Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:38:57 (27668): wrapper (7.7.26015): starting
15:38:57 (27668): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 15:38:57] Arguments: --nthreads 8
[2025-06-05 15:38:57] Threads: 8
[2025-06-05 15:38:57] Checking for CVMFS
[2025-06-05 15:38:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 15:38:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 15:38:57] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 15:38:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 15:38:58] 2.11.2.0 3973 34860 94136 146820 0 59 16400066 25165824 3909 130560 0 19357112 99.762 22311828 2721 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 15:38:58] CVMFS is ok
[2025-06-05 15:38:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 15:38:58] Checking for apptainer binary...
[2025-06-05 15:38:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 15:38:58] Running /usr/bin/apptainer --version
[2025-06-05 15:38:59] apptainer version 1.3.2-1.el7
[2025-06-05 15:38:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 15:39:05] cg-vwn471.simple-grid.lan
[2025-06-05 15:39:05] apptainer works
[2025-06-05 15:39:05] Set ATHENA_PROC_NUMBER=8
[2025-06-05 15:39:05] Set ATHENA_CORE_NUMBER=8
[2025-06-05 15:39:05] Starting ATLAS job with PandaID=6668863663
[2025-06-05 15:39:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 20:46:32]  *** The last 200 lines of the pilot log: ***
[2025-06-05 20:46:32] 2025-06-05 18:45:12,582 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 20:46:32] 2025-06-05 18:45:12,582 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 20:46:32] 2025-06-05 18:45:12,582 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 20:46:32] 2025-06-05 18:45:12,583 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 20:46:32] 2025-06-05 18:45:12,588 | INFO     | fitting pss+swap vs Time
[2025-06-05 20:46:32] 2025-06-05 18:45:12,597 | INFO     | sum of square deviations: 7484568240.0
[2025-06-05 20:46:32] 2025-06-05 18:45:12,599 | INFO     | sum of deviations: 128043237548.0
[2025-06-05 20:46:32] 2025-06-05 18:45:12,600 | INFO     | mean x: 1749140207.0
[2025-06-05 20:46:32] 2025-06-05 18:45:12,600 | INFO     | mean y: 2433973.259515571
[2025-06-05 20:46:32] 2025-06-05 18:45:12,600 | INFO     | -- intersect: -29921212635.066273
[2025-06-05 20:46:32] 2025-06-05 18:45:12,600 | INFO     | intersect: -29921212635.066273
[2025-06-05 20:46:32] 2025-06-05 18:45:12,600 | INFO     | chi2: 6.484484721460433
[2025-06-05 20:46:32] 2025-06-05 18:45:12,601 | INFO     | sum of square deviations: 7102775035.0
[2025-06-05 20:46:32] 2025-06-05 18:45:12,603 | INFO     | sum of deviations: 144628803054.50003
[2025-06-05 20:46:32] 2025-06-05 18:45:12,603 | INFO     | mean x: 1749140054.5
[2025-06-05 20:46:32] 2025-06-05 18:45:12,604 | INFO     | mean y: 2440490.8767605633
[2025-06-05 20:46:32] 2025-06-05 18:45:12,604 | INFO     | -- intersect: -35614065904.220955
[2025-06-05 20:46:32] 2025-06-05 18:45:12,604 | INFO     | intersect: -35614065904.220955
[2025-06-05 20:46:32] 2025-06-05 18:45:12,604 | INFO     | chi2: 5.753509082746361
[2025-06-05 20:46:32] 2025-06-05 18:45:12,604 | INFO     | current chi2=5.753509082746361 (change=11.27268657592645 %)
[2025-06-05 20:46:32] 2025-06-05 18:45:12,604 | INFO     | right removable region: 283
