Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:01:21 (1743751): wrapper (7.7.26015): starting
05:01:21 (1743751): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 05:01:21] Arguments: --nthreads 8
[2025-06-05 05:01:21] Threads: 8
[2025-06-05 05:01:21] Checking for CVMFS
[2025-06-05 05:01:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 05:01:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 05:01:22] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 05:01:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 05:01:22] 2.12.6.0 2000804 24487 498572 146812 2 352 24842774 32935937 18359 16776704 0 132934783 99.700 103095154 24599 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-05 05:01:22] CVMFS is ok
[2025-06-05 05:01:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 05:01:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 05:01:22] Further information can be found at the LHC@home message board.
[2025-06-05 05:01:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 05:01:22] Checking for apptainer binary...
[2025-06-05 05:01:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 05:01:22] Running /usr/bin/apptainer --version
[2025-06-05 05:01:22] apptainer version 1.4.1-1.el9
[2025-06-05 05:01:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 05:01:22] c6-12-27-3.aglt2.org
[2025-06-05 05:01:22] apptainer works
[2025-06-05 05:01:22] Set ATHENA_PROC_NUMBER=8
[2025-06-05 05:01:22] Set ATHENA_CORE_NUMBER=8
[2025-06-05 05:01:22] Starting ATLAS job with PandaID=6668688987
[2025-06-05 05:01:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
05:49:52 (1932925): wrapper (7.7.26015): starting
05:49:52 (1932925): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 05:49:52] Arguments: --nthreads 8
[2025-06-05 05:49:52] Threads: 8
[2025-06-05 05:49:52] This job has been restarted, cleaning up previous attempt
[2025-06-05 05:49:52] Checking for CVMFS
[2025-06-05 05:49:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 05:49:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 05:49:52] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 05:49:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 05:49:52] 2.12.6.0 2000804 24535 510384 146814 2 679 25027499 32935936 15863 16776704 0 133137611 99.701 103165293 24603 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-05 05:49:52] CVMFS is ok
[2025-06-05 05:49:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 05:49:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 05:49:52] Further information can be found at the LHC@home message board.
[2025-06-05 05:49:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 05:49:52] Checking for apptainer binary...
[2025-06-05 05:49:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 05:49:52] Running /usr/bin/apptainer --version
[2025-06-05 05:49:52] apptainer version 1.4.1-1.el9
[2025-06-05 05:49:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 05:49:52] c6-12-27-3.aglt2.org
[2025-06-05 05:49:52] apptainer works
[2025-06-05 05:49:52] Set ATHENA_PROC_NUMBER=8
[2025-06-05 05:49:52] Set ATHENA_CORE_NUMBER=8
[2025-06-05 05:49:52] Starting ATLAS job with PandaID=6668688987
[2025-06-05 05:49:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 09:18:40]  *** The last 200 lines of the pilot log: ***
[2025-06-05 09:18:40] 2025-06-05 13:18:25,165 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6668688987/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 09:18:40] 2025-06-05 13:18:25,166 | INFO     | extracted standard info from prmon json
