time 72810.189413
08:01:20 (27899): called boinc_finish(0)

</stderr_txt>
]]>

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