[2025-06-05 20:46:32] 2025-06-05 18:45:12,605 | INFO     | sum of square deviations: 7102775035.0
[2025-06-05 20:46:32] 2025-06-05 18:45:12,607 | INFO     | sum of deviations: 28568394038.500004
[2025-06-05 20:46:32] 2025-06-05 18:45:12,608 | INFO     | mean x: 1749140359.5
[2025-06-05 20:46:32] 2025-06-05 18:45:12,608 | INFO     | mean y: 2473678.0950704226
[2025-06-05 20:46:32] 2025-06-05 18:45:12,608 | INFO     | -- intersect: -7032823198.492482
[2025-06-05 20:46:32] 2025-06-05 18:45:12,608 | INFO     | intersect: -7032823198.492482
[2025-06-05 20:46:32] 2025-06-05 18:45:12,609 | INFO     | chi2: 1.8330531701549937
[2025-06-05 20:46:32] 2025-06-05 18:45:12,609 | INFO     | current chi2=1.8330531701549937 (change=71.73170654426102 %)
[2025-06-05 20:46:32] 2025-06-05 18:45:12,609 | INFO     | sum of square deviations: 6734191380.0
[2025-06-05 20:46:32] 2025-06-05 18:45:12,611 | INFO     | sum of deviations: -12159176604.000002
[2025-06-05 20:46:32] 2025-06-05 18:45:12,612 | INFO     | mean x: 1749140512.0
[2025-06-05 20:46:32] 2025-06-05 18:45:12,612 | INFO     | mean y: 2490428.440860215
[2025-06-05 20:46:32] 2025-06-05 18:45:12,612 | INFO     | -- intersect: 3160717926.0708704
[2025-06-05 20:46:32] 2025-06-05 18:45:12,612 | INFO     | intersect: 3160717926.0708704
[2025-06-05 20:46:32] 2025-06-05 18:45:12,612 | INFO     | chi2: 0.8329167525764102
[2025-06-05 20:46:32] 2025-06-05 18:45:12,616 | INFO     | current chi2=0.8329167525764102 (change=54.561233348949564 %)
[2025-06-05 20:46:32] 2025-06-05 18:45:12,617 | INFO     | sum of square deviations: 6378584712.5
[2025-06-05 20:46:32] 2025-06-05 18:45:12,619 | INFO     | sum of deviations: -8206456270.000002
[2025-06-05 20:46:32] 2025-06-05 18:45:12,619 | INFO     | mean x: 1749140664.5
[2025-06-05 20:46:32] 2025-06-05 18:45:12,619 | INFO     | mean y: 2488710.182481752
[2025-06-05 20:46:32] 2025-06-05 18:45:12,619 | INFO     | -- intersect: 2252869793.1785626
[2025-06-05 20:46:32] 2025-06-05 18:45:12,620 | INFO     | intersect: 2252869793.1785626
[2025-06-05 20:46:32] 2025-06-05 18:45:12,620 | INFO     | chi2: 0.8104770825263811
[2025-06-05 20:46:32] 2025-06-05 18:45:12,620 | INFO     | current chi2=0.8104770825263811 (change=2.6941071818543527 %)
[2025-06-05 20:46:32] 2025-06-05 18:45:12,620 | INFO     | left removable region: 30
[2025-06-05 20:46:32] 2025-06-05 18:45:12,621 | INFO     | sum of square deviations: 5021496942.0
[2025-06-05 20:46:32] 2025-06-05 18:45:12,623 | INFO     | sum of deviations: 9109580302.000006
[2025-06-05 20:46:32] 2025-06-05 18:45:12,623 | INFO     | mean x: 1749140939.0
[2025-06-05 20:46:32] 2025-06-05 18:45:12,623 | INFO     | mean y: 2496963.8735177866
[2025-06-05 20:46:32] 2025-06-05 18:45:12,623 | INFO     | -- intersect: -3170648420.337331
[2025-06-05 20:46:32] 2025-06-05 18:45:12,623 | INFO     | intersect: -3170648420.337331
[2025-06-05 20:46:32] 2025-06-05 18:45:12,624 | INFO     | chi2: 0.0008961891742093319
[2025-06-05 20:46:32] 2025-06-05 18:45:12,624 | INFO     | -- intersect: -3170648420.337331
[2025-06-05 20:46:32] 2025-06-05 18:45:12,624 | INFO     | current memory leak: 1.81 B/s (using 253 data points, chi2=0.00)
[2025-06-05 20:46:32] 2025-06-05 18:45:12,625 | INFO     | ..............................