[2025-06-05 09:18:40] 2025-06-05 13:18:25,166 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 09:18:40] 2025-06-05 13:18:25,166 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 09:18:40] 2025-06-05 13:18:25,167 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 09:18:40] 2025-06-05 13:18:25,167 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 09:18:40] 2025-06-05 13:18:25,172 | INFO     | fitting pss+swap vs Time
[2025-06-05 09:18:40] 2025-06-05 13:18:25,173 | INFO     | sum of square deviations: 2671312132.4097424
[2025-06-05 09:18:40] 2025-06-05 13:18:25,174 | INFO     | sum of deviations: 24781520004.06829
[2025-06-05 09:18:40] 2025-06-05 13:18:25,174 | INFO     | mean x: 1749123251.0536585
[2025-06-05 09:18:40] 2025-06-05 13:18:25,174 | INFO     | mean y: 2128137.1756097563
[2025-06-05 09:18:40] 2025-06-05 13:18:25,174 | INFO     | -- intersect: -16224329381.461725
[2025-06-05 09:18:40] 2025-06-05 13:18:25,174 | INFO     | intersect: -16224329381.461725
[2025-06-05 09:18:40] 2025-06-05 13:18:25,175 | INFO     | chi2: 2.3429362768288087
[2025-06-05 09:18:40] 2025-06-05 13:18:25,175 | INFO     | sum of square deviations: 2480552259.59499
[2025-06-05 09:18:40] 2025-06-05 13:18:25,177 | INFO     | sum of deviations: 37286237809.555016
[2025-06-05 09:18:40] 2025-06-05 13:18:25,177 | INFO     | mean x: 1749123098.545
[2025-06-05 09:18:40] 2025-06-05 13:18:25,177 | INFO     | mean y: 2137972.105
[2025-06-05 09:18:40] 2025-06-05 13:18:25,177 | INFO     | -- intersect: -26289676505.20138
[2025-06-05 09:18:40] 2025-06-05 13:18:25,177 | INFO     | intersect: -26289676505.20138
[2025-06-05 09:18:40] 2025-06-05 13:18:25,178 | INFO     | chi2: 1.6708503383717546
[2025-06-05 09:18:40] 2025-06-05 13:18:25,178 | INFO     | current chi2=1.6708503383717546 (change=28.685626028494905 %)
[2025-06-05 09:18:40] 2025-06-05 13:18:25,178 | INFO     | sum of square deviations: 2299119044.5846267
[2025-06-05 09:18:40] 2025-06-05 13:18:25,179 | INFO     | sum of deviations: 36459542212.400024
[2025-06-05 09:18:40] 2025-06-05 13:18:25,180 | INFO     | mean x: 1749122946.0461538
[2025-06-05 09:18:40] 2025-06-05 13:18:25,180 | INFO     | mean y: 2137283.066666667
[2025-06-05 09:18:40] 2025-06-05 13:18:25,180 | INFO     | -- intersect: -27735539909.533302
[2025-06-05 09:18:40] 2025-06-05 13:18:25,180 | INFO     | intersect: -27735539909.533302
[2025-06-05 09:18:40] 2025-06-05 13:18:25,180 | INFO     | chi2: 1.6683569028163034
[2025-06-05 09:18:40] 2025-06-05 13:18:25,180 | INFO     | current chi2=1.6683569028163034 (change=0.14923153188459556 %)
[2025-06-05 09:18:40] 2025-06-05 13:18:25,180 | INFO     | right removable region: 194
[2025-06-05 09:18:40] 2025-06-05 13:18:25,181 | INFO     | sum of square deviations: 2480570317.395006
[2025-06-05 09:18:40] 2025-06-05 13:18:25,182 | INFO     | sum of deviations: -6068438493.065
[2025-06-05 09:18:40] 2025-06-05 13:18:25,182 | INFO     | mean x: 1749123403.555
[2025-06-05 09:18:40] 2025-06-05 13:18:25,182 | INFO     | mean y: 2152598.415
[2025-06-05 09:18:40] 2025-06-05 13:18:25,182 | INFO     | -- intersect: 4281187833.505972
[2025-06-05 09:18:40] 2025-06-05 13:18:25,182 | INFO     | intersect: 4281187833.505972
[2025-06-05 09:18:40] 2025-06-05 13:18:25,183 | INFO     | chi2: 0.796566309568352
[2025-06-05 09:18:40] 2025-06-05 13:18:25,183 | INFO     | current chi2=0.796566309568352 (change=66.00136685550349 %)
[2025-06-05 09:18:40] 2025-06-05 13:18:25,183 | INFO     | sum of square deviations: 2299142957.4871664
[2025-06-05 09:18:40] 2025-06-05 13:18:25,185 | INFO     | sum of deviations: -6291974787.589741