[2025-06-05 20:46:32] 2025-06-05 18:45:12,625 | INFO     | . Timing measurements:
[2025-06-05 20:46:32] 2025-06-05 18:45:12,625 | INFO     | . get job = 0 s
[2025-06-05 20:46:32] 2025-06-05 18:45:12,625 | INFO     | . initial setup = 11 s
[2025-06-05 20:46:32] 2025-06-05 18:45:12,625 | INFO     | . payload setup = 155 s
[2025-06-05 20:46:32] 2025-06-05 18:45:12,625 | INFO     | . stage-in = 0 s
[2025-06-05 20:46:32] 2025-06-05 18:45:12,626 | INFO     | . payload execution = 17741 s
[2025-06-05 20:46:32] 2025-06-05 18:45:12,626 | INFO     | . stage-out = 4 s
[2025-06-05 20:46:32] 2025-06-05 18:45:12,626 | INFO     | . log creation = 1 s
[2025-06-05 20:46:32] 2025-06-05 18:45:12,626 | INFO     | ..............................
[2025-06-05 20:46:32] 2025-06-05 18:45:13,082 | INFO     | 
[2025-06-05 20:46:32] 2025-06-05 18:45:13,082 | INFO     | job summary report
[2025-06-05 20:46:32] 2025-06-05 18:45:13,082 | INFO     | --------------------------------------------------
[2025-06-05 20:46:32] 2025-06-05 18:45:13,082 | INFO     | PanDA job id: 6668863663
[2025-06-05 20:46:32] 2025-06-05 18:45:13,082 | INFO     | task id: 44871837
[2025-06-05 20:46:32] 2025-06-05 18:45:13,082 | INFO     | errors: (none)
[2025-06-05 20:46:32] 2025-06-05 18:45:13,083 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 20:46:32] 2025-06-05 18:45:13,083 | INFO     | pilot state: finished 
[2025-06-05 20:46:32] 2025-06-05 18:45:13,083 | INFO     | transexitcode: 0
[2025-06-05 20:46:32] 2025-06-05 18:45:13,083 | INFO     | exeerrorcode: 0
[2025-06-05 20:46:32] 2025-06-05 18:45:13,083 | INFO     | exeerrordiag: 
[2025-06-05 20:46:32] 2025-06-05 18:45:13,083 | INFO     | exitcode: 0
[2025-06-05 20:46:32] 2025-06-05 18:45:13,083 | INFO     | exitmsg: OK
[2025-06-05 20:46:32] 2025-06-05 18:45:13,083 | INFO     | cpuconsumptiontime: 65280 s
[2025-06-05 20:46:32] 2025-06-05 18:45:13,083 | INFO     | nevents: 400
[2025-06-05 20:46:32] 2025-06-05 18:45:13,083 | INFO     | neventsw: 0
[2025-06-05 20:46:32] 2025-06-05 18:45:13,083 | INFO     | pid: 7954
[2025-06-05 20:46:32] 2025-06-05 18:45:13,083 | INFO     | pgrp: 7954
[2025-06-05 20:46:32] 2025-06-05 18:45:13,084 | INFO     | corecount: 8
[2025-06-05 20:46:32] 2025-06-05 18:45:13,084 | INFO     | event service: False
[2025-06-05 20:46:32] 2025-06-05 18:45:13,084 | INFO     | sizes: {0: 2396558, 1: 2397160, 2: 2397443, 3: 2397443, 13: 2397471, 24: 2397527, 35: 2397683, 46: 2397711, 56: 2397739, 67: 2397767, 78: 2397795, 83: 2398337, 88:
[2025-06-05 20:46:32] 2025-06-05 18:45:13,084 | INFO     | --------------------------------------------------
[2025-06-05 20:46:32] 2025-06-05 18:45:13,084 | INFO     | 
[2025-06-05 20:46:32] 2025-06-05 18:45:13,084 | INFO     | executing command: ls -lF /var/lib/boinc/slots/14
[2025-06-05 20:46:32] 2025-06-05 18:45:13,578 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 20:46:32] 2025-06-05 18:45:13,579 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 20:46:32] 2025-06-05 18:45:13,579 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 20:46:32] 2025-06-05 18:45:13,579 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 20:46:32] 2025-06-05 18:45:13,579 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 20:46:32] 2025-06-05 18:45:13,579 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 20:46:32] 2025-06-05 18:45:13,579 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 20:46:32] 2025-06-05 18:45:13,579 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 20:46:32] 2025-06-05 18:45:13,579 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 20:46:32] 2025-06-05 18:45:13,579 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 20:46:32] 2025-06-05 18:45:13,579 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 20:46:32] 2025-06-05 18:45:13,580 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 20:46:32] 2025-06-05 18:45:13,580 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 20:46:32] 2025-06-05 18:45:13,580 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 20:46:32] 2025-06-05 18:45:13,580 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 20:46:32] 2025-06-05 18:45:13,580 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 20:46:32] 2025-06-05 18:45:13,580 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 20:46:32] 2025-06-05 18:45:13,580 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 20:46:32] 2025-06-05 18:45:13,580 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 20:46:32] 2025-06-05 18:45:13,580 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 20:46:32] 2025-06-05 18:45:13,580 | INFO     | job 6668863663 has completed (purged errors)
[2025-06-05 20:46:32] 2025-06-05 18:45:13,581 | INFO     | overall cleanup function is called
[2025-06-05 20:46:32] 2025-06-05 18:45:14,590 | INFO     | --- collectZombieJob: --- 10, [7954]
[2025-06-05 20:46:32] 2025-06-05 18:45:14,590 | INFO     | zombie collector waiting for pid 7954
[2025-06-05 20:46:32] 2025-06-05 18:45:14,590 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 20:46:32] 2025-06-05 18:45:14,590 | INFO     | collected zombie processes
[2025-06-05 20:46:32] 2025-06-05 18:45:14,590 | INFO     | will attempt to kill all subprocesses of pid=7954
[2025-06-05 20:46:32] 2025-06-05 18:45:14,689 | INFO     | process IDs to be killed: [7954] (in reverse order)
[2025-06-05 20:46:32] 2025-06-05 18:45:14,755 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 20:46:32] 2025-06-05 18:45:14,755 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 20:46:32] 2025-06-05 18:45:14,758 | INFO     | did not find any defunct processes belonging to 7954
[2025-06-05 20:46:32] 2025-06-05 18:45:14,762 | INFO     | did not find any defunct processes belonging to 7954
[2025-06-05 20:46:32] 2025-06-05 18:45:14,762 | INFO     | ready for new job
[2025-06-05 20:46:32] 2025-06-05 18:45:14,762 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 20:46:32] 2025-06-05 18:45:14,765 | INFO     | **************************************
[2025-06-05 20:46:32] 2025-06-05 18:45:14,765 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 20:46:32] 2025-06-05 18:45:14,765 | INFO     | **************************************
[2025-06-05 20:46:32] 2025-06-05 18:45:14,765 | INFO     | 
[2025-06-05 20:46:32] 2025-06-05 18:45:14,766 | INFO     | pilot is running in a VM
[2025-06-05 20:46:32] 2025-06-05 18:45:14,766 | INFO     | architecture information:
[2025-06-05 20:46:32] 2025-06-05 18:45:14,769 | INFO     | executing command: cat /etc/os-release