[2025-06-05 09:18:40] 2025-06-05 13:18:25,185 | INFO     | mean x: 1749123556.0512822
[2025-06-05 09:18:40] 2025-06-05 13:18:25,185 | INFO     | mean y: 2152745.358974359
[2025-06-05 09:18:40] 2025-06-05 13:18:25,185 | INFO     | -- intersect: 4788910906.357499
[2025-06-05 09:18:40] 2025-06-05 13:18:25,185 | INFO     | intersect: 4788910906.357499
[2025-06-05 09:18:40] 2025-06-05 13:18:25,185 | INFO     | chi2: 0.781087116791293
[2025-06-05 09:18:40] 2025-06-05 13:18:25,186 | INFO     | current chi2=0.781087116791293 (change=1.9432397015945804 %)
[2025-06-05 09:18:40] 2025-06-05 13:18:25,186 | INFO     | left removable region: 20
[2025-06-05 09:18:40] 2025-06-05 13:18:25,186 | INFO     | sum of square deviations: 1633480359.4482813
[2025-06-05 09:18:40] 2025-06-05 13:18:25,187 | INFO     | sum of deviations: 9721168669.344835
[2025-06-05 09:18:40] 2025-06-05 13:18:25,187 | INFO     | mean x: 1749123525.5172415
[2025-06-05 09:18:40] 2025-06-05 13:18:25,187 | INFO     | mean y: 2159560.385057471
[2025-06-05 09:18:40] 2025-06-05 13:18:25,187 | INFO     | -- intersect: -10407224743.944897
[2025-06-05 09:18:40] 2025-06-05 13:18:25,188 | INFO     | intersect: -10407224743.944897
[2025-06-05 09:18:40] 2025-06-05 13:18:25,188 | INFO     | chi2: 0.07079777900622823
[2025-06-05 09:18:40] 2025-06-05 13:18:25,188 | INFO     | -- intersect: -10407224743.944897
[2025-06-05 09:18:40] 2025-06-05 13:18:25,188 | INFO     | current memory leak: 5.95 B/s (using 174 data points, chi2=0.07)
[2025-06-05 09:18:40] 2025-06-05 13:18:25,189 | INFO     | ..............................
[2025-06-05 09:18:40] 2025-06-05 13:18:25,189 | INFO     | . Timing measurements:
[2025-06-05 09:18:40] 2025-06-05 13:18:25,189 | INFO     | . get job = 0 s
[2025-06-05 09:18:40] 2025-06-05 13:18:25,189 | INFO     | . initial setup = 1 s
[2025-06-05 09:18:40] 2025-06-05 13:18:25,189 | INFO     | . payload setup = 6 s
[2025-06-05 09:18:40] 2025-06-05 13:18:25,189 | INFO     | . stage-in = 0 s
[2025-06-05 09:18:40] 2025-06-05 13:18:25,189 | INFO     | . payload execution = 12468 s
[2025-06-05 09:18:40] 2025-06-05 13:18:25,190 | INFO     | . stage-out = 2 s
[2025-06-05 09:18:40] 2025-06-05 13:18:25,190 | INFO     | . log creation = 0 s
[2025-06-05 09:18:40] 2025-06-05 13:18:25,190 | INFO     | ..............................
[2025-06-05 09:18:40] 2025-06-05 13:18:25,389 | INFO     | 
[2025-06-05 09:18:40] 2025-06-05 13:18:25,389 | INFO     | job summary report
[2025-06-05 09:18:40] 2025-06-05 13:18:25,389 | INFO     | --------------------------------------------------
[2025-06-05 09:18:40] 2025-06-05 13:18:25,389 | INFO     | PanDA job id: 6668688987
[2025-06-05 09:18:40] 2025-06-05 13:18:25,389 | INFO     | task id: 44871837
[2025-06-05 09:18:40] 2025-06-05 13:18:25,389 | INFO     | errors: (none)
[2025-06-05 09:18:40] 2025-06-05 13:18:25,390 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 09:18:40] 2025-06-05 13:18:25,390 | INFO     | pilot state: finished 
[2025-06-05 09:18:40] 2025-06-05 13:18:25,390 | INFO     | transexitcode: 0
[2025-06-05 09:18:40] 2025-06-05 13:18:25,390 | INFO     | exeerrorcode: 0
[2025-06-05 09:18:40] 2025-06-05 13:18:25,390 | INFO     | exeerrordiag: 
[2025-06-05 09:18:40] 2025-06-05 13:18:25,390 | INFO     | exitcode: 0
[2025-06-05 09:18:40] 2025-06-05 13:18:25,390 | INFO     | exitmsg: OK
[2025-06-05 09:18:40] 2025-06-05 13:18:25,390 | INFO     | cpuconsumptiontime: 57024 s
[2025-06-05 09:18:40] 2025-06-05 13:18:25,390 | INFO     | nevents: 400
[2025-06-05 09:18:40] 2025-06-05 13:18:25,390 | INFO     | neventsw: 0
[2025-06-05 09:18:40] 2025-06-05 13:18:25,390 | INFO     | pid: 1965597