[2025-06-05 20:46:32] 2025-06-05 18:45:14,976 | INFO     | cat /etc/os-release:
[2025-06-05 20:46:32] NAME="CentOS Linux"
[2025-06-05 20:46:32] VERSION="7 (Core)"
[2025-06-05 20:46:32] ID="centos"
[2025-06-05 20:46:32] ID_LIKE="rhel fedora"
[2025-06-05 20:46:32] VERSION_ID="7"
[2025-06-05 20:46:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 20:46:32] ANSI_COLOR="0;31"
[2025-06-05 20:46:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 20:46:32] HOME_URL="https://www.centos.org/"
[2025-06-05 20:46:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 20:46:32] 
[2025-06-05 20:46:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 20:46:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 20:46:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 20:46:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 20:46:32] 
[2025-06-05 20:46:32] 2025-06-05 18:45:14,976 | INFO     | **************************************
[2025-06-05 20:46:32] 2025-06-05 18:45:15,480 | INFO     | executing command: df -mP /var/lib/boinc/slots/14
[2025-06-05 20:46:32] 2025-06-05 18:45:15,549 | INFO     | sufficient remaining disk space (496975740928 B)
[2025-06-05 20:46:32] 2025-06-05 18:45:15,549 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 20:46:32] 2025-06-05 18:45:15,549 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 20:46:32] 2025-06-05 18:45:15,549 | INFO     | update_server=False
[2025-06-05 20:46:32] 2025-06-05 18:45:15,549 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 20:46:32] 2025-06-05 18:45:15,551 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 20:46:32] 2025-06-05 18:45:15,583 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 20:46:32] 2025-06-05 18:45:16,014 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-05 20:46:32] 2025-06-05 18:45:16,014 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-05 20:46:32] 2025-06-05 18:45:16,014 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 20:46:32] 2025-06-05 18:45:16,014 | INFO     | will abort loop
[2025-06-05 20:46:32] 2025-06-05 18:45:16,043 | INFO     | all payload control threads have been joined
[2025-06-05 20:46:32] 2025-06-05 18:45:16,102 | INFO     | all data control threads have been joined
[2025-06-05 20:46:32] 2025-06-05 18:45:16,179 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 20:46:32] 2025-06-05 18:45:16,179 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 20:46:32] 2025-06-05 18:45:16,179 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 20:46:32] 2025-06-05 18:45:16,556 | INFO     | [job] retrieve thread has finished
[2025-06-05 20:46:32] 2025-06-05 18:45:16,607 | INFO     | all job control threads have been joined
[2025-06-05 20:46:32] 2025-06-05 18:45:16,733 | INFO     | [job] validate thread has finished
[2025-06-05 20:46:32] 2025-06-05 18:45:16,902 | INFO     | [payload] failed_post thread has finished
[2025-06-05 20:46:32] 2025-06-05 18:45:16,925 | INFO     | [data] copytool_in thread has finished
[2025-06-05 20:46:32] 2025-06-05 18:45:16,926 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 20:46:32] 2025-06-05 18:45:17,020 | INFO     | [job] job monitor thread has finished
[2025-06-05 20:46:32] 2025-06-05 18:45:17,049 | INFO     | [payload] control thread has finished
[2025-06-05 20:46:32] 2025-06-05 18:45:17,108 | INFO     | [data] control thread has finished
[2025-06-05 20:46:32] 2025-06-05 18:45:17,277 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 20:46:32] 2025-06-05 18:45:17,448 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 20:46:32] 2025-06-05 18:45:17,558 | INFO     | [data] copytool_out thread has finished
[2025-06-05 20:46:32] 2025-06-05 18:45:17,613 | INFO     | [job] control thread has finished
[2025-06-05 20:46:32] 2025-06-05 18:45:17,668 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 20:46:32] 2025-06-05 18:45:17,791 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 20:46:32] 2025-06-05 18:45:17,845 | INFO     | [payload] validate_post thread has finished
[2025-06-05 20:46:32] 2025-06-05 18:45:18,797 | INFO     | [job] queue monitor thread has finished
[2025-06-05 20:46:32] 2025-06-05 18:45:19,592 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 20:46:32] 2025-06-05 18:45:20,717 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140184690874176)>', '<ExcThread(monitor, started 140184033158912)>']
[2025-06-05 20:46:32] 2025-06-05 18:45:21,210 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 20:46:32] 2025-06-05 18:45:21,210 | INFO     | [monitor] control thread has ended
[2025-06-05 20:46:32] 2025-06-05 18:45:25,743 | INFO     | all workflow threads have been joined
[2025-06-05 20:46:32] 2025-06-05 18:45:25,743 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 20:46:32] 2025-06-05 18:45:25,743 | INFO     | traces error code: 0
[2025-06-05 20:46:32] 2025-06-05 18:45:25,744 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 20:46:32] 2025-06-05 18:45:26,132 [wrapper] ==== pilot stdout END ====
[2025-06-05 20:46:32] 2025-06-05 18:45:26,218 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 20:46:32] 2025-06-05 18:45:26,316 [wrapper] pilotpid: 1305
[2025-06-05 20:46:32] 2025-06-05 18:45:26,384 [wrapper] Pilot exit status: 0
[2025-06-05 20:46:32] 2025-06-05 18:45:26,823 [wrapper] pandaids: 6668863663
[2025-06-05 20:46:32] 2025-06-05 18:45:27,841 [wrapper] cleanup supervisor_pilot  3111 1306
[2025-06-05 20:46:32] 2025-06-05 18:45:27,951 [wrapper] Test setup, not cleaning
[2025-06-05 20:46:32] 2025-06-05 18:45:28,043 [wrapper] apfmon messages muted
[2025-06-05 20:46:32] 2025-06-05 18:45:28,150 [wrapper] ==== wrapper stdout END ====
[2025-06-05 20:46:32] 2025-06-05 18:45:28,259 [wrapper] ==== wrapper stderr END ====
[2025-06-05 20:46:32]  *** Error codes and diagnostics ***
[2025-06-05 20:46:32]     "exeErrorCode": 0,
[2025-06-05 20:46:32]     "exeErrorDiag": "",
[2025-06-05 20:46:32]     "pilotErrorCode": 0,
[2025-06-05 20:46:32]     "pilotErrorDiag": "",
[2025-06-05 20:46:32]  *** Listing of results directory ***
[2025-06-05 20:46:32] total 418240
[2025-06-05 20:46:32] -rw-r--r--. 1 boinc boinc    495897 May 28 22:14 pilot3.tar.gz
[2025-06-05 20:46:32] -rwx------. 1 boinc boinc     37140 May 28 22:37 runpilot2-wrapper.sh
[2025-06-05 20:46:32] -rw-r--r--. 1 boinc boinc      5111 May 28 22:37 queuedata.json
[2025-06-05 20:46:32] -rw-r--r--. 1 boinc boinc       100 Jun  5 15:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 20:46:32] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 15:38 run_atlas
[2025-06-05 20:46:32] -rw-r--r--. 1 boinc boinc       105 Jun  5 15:38 job.xml