[2025-06-05 09:18:40] 2025-06-05 13:18:25,390 | INFO     | pgrp: 1965597
[2025-06-05 09:18:40] 2025-06-05 13:18:25,390 | INFO     | corecount: 8
[2025-06-05 09:18:40] 2025-06-05 13:18:25,391 | INFO     | event service: False
[2025-06-05 09:18:40] 2025-06-05 13:18:25,391 | INFO     | sizes: {0: 2397221, 1: 2397420, 5: 2397626, 11: 2397682, 12479: 2427443, 12482: 2436568, 12488: 2436682}
[2025-06-05 09:18:40] 2025-06-05 13:18:25,391 | INFO     | --------------------------------------------------
[2025-06-05 09:18:40] 2025-06-05 13:18:25,391 | INFO     | 
[2025-06-05 09:18:40] 2025-06-05 13:18:25,391 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-05 09:18:40] 2025-06-05 13:18:25,413 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 09:18:40] 2025-06-05 13:18:25,414 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 09:18:40] 2025-06-05 13:18:25,414 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 09:18:40] 2025-06-05 13:18:25,414 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 09:18:40] 2025-06-05 13:18:25,414 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 09:18:40] 2025-06-05 13:18:25,414 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 09:18:40] 2025-06-05 13:18:25,414 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 09:18:40] 2025-06-05 13:18:25,414 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 09:18:40] 2025-06-05 13:18:25,414 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 09:18:40] 2025-06-05 13:18:25,415 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 09:18:40] 2025-06-05 13:18:25,415 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 09:18:40] 2025-06-05 13:18:25,415 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 09:18:40] 2025-06-05 13:18:25,415 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 09:18:40] 2025-06-05 13:18:25,415 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 09:18:40] 2025-06-05 13:18:25,415 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 09:18:40] 2025-06-05 13:18:25,415 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 09:18:40] 2025-06-05 13:18:25,415 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 09:18:40] 2025-06-05 13:18:25,415 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 09:18:40] 2025-06-05 13:18:25,415 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 09:18:40] 2025-06-05 13:18:25,416 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 09:18:40] 2025-06-05 13:18:25,416 | INFO     | job 6668688987 has completed (purged errors)
[2025-06-05 09:18:40] 2025-06-05 13:18:25,416 | INFO     | overall cleanup function is called
[2025-06-05 09:18:40] 2025-06-05 13:18:26,425 | INFO     | --- collectZombieJob: --- 10, [1965597]
[2025-06-05 09:18:40] 2025-06-05 13:18:26,425 | INFO     | zombie collector waiting for pid 1965597
[2025-06-05 09:18:40] 2025-06-05 13:18:26,425 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 09:18:40] 2025-06-05 13:18:26,425 | INFO     | collected zombie processes
[2025-06-05 09:18:40] 2025-06-05 13:18:26,425 | INFO     | will attempt to kill all subprocesses of pid=1965597
[2025-06-05 09:18:40] 2025-06-05 13:18:26,798 | INFO     | process IDs to be killed: [1965597] (in reverse order)
[2025-06-05 09:18:40] 2025-06-05 13:18:26,918 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 09:18:40] 2025-06-05 13:18:26,918 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 09:18:40] 2025-06-05 13:18:26,933 | INFO     | did not find any defunct processes belonging to 1965597
[2025-06-05 09:18:40] 2025-06-05 13:18:26,948 | INFO     | did not find any defunct processes belonging to 1965597
[2025-06-05 09:18:40] 2025-06-05 13:18:26,949 | INFO     | ready for new job
[2025-06-05 09:18:40] 2025-06-05 13:18:26,949 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 09:18:40] 2025-06-05 13:18:26,951 | INFO     | **************************************
[2025-06-05 09:18:40] 2025-06-05 13:18:26,951 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 09:18:40] 2025-06-05 13:18:26,951 | INFO     | **************************************
[2025-06-05 09:18:40] 2025-06-05 13:18:26,951 | INFO     | 
[2025-06-05 09:18:40] 2025-06-05 13:18:26,971 | INFO     | architecture information:
[2025-06-05 09:18:40] 2025-06-05 13:18:26,972 | INFO     | executing command: cat /etc/os-release
[2025-06-05 09:18:40] 2025-06-05 13:18:26,990 | INFO     | cat /etc/os-release:
[2025-06-05 09:18:40] NAME="CentOS Linux"
[2025-06-05 09:18:40] VERSION="7 (Core)"
[2025-06-05 09:18:40] ID="centos"
[2025-06-05 09:18:40] ID_LIKE="rhel fedora"
[2025-06-05 09:18:40] VERSION_ID="7"
[2025-06-05 09:18:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 09:18:40] ANSI_COLOR="0;31"
[2025-06-05 09:18:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 09:18:40] HOME_URL="https://www.centos.org/"
[2025-06-05 09:18:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 09:18:40] 
[2025-06-05 09:18:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 09:18:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 09:18:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 09:18:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 09:18:40] 
[2025-06-05 09:18:40] 2025-06-05 13:18:26,991 | INFO     | **************************************
[2025-06-05 09:18:40] 2025-06-05 13:18:27,494 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-05 09:18:40] 2025-06-05 13:18:27,513 | INFO     | sufficient remaining disk space (95278858240 B)
[2025-06-05 09:18:40] 2025-06-05 13:18:27,514 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 09:18:40] 2025-06-05 13:18:27,514 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 09:18:40] 2025-06-05 13:18:27,514 | INFO     | update_server=False
[2025-06-05 09:18:40] 2025-06-05 13:18:27,514 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 09:18:40] 2025-06-05 13:18:27,514 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 09:18:40] 2025-06-05 13:18:27,515 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 09:18:40] 2025-06-05 13:18:27,515 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 09:18:40] 2025-06-05 13:18:27,515 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 09:18:40] 2025-06-05 13:18:27,515 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 09:18:40] 2025-06-05 13:18:27,515 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 09:18:40] 2025-06-05 13:18:27,515 | INFO     | aborting loop
[2025-06-05 09:18:40] 2025-06-05 13:18:27,759 | INFO     | all data control threads have been joined
[2025-06-05 09:18:40] 2025-06-05 13:18:27,989 | INFO     | all job control threads have been joined
[2025-06-05 09:18:40] 2025-06-05 13:18:28,519 | INFO     | [job] retrieve thread has finished
[2025-06-05 09:18:40] 2025-06-05 13:18:28,520 | INFO     | [job] job monitor thread has finished
[2025-06-05 09:18:40] 2025-06-05 13:18:28,759 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 09:18:40] 2025-06-05 13:18:28,764 | INFO     | [data] control thread has finished
[2025-06-05 09:18:40] 2025-06-05 13:18:28,871 | INFO     | [job] validate thread has finished
[2025-06-05 09:18:40] 2025-06-05 13:18:28,967 | INFO     | all payload control threads have been joined