[2025-06-05 20:46:32] -rw-r--r--. 1 boinc boinc      6393 Jun  5 15:38 init_data.xml
[2025-06-05 20:46:32] -rw-r--r--. 2 boinc boinc 225736704 Jun  5 15:38 EVNT.44871834._003505.pool.root.1
[2025-06-05 20:46:32] -rw-r--r--. 2 boinc boinc     15093 Jun  5 15:38 start_atlas.sh
[2025-06-05 20:46:32] drwxrwx--x. 2 boinc boinc        68 Jun  5 15:38 shared
[2025-06-05 20:46:32] -rw-r--r--. 2 boinc boinc    508877 Jun  5 15:38 input.tar.gz
[2025-06-05 20:46:32] -rw-r--r--. 1 boinc boinc         0 Jun  5 15:38 boinc_lockfile
[2025-06-05 20:46:32] -rw-r--r--. 1 boinc boinc      2556 Jun  5 15:39 pandaJob.out
[2025-06-05 20:46:32] -rw-------. 1 boinc boinc    983210 Jun  5 15:42 agis_schedconf.cvmfs.json
[2025-06-05 20:46:32] drwx------. 4 boinc boinc      4096 Jun  5 15:42 pilot3
[2025-06-05 20:46:32] -rw-------. 1 boinc boinc 194801672 Jun  5 20:42 HITS.44871837._090066.pool.root.1
[2025-06-05 20:46:32] -rw-r--r--. 1 boinc boinc       531 Jun  5 20:42 boinc_task_state.xml
[2025-06-05 20:46:32] -rw-------. 1 boinc boinc      1031 Jun  5 20:43 memory_monitor_summary.json
[2025-06-05 20:46:32] -rw-------. 1 boinc boinc   1598969 Jun  5 20:43 agis_ddmendpoints.agis.ALL.json
[2025-06-05 20:46:32] -rw-------. 1 boinc boinc    406114 Jun  5 20:43 log.44871837._090066.job.log.tgz.1
[2025-06-05 20:46:32] -rw-------. 1 boinc boinc        95 Jun  5 20:44 pilot_heartbeat.json
[2025-06-05 20:46:32] -rw-------. 1 boinc boinc      7691 Jun  5 20:45 heartbeat.json
[2025-06-05 20:46:32] -rw-------. 1 boinc boinc      4603 Jun  5 20:45 pilotlog.txt
[2025-06-05 20:46:32] -rw-------. 1 boinc boinc   1554944 Jun  5 20:45 log.44871837._090066.job.log.1
[2025-06-05 20:46:32] -rw-------. 1 boinc boinc       357 Jun  5 20:45 output.list
[2025-06-05 20:46:32] -rw-r--r--. 1 boinc boinc       620 Jun  5 20:45 runtime_log
[2025-06-05 20:46:32] -rw-------. 1 boinc boinc   1976320 Jun  5 20:45 result.tar.gz
[2025-06-05 20:46:32] -rw-r--r--. 1 boinc boinc      8673 Jun  5 20:45 runtime_log.err
[2025-06-05 20:46:32] -rw-------. 1 boinc boinc       657 Jun  5 20:45 5wXKDm7hce7n9Rq4apOajLDm4fhM0noT9bVof3QYDmJ5TKDmUkK5nm.diag
[2025-06-05 20:46:32] -rw-r--r--. 1 boinc boinc      8192 Jun  5 20:46 boinc_mmap_file
[2025-06-05 20:46:32] -rw-r--r--. 1 boinc boinc        28 Jun  5 20:46 wrapper_checkpoint.txt
[2025-06-05 20:46:32] -rw-r--r--. 1 boinc boinc     20505 Jun  5 20:46 stderr.txt
[2025-06-05 20:46:32] HITS file was successfully produced:
[2025-06-05 20:46:32] -rw-------. 1 boinc boinc 194801672 Jun  5 20:42 shared/HITS.pool.root.1
[2025-06-05 20:46:32]  *** Contents of shared directory: ***
[2025-06-05 20:46:32] total 413136
[2025-06-05 20:46:32] -rw-r--r--. 2 boinc boinc 225736704 Jun  5 15:38 ATLAS.root_0
[2025-06-05 20:46:32] -rw-r--r--. 2 boinc boinc     15093 Jun  5 15:38 start_atlas.sh
[2025-06-05 20:46:32] -rw-r--r--. 2 boinc boinc    508877 Jun  5 15:38 input.tar.gz
[2025-06-05 20:46:32] -rw-------. 1 boinc boinc 194801672 Jun  5 20:42 HITS.pool.root.1
[2025-06-05 20:46:32] -rw-------. 1 boinc boinc   1976320 Jun  5 20:45 result.tar.gz
20:46:34 (27668): run_atlas exited; CPU time 65505.677908
20:46:34 (27668): called boinc_finish(0)

</stderr_txt>
]]>

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