[2025-06-05 09:18:40] 2025-06-05 13:18:28,995 | INFO     | [job] control thread has finished
[2025-06-05 09:18:40] 2025-06-05 13:18:29,016 | INFO     | [data] copytool_in thread has finished
[2025-06-05 09:18:40] 2025-06-05 13:18:29,315 | INFO     | [payload] failed_post thread has finished
[2025-06-05 09:18:40] 2025-06-05 13:18:29,518 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 09:18:40] 2025-06-05 13:18:29,521 | INFO     | [data] copytool_out thread has finished
[2025-06-05 09:18:40] 2025-06-05 13:18:29,560 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 09:18:40] 2025-06-05 13:18:29,786 | INFO     | [payload] validate_post thread has finished
[2025-06-05 09:18:40] 2025-06-05 13:18:29,800 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 09:18:40] 2025-06-05 13:18:29,899 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 09:18:40] 2025-06-05 13:18:29,972 | INFO     | [payload] control thread has finished
[2025-06-05 09:18:40] 2025-06-05 13:18:30,317 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 09:18:40] 2025-06-05 13:18:31,322 | INFO     | [job] queue monitor thread has finished
[2025-06-05 09:18:40] 2025-06-05 13:18:33,806 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 09:18:40] 2025-06-05 13:18:34,700 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140613460064064)>', '<ExcThread(monitor, started 140612959446784)>']
[2025-06-05 09:18:40] 2025-06-05 13:18:35,557 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 09:18:40] 2025-06-05 13:18:35,557 | INFO     | [monitor] control thread has ended
[2025-06-05 09:18:40] 2025-06-05 13:18:39,726 | INFO     | all workflow threads have been joined
[2025-06-05 09:18:40] 2025-06-05 13:18:39,726 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 09:18:40] 2025-06-05 13:18:39,726 | INFO     | traces error code: 0
[2025-06-05 09:18:40] 2025-06-05 13:18:39,727 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 09:18:40] 2025-06-05 13:18:40,019 [wrapper] ==== pilot stdout END ====
[2025-06-05 09:18:40] 2025-06-05 13:18:40,023 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 09:18:40] 2025-06-05 13:18:40,026 [wrapper] pilotpid: 1944840
[2025-06-05 09:18:40] 2025-06-05 13:18:40,029 [wrapper] Pilot exit status: 0
[2025-06-05 09:18:40] 2025-06-05 13:18:40,044 [wrapper] pandaids: 6668688987 6668688987
[2025-06-05 09:18:40] 2025-06-05 13:18:40,131 [wrapper] cleanup supervisor_pilot 2515055 1944842
[2025-06-05 09:18:40] 2025-06-05 13:18:40,139 [wrapper] Test setup, not cleaning
[2025-06-05 09:18:40] 2025-06-05 13:18:40,149 [wrapper] apfmon messages muted
[2025-06-05 09:18:40] 2025-06-05 13:18:40,189 [wrapper] ==== wrapper stdout END ====
[2025-06-05 09:18:40] 2025-06-05 13:18:40,221 [wrapper] ==== wrapper stderr END ====
[2025-06-05 09:18:40]  *** Error codes and diagnostics ***
[2025-06-05 09:18:40]     "exeErrorCode": 0,
[2025-06-05 09:18:40]     "exeErrorDiag": "",
[2025-06-05 09:18:40]     "pilotErrorCode": 0,
[2025-06-05 09:18:40]     "pilotErrorDiag": "",
[2025-06-05 09:18:40]  *** Listing of results directory ***
[2025-06-05 09:18:40] total 641892
[2025-06-05 09:18:40] drwx------. 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-06-05 09:18:40] -rw-r--r--. 1 boincer umatlas    495897 May 28 12:21 pilot3.tar.gz
[2025-06-05 09:18:40] -rw-r--r--. 1 boincer umatlas      5111 May 28 12:41 queuedata.json
[2025-06-05 09:18:40] -rwx------. 1 boincer umatlas     37140 May 28 12:42 runpilot2-wrapper.sh
[2025-06-05 09:18:40] -rw-r--r--. 1 boincer umatlas       100 Jun  5 05:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 09:18:40] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  5 05:01 run_atlas
[2025-06-05 09:18:40] -rw-r--r--. 1 boincer umatlas       105 Jun  5 05:01 job.xml
[2025-06-05 09:18:40] -rw-r--r--. 3 boincer umatlas 227361760 Jun  5 05:01 EVNT.44871834._003400.pool.root.1
[2025-06-05 09:18:40] -rw-r--r--. 3 boincer umatlas 227361760 Jun  5 05:01 ATLAS.root_0
[2025-06-05 09:18:40] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 05:01 start_atlas.sh
[2025-06-05 09:18:40] drwxrwx--x. 2 boincer umatlas      4096 Jun  5 05:01 shared
[2025-06-05 09:18:40] -rw-r--r--. 2 boincer umatlas    508877 Jun  5 05:01 input.tar.gz
[2025-06-05 09:18:40] -rw-r--r--. 1 boincer umatlas         0 Jun  5 05:01 boinc_lockfile
[2025-06-05 09:18:40] -rw-r--r--. 1 boincer umatlas      2559 Jun  5 05:49 pandaJob.out
[2025-06-05 09:18:40] -rw-------. 1 boincer umatlas    983289 Jun  5 05:50 agis_schedconf.cvmfs.json
[2025-06-05 09:18:40] -rw-r--r--. 1 boincer umatlas      6860 Jun  5 09:10 init_data.xml
[2025-06-05 09:18:40] -rw-------. 1 boincer umatlas 195867462 Jun  5 09:17 HITS.44871837._087286.pool.root.1
[2025-06-05 09:18:40] -rw-r--r--. 1 boincer umatlas       530 Jun  5 09:17 boinc_task_state.xml
[2025-06-05 09:18:40] -rw-------. 1 boincer umatlas        96 Jun  5 09:17 pilot_heartbeat.json
[2025-06-05 09:18:40] -rw-------. 1 boincer umatlas      1052 Jun  5 09:18 memory_monitor_summary.json
[2025-06-05 09:18:40] -rw-------. 1 boincer umatlas   1598969 Jun  5 09:18 agis_ddmendpoints.agis.ALL.json
[2025-06-05 09:18:40] -rw-------. 1 boincer umatlas    375018 Jun  5 09:18 log.44871837._087286.job.log.tgz.1
[2025-06-05 09:18:40] -rw-r--r--. 1 boincer umatlas      8192 Jun  5 09:18 boinc_mmap_file
[2025-06-05 09:18:40] -rw-r--r--. 1 boincer umatlas        28 Jun  5 09:18 wrapper_checkpoint.txt
[2025-06-05 09:18:40] -rw-------. 1 boincer umatlas      7743 Jun  5 09:18 heartbeat.json
[2025-06-05 09:18:40] -rw-------. 1 boincer umatlas      4476 Jun  5 09:18 pilotlog.txt
[2025-06-05 09:18:40] -rw-------. 1 boincer umatlas   1061607 Jun  5 09:18 log.44871837._087286.job.log.1
[2025-06-05 09:18:40] -rw-------. 1 boincer umatlas       357 Jun  5 09:18 output.list
[2025-06-05 09:18:40] -rw-r--r--. 1 boincer umatlas       620 Jun  5 09:18 runtime_log
[2025-06-05 09:18:40] -rw-------. 1 boincer umatlas   1454080 Jun  5 09:18 result.tar.gz
[2025-06-05 09:18:40] -rw-r--r--. 1 boincer umatlas      8755 Jun  5 09:18 runtime_log.err
[2025-06-05 09:18:40] -rw-------. 1 boincer umatlas       785 Jun  5 09:18 hFCMDmc2Ye7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmbdcKDmoT09Oo.diag
[2025-06-05 09:18:40] -rw-r--r--. 1 boincer umatlas     23090 Jun  5 09:18 stderr.txt
[2025-06-05 09:18:40] HITS file was successfully produced:
[2025-06-05 09:18:40] -rw-------. 1 boincer umatlas 195867462 Jun  5 09:17 shared/HITS.pool.root.1
[2025-06-05 09:18:40]  *** Contents of shared directory: ***
[2025-06-05 09:18:40] total 415256
[2025-06-05 09:18:40] -rw-r--r--. 3 boincer umatlas 227361760 Jun  5 05:01 ATLAS.root_0
[2025-06-05 09:18:40] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 05:01 start_atlas.sh
[2025-06-05 09:18:40] -rw-r--r--. 2 boincer umatlas    508877 Jun  5 05:01 input.tar.gz
[2025-06-05 09:18:40] -rw-------. 1 boincer umatlas 195867462 Jun  5 09:17 HITS.pool.root.1
[2025-06-05 09:18:40] -rw-------. 1 boincer umatlas   1454080 Jun  5 09:18 result.tar.gz
09:18:41 (1932925): run_atlas exited; CPU time 57499.330302
09:18:41 (1932925): called boinc_finish(0)

</stderr_txt>
]]>

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